Horizontal gene transfer in the acquisition of novel traits by metazoans, Proc R Soc L B Biol Sci, vol.281, 2014. ,
Expression of multiple horizontally acquired genes is a hallmark of both vertebrate and invertebrate genomes, Genome Biol, vol.16, pp.1-13, 2015. ,
Impact of lateral transfers on the genomes of lepidoptera, Genes (Basel), vol.8, p.29120392, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-02138988
Horizontal gene transfer in eukaryotic evolution, Nat Rev Genet, vol.9, p.18591983, 2008. ,
Horizontal gene transfer : building the web of life, Nat Rev Genet, vol.16, pp.472-482, 2015. ,
Promiscuous DNA: horizontal transfer of transposable elements and why it matters for eukaryotic evolution, Trends Ecol Evol, vol.25, p.20591532, 2010. ,
Horizontal acquisition of transposable elements and viral sequences: patterns and consequences, Curr Opin Genet Dev, vol.49, p.29505963, 2018. ,
Massive horizontal transfer of transposable elements in insects, Proc Natl Acad Sci, vol.114, p.28416702, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01513704
Factors that affect the horizontal transfer of transposable elements, Curr Issues Mol Biol, vol.6, p.14632259, 2004. ,
Horizontal transposon transfer in eukarya: Detection, bias, and perspectives, Genome Biol Evol, vol.4, p.22798449, 2012. ,
DOI : 10.1093/gbe/evs055
URL : https://academic.oup.com/gbe/article-pdf/4/8/801/17916826/evs055.pdf
Population genomics supports baculoviruses as vectors of horizontal transfer of insect transposons, Nat Commun, vol.5, p.24556639, 2014. ,
URL : https://hal.archives-ouvertes.fr/hal-00955963
Continuous Influx of Genetic Material from Host to Virus Populations, PLOS Genet, vol.12, p.26829124, 2016. ,
DOI : 10.1371/journal.pgen.1005838
URL : https://hal.archives-ouvertes.fr/hal-01266766
A DNA barcodebased survey of terrestrial arthropods in the Society Islands of French Polynesia: host diversity within the SymbioCode project, Eur J Taxon, vol.272, pp.1-13, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01943797
Basic local alignment search tool, J Mol Biol, vol.215, p.2231712, 1990. ,
DOI : 10.1006/jmbi.1990.9999
Ultra-fast sequence clustering from similarity networks with SiLiX, BMC Bioinformatics. BioMed Central Ltd, vol.12, p.21513511, 2011. ,
DOI : 10.1186/1471-2105-12-116
URL : https://hal.archives-ouvertes.fr/hal-00698365
Widespread and frequent horizontal transfers of transposable elements in plants, Genome Res, vol.24, p.24518071, 2014. ,
URL : https://hal.archives-ouvertes.fr/hal-01218140
Analyzing Horizontal Transfer of Transposable Elements on a Large Scale: Challenges and Prospects, BioEssays, vol.40, p.29283188, 2018. ,
URL : https://hal.archives-ouvertes.fr/hal-01696095
VHICA, a New method to discriminate between vertical and horizontal transposon transfer: Application to the mariner family with in Drosophila, Mol Biol Evol, vol.33, pp.1094-1109, 2016. ,
The Age and Evolution of Non-LTR Retrotransposable Elements, Mol Biol Evol, vol.16, p.10368957, 1999. ,
Genes in Conflict: The Biology of Selfish Genetic Elements, 2006. ,
Revisiting horizontal transfer of transposable elements in Drosophila, Heredity (Edinb), vol.100, p.18431403, 2008. ,
URL : https://hal.archives-ouvertes.fr/hal-00266777
Vertical evolution and horizontal transfer of CR1 non-LTR retrotransposons and Tc1/mariner DNA transposons in lepidoptera species, Mol Biol Evol, vol.29, p.22826456, 2012. ,
Factors affecting transposition of the Himar1 mariner transposon in vitro, Genetics, vol.149, p.9584095, 1998. ,
A purified mariner transposase is sufficient to mediate transposition in vitro, EMBO J, vol.15, p.8895590, 1996. ,
DOI : 10.1002/j.1460-2075.1996.tb00930.x
URL : https://onlinelibrary.wiley.com/doi/pdf/10.1002/j.1460-2075.1996.tb00930.x
Transposition of the bamboo Marinerlike element Ppmar1 in yeast, Mol Phylogenet Evol, vol.109, p.28189615, 2017. ,
cis and trans factors affecting Mos1 mariner evolution and transposition in vitro, and its potential for functional genomics, Nucleic Acids Res, vol.28, p.10637331, 2000. ,
DOI : 10.1093/nar/28.3.784
URL : https://academic.oup.com/nar/article-pdf/28/3/784/9904940/280784.pdf
