The DNA methylation landscape of human early embryos, Nature, vol.511, p.25079557, 2014. ,
Identification of genetic elements that autonomously determine DNA methylation states, Nat Genet, vol.43, p.21964573, 2011. ,
The transcriptome and DNA methylome landscapes of human primordial germ cells, Cell, vol.161, p.26046443, 2015. ,
DNA methylation: roles in mammalian development, Nat Rev Genet, vol.14, p.23400093, 2013. ,
Severe Global DNA Hypomethylation Blocks Differentiation and Induces Histone Hyperacetylation in Embryonic Stem Cells, Mol Cell Biol, vol.24, p.15456861, 2004. ,
G9a-mediated irreversible epigenetic inactivation of Oct-3/4 during early embryogenesis, Nat Cell Biol, vol.8, p.16415856, 2006. ,
DNA methylation is a primary mechanism for silencing postmigratory primordial germ cell genes in both germ cell and somatic cell lineages, Development, vol.133, p.16887828, 2006. ,
Cooperativity between DNA methyltransferases in the maintenance methylation of repetitive elements, Mol Cell Biol, vol.22, p.11756544, 2002. ,
Dnmt3L and the Establishment of Maternal Genomic Imprints, Science (80-), vol.294, p.11719692, 2001. ,
De novo DNA methylation through 5'-segment of the H19 ICR maintains its imprint during early embryogenesis, Development, vol.142, p.26417043, 2015. ,
Noncoding RNAs and Epigenetic Mechanisms During X-Chromosome Inactivation, Annu DevBiol, vol.11, pp.561-80, 2014. ,
DOI : 10.1146/annurev-cellbio-101512-122415
Notes on the role of dynamic DNA methylation in mammalian development, Proc Natl Acad Sci U S A, vol.112, p.25368180, 2014. ,
Evidence that DNA methylation engenders dynamic gene regulation, Proc Natl Acad Sci, vol.112, p.25848065, 2015. ,
DOI : 10.1073/pnas.1502195112
URL : http://www.pnas.org/content/112/17/E2116.full.pdf
The putative oncogene GASC1 demethylates tri-and dimethylated lysine 9 on histone H3, Nature, vol.442, p.16732293, 2006. ,
Long noncoding RNAs in organogenesis: Making the difference, Trends Genet, vol.31, p.25743487, 2015. ,
Cell fate control by pioneer transcription factors, Development, vol.143, p.27246709, 2016. ,
DNA methyltransferases Dnmt3a and Dnmt3b are essential for de novo methylation and mammalian development, Cell, vol.99, p.10555141, 1999. ,
A unique gene regulatory network resets the human germline epigenome for development, Cell, vol.161, p.26046444, 2015. ,
Identical sets of methylated and nonmethylated genes in Ciona intestinalis sperm and muscle cells, Epigenetics Chromatin, vol.6, p.24279449, 2013. ,
The evolution of invertebrate gene body methylation, Mol Biol Evol, vol.29, p.22328716, 2012. ,
Genome-wide association between DNA methylation and alternative splicing in an invertebrate, BMC Genomics, vol.13, p.22978521, 2012. ,
DNA methylation is widespread and associated with differential gene expression in castes of the honeybee, Apis mellifera, Proc Natl Acad Sci U S A, vol.106, p.19556545, 2009. ,
The honey bee epigenomes: differential methylation of brain DNA in queens and workers, PLoS Biol, vol.8, p.21072239, 2010. ,
Genome-wide and caste-specific DNA methylomes of the ants Camponotus floridanus and Harpegnathos saltator, Curr Biol, vol.22, p.22885060, 2012. ,
Epigenetic variation in the Egfr gene generates quantitative variation in a complex trait in ants, Nat Commun, vol.6, pp.1-9, 2015. ,
DNA methylation plays a crucial role during early Nasonia development, Insect Mol Biol, vol.21, p.22122805, 2012. ,
DOI : 10.1111/j.1365-2583.2011.01121.x
URL : https://pure.rug.nl/ws/files/6773125/2012InsectMolBiolZwier.pdf
Function and Evolution of DNA Methylation in Nasonia vitripennis, PLoS Genet, vol.9, p.24130511, 2013. ,
The regulation of Hox gene expression during animal development, Development, vol.140, p.24046316, 2013. ,
Evolutionary Transition of Promoter and Gene Body DNA Methylation across Invertebrate-Vertebrate Boundary, Mol Biol Evol, vol.33, pp.1019-1047, 2016. ,
Genome-wide evolutionary analysis of eukaryotic DNA methylation, Science, vol.328, p.20395474, 2010. ,
