I. M. Abascal-monroy, M. J. Zetina-rejon, F. Escobar-toledo, G. A. Lopez-ibarra, A. Sosa-lopez et al., Functional and structural food web comparison of Terminos Lagoon, Mexico in three periods, vol.39, pp.1282-1293, 1980.
DOI : 10.1007/s12237-015-0054-0

H. Abdi and L. J. Williams, Principal component analysis, WIREs Comp Stat, vol.2, pp.433-459, 2010.
URL : https://hal.archives-ouvertes.fr/hal-01259094

K. G. Abrantes, A. Barnett, and S. Bouillon, Stable isotope-based community metrics as a tool to identify patterns in food web structure in east African estuaries, Funct Ecol, vol.28, pp.270-282, 2014.

A. Afifi, S. May, V. Clark, /. Hall, . Crc et al., The economics of climate change in Central America, Summary 2010. UN-CEPAL report, pp.25-26, 2010.

M. O. Baringer, D. S. Arndt, M. Johnson, A. H. Sobel, S. J. Camargo et al., Projected changes in the physical climate of the Gulf coast and Caribbean, Understanding ENSO Diversity. Bull Am Meteorol Soc, vol.91, issue.7, pp.921-938, 2009.

S. Carpenter, B. Walker, J. M. Anderies, and N. Abel, From metaphor to measurement: resilience of what to what, Ecosystems, vol.4, pp.765-781, 2001.
DOI : 10.1007/s10021-001-0045-9

G. Colorado-ruiz, T. Cavazos, J. A. Salinas, D. Grau, P. Ayala et al., Climate change projections from Coupled Model Intercomparison Project phase 5 multi-model weighted ensembles for Mexico, the North American monsoon, and the mid-summer drought region, Int J Climatol, vol.38, pp.5699-5716, 2018.

P. Conan, M. Agab, C. Benítez, L. G. Chifflet, S. Douillet et al., Combining biogeochemical characterisation and microbial biomass and activities to assess pelagic cycling in a large and shallow tropical lagoon, Biogeosciences, vol.14, pp.959-975, 2017.

A. Contreras-ruiz-esparza, P. Douillet, and J. Zavala-hidalgo, Tidal dynamics of the Terminos lagoon, Mexico: observations and 3D numerical modelling, Ocean Dyn, vol.64, pp.1349-1371, 2014.

L. T. David, Mexican and central American coastal lagoon systems: carbon, nitrogen and phosphorus fluxes, LOICZ reports and studies N°13, LOICZ international project office, pp.9-15, 1999.

L. T. David and B. Kjerfve, Tides and Currents in a Two-Inlet Coastal Lagoon: Laguna de Términos, México. Cont Shelf Res, vol.18, pp.33-41, 1998.
DOI : 10.1016/s0278-4343(98)00033-8

M. Elliott and D. S. Mclusky, The need for definitions in understanding estuaries, Estuar Coast Shelf Sci, vol.55, pp.815-827, 2002.
DOI : 10.1006/ecss.2002.1031

J. C. Espinal, P. Salles, and D. K. Morán, Coastal sediments '07: proceedings of the sixth international symposium on coastal engineering and Spatiotemporal variability in Terminos Lagoon (Mexico) waters during the 2009-2010 drought reveals upcoming... science of coastal sediment process, pp.996-1007, 2007.

K. A. Fanning and M. E. Pilson, On the spectrophotometric determination of dissolved silica in natural waters, Anal Chem, vol.45, pp.136-140, 1973.

R. Fichez, T. D. Jickells, and H. M. Edmunds, Algal blooms in high turbidity, a result of the conflicting consequences of turbulence on nutrient cycling in a shallow water estuary, Estuar Coast Shelf Sci, vol.35, pp.577-592, 1992.

R. Fichez, D. Archundia, C. Grenz, P. Douillet, G. Mendieta et al., Global climate change and local watershed management as potential drivers of salinity variation in a tropical coastal lagoon (Laguna de Terminos, Mexico), Aquat Sci, vol.79, pp.219-230, 2017.
URL : https://hal.archives-ouvertes.fr/hal-01780226

R. Fichez, S. Chifflet, P. Douillet, P. Gérard, F. Gutierrez et al., Biogeochemical typology and temporal variability of lagoon waters in a coral reef ecosystem subject to terrigeneous and anthropogenic inputs, Mar Pollut Bull, vol.61, pp.309-322, 2010.
URL : https://hal.archives-ouvertes.fr/hal-00765976

M. Furnas, Catchments and corals: terrestrial runoff to the great barrier reef. Australian Institute of Marine Science and CRC Reef Research Centre, p.334, 2003.

