J. E. Adolf, C. L. Yeager, W. D. Miller, M. E. Mallonee, and L. W. Harding, Environmental forcing of phytoplankton floral composition, biomass, and primary productivity in Chesapeake Bay, USA. Estuar. Coast Shelf Sci, vol.67, pp.108-122, 2006.

A. Aminot and R. Kérouel, Méthodes en flux continu, Dosage Automatique Des Nutriments Dans Les Eaux Marines, Méthodes D'analyse En Milieu Marin, 2007.

A. Aminot and R. Kérouel, Hydrologie des écosystèmes marins: paramètres et analyses, Editions Ifremer. In: Méthodes d'analyse en milieu marin, 2004.

D. M. Anderson, P. M. Glibert, and J. M. Burkholder, Harmful algal blooms and eutrophication:nutrient sources, composition and comsequences, Estuaries, vol.25, pp.704-726, 2002.

M. J. Anderson, A new method for non-parametric multivariate analysis of variance, Austral Ecol, vol.26, pp.32-46, 2001.

P. Assmy and V. Smetacek, Algal blooms. Encyclopedia of Microbiology, Oxford, pp.27-41, 2009.

F. B. Aubry, G. Cossarini, F. Acri, M. Bastianini, F. Bianchi et al., Plankton communities in the northern Adriatic Sea: patterns and changes over the last 30 years, Estuar. Coast Shelf Sci, vol.115, pp.125-137, 2012.

F. Azam, T. Fenchel, J. Field, J. Gray, L. Meyer-reil et al., The ecological role of water-column microbes in the sea, Mar. Ecol. Prog. Ser, vol.10, pp.257-263, 1983.

A. D. Barton, A. J. Pershing, E. Litchman, N. R. Record, K. F. Edwards et al., The biogeography of marine plankton traits, Ecol. Lett, vol.16, pp.522-534, 2013.

S. Basu and K. Mackey, Phytoplankton as key mediators of the biological carbon pump: their responses to a changing climate, Sustainability, vol.10, 2018.

C. Belin, A. Daniel, E. Gauthier, L. Lampert, N. Neaud-masson et al., REPHY dataset -French Observation and Monitoring program for Phytoplankton and Hydrology in coastal waters. 1987-2016 Metropolitan data, 2017.

B. Berland, S. Maestrini, D. Grzebyk, and P. Thomas, Recent aspects of nutrition in the dinoflagellate Dinophysis cf. acuminata, Aquat. Microb. Ecol, vol.9, pp.191-198, 1995.

K. R. Bockstahler and D. W. Coats, Grazing of the mixotrophic dinoflagellate Gymnodinium sanguineum on ciliate populations of Chesapeake Bay, Mar. Biol, vol.116, pp.477-487, 1993.

G. Boge, N. Jean, J. Jamet, D. Jamet, and S. Richard, Seasonal changes in phosphatase activities in Toulon Bay (France), Mar. Environ. Res, vol.61, pp.1-18, 2006.
URL : https://hal.archives-ouvertes.fr/hal-01893688

D. G. Boyce, K. T. Frank, and W. C. Leggett, From mice to elephants: overturning the 'one size fits all' paradigm in marine plankton food chains, Ecol. Lett, vol.18, pp.504-515, 2015.

M. B. Brahim, M. Feki, W. Feki-shnoum, M. Mahfoudi, and A. Hamza, Factor driving heterotrophic dinoflagellate in relation to environment conditions in Kerkennah Islands (eastern coast of Tunisa), J. Coast. Life Med, vol.3, pp.686-690, 2015.

R. J. Brewin, N. J. Hardman-mountford, S. J. Lavender, D. E. Raitsos, T. Hirata et al., An intercomparison of bio-optical techniques for detecting dominant phytoplankton size class from satellite remote sensing, Remote Sens. Environ, vol.115, pp.325-339, 2011.

Z. Buric, K. Caput-mihalic, I. Cetinic, I. Ciglenecki, M. Caric et al., Occurrence of the rare microflagellates prorocentrum arcuatum issel and hermesinum adriaticum zacharias in the marine lake rogoznica, 2009.

, Acta Adriat, vol.1, pp.31-44

E. Buskey, Behavioral components of feeding selectivity of the heterotrophic dinoflagellate Protoperidinium pellucidum, Mar. Ecol. Prog. Ser, vol.153, pp.77-89, 1997.

M. Cabrini, D. Fornasaro, G. Cossarini, M. Lipizer, and D. Virgilio, Phytoplankton temporal changes in a coastal northern Adriatic site during the last 25 years, Estuar. Coast Shelf Sci, vol.115, pp.113-124, 2012.

E. Casella, P. Tepsich, X. Couvelard, R. M. Caldeira, and K. Schroeder, Ecosystem dynamics in the Liguro-Provençal Basin: the role of eddies in the biological production, Mediterr. Mar. Sci, vol.15, pp.274-286, 2014.