5-methylcytosine and 5-hydroxy-methyl-cytosine in the genome of Biomphalaria glabrata, a snail intermediate host of Schistosoma mansoni, Parasites and Vectors, vol.6, p.23742053, 2013. ,
URL : https://hal.archives-ouvertes.fr/halsde-00839033
Predominant intragenic methylation is associated with gene expression characteristics in a bivalve mollusc, PeerJ, vol.1, p.24282674, 2013. ,
Genome-wide and single-base resolution DNA methylomes of the Pacific oyster Crassostrea gigas provide insight into the evolution of invertebrate CpG methylation, BMC Genomics, vol.15, p.25514978, 1119. ,
Genome-wide profiling of DNA methylation and gene expression in Crassostrea gigas male gametes, Front Physiol, vol.5, 2014. ,
DNA Methylation Is Crucial for the Early Development in the Oyster C. gigas, Mar Biotechnol (NY), vol.15, pp.739-753, 2013. ,
Regulation of Hox orthologues in the oyster Crassostrea gigas evidences a functional role for promoter DNA methylation in an invertebrate, FEBS Lett, vol.589, p.25943713, 2015. ,
Epigenetic features in the oyster Crassostrea gigas suggestive of functionally relevant promoter DNA methylation in invertebrates, Front Physiol, vol.5, p.24778620, 2014. ,
A context dependent role for DNA methylation in bivalves, Brief Funct Genomics, vol.13, p.24397979, 2014. ,
Transcription in leech: mRNA synthesis is required for early cleavages in Helobdella embryos, Dev Biol, vol.146, p.2060698, 1991. ,
Large hypomethylated domains serve as strong repressive machinery for key developmental genes in vertebrates, Development, vol.141, p.24924192, 2014. ,
Maternal DNA Methylation Regulates Early Trophoblast Development, Dev Cell, vol.36, p.26812015, 2016. ,
DOI : 10.1016/j.devcel.2015.12.027
URL : https://doi.org/10.1016/j.devcel.2015.12.027
The oyster genome reveals stress adaptation and complexity of shell formation, Nature, vol.490, p.22992520, 2012. ,
Zygotic Genome Activators, Developmental Timing, and Pluripotency, Curr Top Dev Biol, 2016. ,
DOI : 10.1016/bs.ctdb.2015.12.004
Genome-wide identification and characterization of long intergenic noncoding RNAs and their potential association with larval development in the Pacific oyster, Sci Rep, vol.6, p.26861843, 2016. ,
Cytosine methylation and the ecology of intragenomic parasites, Trends Genet, vol.13, p.9260521, 1997. ,
Chromatin signatures and retrotransposon profiling in mouse embryos reveal regulation of LINE-1 by RNA, Nat Struct Mol Biol, vol.20, p.23353788, 2013. ,
Functions of DNA methylation: islands, start sites, gene bodies and beyond, Nat Rev Genet, vol.13, pp.484-92, 2012. ,
Function and information content of DNA methylation, Nature, vol.517, p.25592537, 2015. ,
DNA methylation patterns provide insight into epigenetic regulation in the Pacific oyster (Crassostrea gigas), BMC Genomics, vol.11, p.20799955, 2010. ,
Temperature influence on pathogen transmission and subsequent mortalities in juvenile Pacific oysters Crassostrea gigas, Aquacult Environ Toxicol, vol.3, pp.257-273, 2013. ,
URL : https://hal.archives-ouvertes.fr/hal-00946757
Gametogenic stages in triploid oysters Crassostrea gigas: Irregular locking of gonial proliferation and subsequent reproductive effort, J Exp Mar Bio Ecol, vol.395, pp.162-170, 2010. ,
Methylome analysis using MeDIP-seq with low DNA concentrations, Nat Protoc, vol.7, p.22402632, 2012. ,
DOI : 10.1038/nprot.2012.012
Countbased differential expression analysis of RNA sequencing data using R and Bioconductor, Nat Protoc, vol.8, p.23975260, 2013. ,
diffReps: Detecting Differential Chromatin Modification Sites from ChIP-seq Data with Biological Replicates, PLoS One, vol.8, p.23762400, 2013. ,
DOI : 10.1371/journal.pone.0065598
URL : https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0065598&type=printable
topGO: Enrichment analysis for Gene Ontology, 2010. ,
GigaTON: an extensive publicly searchable database providing a new reference transcriptome in the pacific oyster Crassostrea gigas, BMC Bioinformatics, vol.16, p.26627443, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-01258440