V. García-ríos, L. Alpuche-gual, J. Herrera-silveira, J. Montero-muñoz, S. Morales-ojeda et al., Towards a coastal condition assessment and monitoring of the Gulf of Mexico Large Marine Ecosystem (GoM LME): Terminos Lagoon pilot site, Environm Dev, vol.7, pp.72-79, 2013.

F. Giorgi, Climate change hot-spots, Geophys Res Lett, vol.33, p.8707, 2006.
DOI : 10.1029/2006gl025734

C. Grenz, R. Fichez, A. Silva, C. , C. Benitez et al., Benthic ecology of tropical coastal lagoons: environmental changes over the last decades in the Terminos Lagoon, Mexico. Compt Rendus Geosci, vol.349, pp.319-329, 2017.
URL : https://hal.archives-ouvertes.fr/hal-01667428

D. Haynes, J. Brodie, C. Christie, M. Devlin, K. Michalek-wagner et al., Great Barrier Reef water quality: current issues, 2001.

H. G. Hidalgo, J. A. Amador, E. J. Alfaro, and B. Quesada, Hydrological climate change projections for Central America, J Hydrol, vol.495, pp.94-112, 2013.
DOI : 10.1016/j.jhydrol.2013.05.004

R. M. Holmes, A. Aminot, R. Kérouel, A. Bethanie, A. Hooher et al., A simple and precise method for measuring ammonium in marine and freshwater ecosystems, Can J Aquat Sci, vol.56, pp.1801-1808, 1999.
DOI : 10.1139/cjfas-56-10-1801

C. S. Hopkinson, S. J. Kipp, and J. C. Stevenson, Nitrogen pools and turnover times in a tropical seagrass system, Terminos Lagoon. In Ecology of Coastal ecosystem in the southern Gulf of Mexico: The Terminos lagoon Region, Coast. Ecol. Inst, vol.9, pp.171-180, 1988.

P. F. Hudson, D. A. Hendrickson, A. C. Benke, A. Varela-romero, R. Rodileshernández et al., , pp.1030-1084, 2005.

W. J. Junk and K. M. Wantzen, The flood pulse concept: new aspects, approaches and applications-an update, Proceedings of the Second International Symposium on the Management of Large Rivers for Fisheries, II edn. FAO Regional Office for Asia and the Pacific, pp.117-140, 2004.

G. P. Kemp, J. W. Day, A. Yáñez-arancibia, and N. S. Peyronnin, Can continental Shelf River plumes in the northern and southern Gulf of Mexico promote ecological resilience in a time of climate change? Water, vol.8, p.83, 2016.

R. Kérouel and A. Aminot, Fluorometric determination of ammonia in sea and estuarine waters by direct segmented flow analysis, Mar Chem, vol.57, issue.97, pp.40-46, 1997.

S. T. Larned, Nitrogen-versus phosphorus-limited growth and sources of nutrients for coral reef macroalgae, Mar Biol, vol.132, pp.409-421, 1998.

P. Liston, M. J. Furnas, A. W. Mitchell, and E. A. Drew, Local and mesoscale variability of surface water temperature and chlorophyll in the northern Great Barrier Reef, Aust Cont Shelf Res, vol.12, p.90051, 1992.

C. J. Lorenzen, A method for the continuous measurement of in vivo chlorophyll concentration, Deep-Sea Res, vol.13, pp.223-227, 1966.

P. Lucena-moya, C. Gómez-rodríguez, and I. Pardo, Spatio-temporal variability in water chemistry of Mediterranean coastal lagoons and its management implications, Wetlands, vol.32, pp.1033-1045, 2012.

G. Magrin, G. García, C. , C. Choque, D. Giménez et al., Latin America. Climate change 2007: impacts, adaptation and vulnerability. Contribution of working group II to the fourth assessment report of the intergovernmental panel on climate change, pp.581-615, 2007.

D. S. Mclusky and M. Elliott, Transitional waters: a new approach, semantics or just muddying the waters?, Estuar Coast Shelf Sci, vol.71, pp.359-363, 2007.

I. Medina-gomez, G. J. Villalobos-zapata, and J. A. Herrera-silveira, Spatial and temporal hydrological variations in the inner estuaries of a large coastal lagoon of the southern Gulf of Mexico, 2015.

, Climate: observations, projections and impacts, Met Office, 2011.

P. Murphy and J. P. Riley, A modified single solution method for the determination of phosphate in natural waters, Anal Chim Acta, vol.27, pp.31-36, 1962.

