E. Lancellotti and A. Franceschini, Studies on the ectomycorrhizal community in a declining Quercus suber L. stand, Mycorrhiza, vol.23, pp.533-542, 2013.

E. Lancellotti, M. Iotti, A. Zambonelli, and A. Franceschini, True truffle (Tuber spp.) in the world, pp.105-124, 2016.

A. Fontana and M. Palenzona, Sintesi micorrizica di tuber albidum in coltura pura, con Pinus strobus e pioppo euroamericano, Allionia, vol.15, pp.100-104, 1969.

A. Zambonelli, M. Iotti, and I. Hall, Current status of truffle cultivation: recent results and future perspectives, Ital J Mycol, vol.44, pp.31-40, 2015.

F. Martin, A. Kohler, C. Murat, R. Balestrini, P. M. Coutinho et al., Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis, Nature, vol.464, pp.1033-1038, 2010.

B. Belfiori, C. Riccioni, F. Paolocci, and A. Rubini, Characterization of the reproductive mode and life cycle of the whitish truffle, T. borchii. Mycorrhiza, vol.26, pp.515-527, 2016.

M. Iotti, E. Barbieri, V. Stocchi, and A. Zambonelli, Morphological and molecular characterisation of mycelia of ectomycorrhizal fungi in pure culture, Fungal Divers, vol.19, pp.51-68, 2005.

A. Kohler, A. Kuo, L. G. Nagy, E. Morin, K. W. Barry et al., Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists, Nat Genet, vol.47, pp.410-415, 2015.
URL : https://hal.archives-ouvertes.fr/hal-01140842

C. Chin, P. Peluso, F. J. Sedlazeck, M. Nattestad, G. T. Concepcion et al., Phased diploid genome assembly with single-molecule real-time sequencing, Nat Methods, vol.13, pp.1050-1054, 2016.

K. Lam, K. Labutti, A. Khalak, and D. Tse, FinisherSC: a repeat-aware tool for upgrading de novo assembly using long reads, Bioinformatics, vol.31, pp.3207-3209, 2015.

C. Chin, D. H. Alexander, P. Marks, A. A. Klammer, J. Drake et al., Nonhybrid, finished microbial genome assemblies from longread SMRT sequencing data, Nat Methods, vol.10, pp.563-569, 2013.
DOI : 10.1038/nmeth.2474

J. Martin, V. M. Bruno, Z. Fang, X. Meng, M. Blow et al., Rnnotator: an automated de novo transcriptome assembly pipeline from stranded RNA-seq reads, BMC Genomics, vol.11, p.663, 2010.
DOI : 10.1186/1471-2164-11-663

URL : https://bmcgenomics.biomedcentral.com/track/pdf/10.1186/1471-2164-11-663

I. V. Grigoriev, R. Nikitin, S. Haridas, A. Kuo, R. Ohm et al., MycoCosm portal: gearing up for 1000 fungal genomes, Nucleic Acids Res, vol.42, pp.699-704, 2014.
DOI : 10.1093/nar/gkt1183

URL : https://academic.oup.com/nar/article-pdf/42/D1/D699/3619942/gkt1183.pdf

A. Kuo, B. Bushnell, and I. V. Grigoriev, Fungal genomics: sequencing and annotation, Fungi. Advances in botanical research, pp.1-52, 2014.

C. Murat and F. Martin, Truffle genomics: investigating an early diverging lineage of Pezizomycotina, pp.137-149, 2016.
URL : https://hal.archives-ouvertes.fr/hal-01950278

S. Traeger, F. Altegoer, M. Freitag, T. Gabaldon, F. Kempken et al., The genome and development-dependent transcriptomes of Pyronema confluens: a window into fungal evolution, PLoS Genet, vol.9, 2013.

R. Debuchy, V. Berteaux-lecellier, and P. Silar, Mating systems and sexual morphogenesis in ascomycetes, Cellular and molecular biology of filamentous fungi, pp.501-535, 2010.
URL : https://hal.archives-ouvertes.fr/hal-00480603