Post-Transcriptional Control of LINE-1 Retrotransposition by Cellular Host Factors in Somatic Cells, Front Cell Dev Biol, vol.4, p.27014690, 2016. ,
Dynamic interactions between transposable elements and their hosts, Nat Rev Genet. Nature Publishing Group, vol.12, p.21850042, 2011. ,
DOI : 10.1038/nrg3030
URL : http://europepmc.org/articles/pmc3192332?pdf=render
HnRNPL and nucleolin bind LINE-1 RNA and function as host factors to modulate retrotransposition, Nucleic Acids Res, vol.41, p.23161687, 2013. ,
DOI : 10.1093/nar/gks1075
URL : https://academic.oup.com/nar/article-pdf/41/1/575/3978083/gks1075.pdf
Selective silencing of euchromatic L1s revealed by genome-wide screens for L1 regulators, Nature, vol.553, p.29211708, 2018. ,
Human L1 Retrotransposition: cis Preference versus trans Complementation, Mol Cell Biol, vol.21, p.11158327, 2001. ,
Integration, regulation, and long-term stability of R2 retrotransposons, Microbiol Spectr, vol.3, pp.3-0011, 2015. ,
Widespread evidence for horizontal transfer of transposable elements across Drosophila genomes, Genome Biol, vol.18, p.22, 2009. ,
Pan-arthropod analysis reveals somatic piRNAs as an ancestral defence against transposable elements, Nat Ecol Evol. Springer US, vol.2, p.29203920, 2018. ,
URL : https://hal.archives-ouvertes.fr/hal-01657238
Introduction to the baculoviruses, their taxonomy, and evolution, Baculovirus Molecular Biology. Bethesda (MD): National Center for Biotechnology Information (US, pp.1-24, 2013. ,
, Virus Taxonomy, Ninth Report of the International Committee on Taxonomy of Viruses, pp.163-173, 2012.
Baculoviruses: Sophisticated Pathogens of Insects, PLoS Pathog, vol.9, p.24244160, 2013. ,
A virus mutant with an insertion of a copia-like transposable element, Nature, vol.299, p.6289125, 1982. ,
Acquisition of Host Cell DNA Sequences by Baculoviruses: Relationship Between Host DNA Insertions and FP Mutants of Autographa californica and Galleria mellonella Nuclear Polyhedrosis Viruses, J Virolgy, vol.47, pp.287-300, 1983. ,
7: a novel lepidopteran transposon found in Cydia pomonella granulosis virus, Virology, vol.207, p.7886941, 1995. ,
Horizontal escape of the novel Tc1-like lepidopteran transposon TCp3.2 into Cydia pomonella granulovirus, J Mol Evol, vol.46, p.9452523, 1998. ,
Gene organization and transcription of ted, a lepidopteran retrotransposon integrated within the baculovirus genome, Mol Cell Biol, vol.10, p.1692964, 1990. ,
Ecological networks to unravel the routes to horizontal transposon transfers, PLOS Biol, vol.15, p.28199335, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01608245
Parallel tagged sequencing on the 454 platform, Nat Protoc, vol.3, p.18274529, 2008. ,
BARCRAWL and BARTAB: software tools for the design and implementation of barcoded primers for highly multiplexed DNA sequencing, BMC Bioinformatics, vol.10, p.362, 2009. ,
Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities, Appl Environ Microbiol, vol.75, pp.7537-7541, 2009. ,
Genome sequencing in microfabricated high-density picolitre reactors, Nature, vol.437, p.16056220, 2005. ,
SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building, Mol Biol Evol, vol.27, pp.221-224, 2010. ,
URL : https://hal.archives-ouvertes.fr/lirmm-00511794
RAxML version 8: A tool for phylogenetic analysis and post-analysis of large phylogenies, Bioinformatics, vol.30, p.24451623, 2014. ,
Arthropod relationships revealed by phylogenomic analysis of nuclear protein-coding sequences, Nature. Nature Publishing Group, vol.463, pp.1079-1083, 2010. ,
TreeGraph 2: combining and visualizing evidence from different phylogenetic analyses, BMC Bioinformatics, vol.11, p.9, 2010. ,
APE: Analyses of phylogenetics and evolution in R language, Bioinformatics, vol.20, p.14734327, 2004. ,
URL : https://hal.archives-ouvertes.fr/ird-01887318
MACSE: Multiple alignment of coding SEquences accounting for frameshifts and stop codons, PLoS One, vol.6, p.21949676, 2011. ,
URL : https://hal.archives-ouvertes.fr/hal-01773250
FastTree 2-Approximately maximum-likelihood trees for large alignments, PLoS One, vol.5, p.20224823, 2010. ,
How Long Does Wolbachia Remain on Board?, Mol Biol Evol, vol.34, p.28201740, 2017. ,
URL : https://hal.archives-ouvertes.fr/hal-01524867