I. Muslim and G. Jones, The seasonal variation of dissolved nutrients, chlorophyll a and suspended sediments at Nelly Bay, Magnetic Island, Estuar Coast Shelf Sci, vol.57, pp.373-379, 2003.

S. Ouillon, P. Douillet, and S. Andrefouet, Coupling satellite data with in situ measurements and numerical modeling to study fine suspendedsediment transport: a study for the lagoon of New Caledonia, Coral Reefs, vol.23, pp.109-122, 2004.

S. Poikane, N. Zampoukas, A. Borja, S. P. Davies, W. Van-de-bund et al., Intercalibration of aquatic ecological assessment methods in the European Union: lessons learned and way forward, Environ Sci Pol, vol.44, pp.237-246, 2014.

S. Rahmstorf, Sea-level rise: towards understanding local vulnerability, Environ Res Lett, vol.7, pp.1-3, 2012.
DOI : 10.1088/1748-9326/7/2/021001

URL : http://iopscience.iop.org/article/10.1088/1748-9326/7/2/021001/pdf

P. Raimbault, G. Slawyk, B. Coste, and J. Fry, Feasibility of measuring an automated colorimetric procedure for the determination of seawater nitrate in the 0 to 100 nM range: examples from field and culture, Mar Biol, vol.104, pp.347-351, 1990.

R. Miranda, J. Mouillot, D. , F. Hernandez, and D. , Changes in four complementary facets of fish diversity in a tropical coastal lagoon after 18 years: a functional interpretation, Mar Ecol Prog Ser, vol.304, pp.1-13, 2005.

D. Robadue, A. Oczkowski, R. Calderon, L. Bach, and M. F. Cepeda, Characterization of the region of the Terminos Lagoon: Campeche, Mexico. PlusDraft 1 Site Profile. Draft for discussion. The Nature Conservancy, 2004.

C. Sáenz-romero, G. E. Rehfeldt, N. L. Crookston, P. Duval, R. St-amand et al., Spline models of contemporary, 2030, 2060 and 2090 climates for Mexico and their use in understanding climate-change impacts on the vegetation, Clim Chang, vol.102, pp.595-623, 2010.

S. P. Seitzinger, E. Mayorga, A. F. Bouwman, C. Kroeze, A. Beusen et al., Global river nutrient export: a scenario analysis of past and future trends, Glob Biogeochem Cycles, vol.24, 2010.
DOI : 10.1029/2009gb003587

A. Sepúlveda-lozada, U. Saint-paul, M. Mendoza-carranza, M. Wolff, and A. Yáñez-arancibia, Flood pulse induced changes in isotopic niche and resource utilization of consumers in a Mexican floodplain system, Aquat Sci, vol.79, issue.3, pp.597-616, 2017.

J. Y. Shin, F. Artigas, C. Hobble, and Y. Lee, Assessment of anthropogenic influences on surface water quality in urban estuary, northern New Jersey: multivariate approach, Environ Monit Assess, vol.185, pp.2777-2794, 2013.

C. Sirot, S. Villéger, D. Mouillot, A. M. Darnaude, J. Ramos-miranda et al., Combinations of biological attributes predict temporal dynamics of fish species in response to environmental changes, Ecol Indic, vol.48, pp.147-156, 2015.
URL : https://hal.archives-ouvertes.fr/hal-01840060

A. Sosa-lópez, D. Mouillot, D. Chi, T. , R. Miranda et al., Ecological indicators based on fish biomass distribution along trophic levels: an application to the Terminos coastal lagoon, Mexico, ICES J Mar Sci, vol.62, pp.453-458, 2005.

R. E. Turner, N. N. Rabalais, &. Justic, and Q. Dortch, Global patterns of dissolved N, P and Si in large rivers, Biogeochemistry, vol.64, pp.297-317, 2003.

C. Vázquez-gonzález, J. Fermán-almada, P. Moreno-casasola, and I. Espejel, Scenarios of vulnerability in coastal municipalities of tropical Mexico: an analysis of wetland land use, Ocean Coast Manag, vol.89, pp.11-19, 2014.

S. Villéger, R. Miranda, J. , F. Hernandez, D. Mouillot et al., Contrasting changes in taxonomic vs functional diversity of tropical fish assemblages after habitat degradation, Ecol Appl, vol.20, pp.1512-1522, 2010.

K. M. Wantzen, F. De-arruda, M. Voss, H. Boriss, and W. J. Junk, Seasonal isotopic shifts in fish of the Pantanal wetland, Brazil. Aquat Sci, vol.64, pp.239-251, 2002.

L. Zeng and D. Li, Development of in situ sensors for chlorophyll concentration measurement, J Sensors, vol.903509, p.16, 2015.