L. Chauvaud, F. Jean, O. Ragueneau, and G. Thouzeau, Long-term variation of the Bay of Brest ecosystem:benthic-pelagic coupling revisited, Mar. Ecol. Prog. Ser, vol.200, pp.35-48, 2000.
URL : https://hal.archives-ouvertes.fr/hal-00524757

A. Cid, J. Abalde, and C. Herrero, High yield mixotrophic cultures of the marine microalga Tetraselmis suecica (Kylin) Butcher (Prasinophyceae), J. Appl. Phycol, vol.4, pp.31-37, 1992.

J. E. Cloern, Our evolving conceptual model of the coastal eutrophication problem, Mar. Ecol. Prog. Ser, vol.210, pp.223-253, 2001.

J. E. Cloern, P. C. Abreu, J. Carstensen, L. Chauvaud, R. Elmgren et al., Human activities and climate variability drive fast-paced change across the world's estuarine-coastal ecosystems, Glob. Chang. Biol, vol.22, pp.513-529, 2016.

J. E. Cloern and R. Dufford, Phytoplankton community ecology: principles applied in San Francisco Bay, Mar. Ecol. Prog. Ser, vol.285, pp.11-28, 2005.

L. Coppola, L. Legendre, D. Lefevre, L. Prieur, V. Taillandier et al., Seasonal and inter-annual variations of dissolved oxygen in the northwestern Mediterranean Sea (DYFAMED site), Prog. Oceanogr, vol.162, pp.187-201, 2018.
URL : https://hal.archives-ouvertes.fr/hal-02024186

R. Costanza, R. De-groot, P. Sutton, S. Van-der-ploeg, S. J. Anderson et al., Changes in the global value of ecosystem services, Biological-Physical Interactions in the Sea, the Sea the Global Coastal Ocean, vol.26, pp.2002-297, 2014.

D. H. Cushing, A difference in structure between ecosystems in strongly stratified waters and in those that are only weakly stratified, J. Plankton Res, vol.11, pp.1-13, 1989.

F. Ortenzio and M. Ribera-d'alcalà, On the trophic regimes of the Mediterranean Sea: a satellite analysis, Biogeosciences, vol.6, pp.139-148, 2009.

M. De-cáceres and P. Legendre, Associations between species and groups of sites indices and statistical inference, Ecology, vol.12, pp.3566-3574, 2009.

M. De-cáceres, P. Legendre, and M. Moretti, Improving indicator species analysis by combining groups of sites, Oikos, vol.119, pp.1674-1684, 2010.

R. De-groot, L. Brander, S. Van-der-ploeg, R. Costanza, F. Bernard et al., Global estimates of the value of ecosystems and their services in monetary units, Ecosyst. Serv, vol.1, pp.50-61, 2012.

F. Delpy, B. Serranito, J. Jamet, G. Grégori, C. Le-poupon et al., Picoand nanophytoplankton dynamics in two coupled but contrasting coastal bays in the NW Mediterranean sea (France), Estuar. Coasts, 2018.

M. Devlin, M. Best, D. Coates, E. Bresnan, S. O'boyle et al., Establishing boundary classes for the classification of UK marine waters using phytoplankton communities, Mar. Pollut. Bull, vol.55, pp.91-103, 2007.

A. N. Dodson and W. H. Thomas, Concentrating plankton in a gentle fashion, Limnol. Oceanogr, vol.9, pp.455-456, 1964.

H. W. Ducklow, S. C. Doney, and D. K. Steinberg, Contributions of long-term research and time-series observations to marine ecology and biogeochemistry, Annu. Rev. Mar. Sci, vol.1, pp.279-302, 2009.

M. Dufrene and P. Legendre, Species assemblages and indicator species: the need for a flexible asymmetrical approach, Journal. Monogr, vol.67, pp.345-366, 1997.

C. Dufresne, C. Duffa, and V. Rey, Wind-forced circulation model and water exchanges through the channel in the Bay of Toulon. Ocean Dynam, vol.64, pp.209-224, 2014.

M. A. Faust and R. A. Gulledge, Identifying harmful marine dinoflagellates, Contrib. U. S. Natl. Herb, vol.4, pp.1-144, 2002.

K. J. Flynn, D. K. Stoecker, A. Mitra, J. A. Raven, P. M. Glibert et al., Misuse of the phytoplankton-zooplankton dichotomy: the need to assign organisms as mixotrophs within plankton functional types, J. Plankton Res, vol.35, pp.3-11, 2013.

M. Garrido, B. Koeck, A. Goffart, A. Collignon, J. Hecq et al., Contrasting patterns of phytoplankton assemblages in two coastal ecosystems in relation to environmental factors (corsica, NW Mediterranean sea), Diversity, vol.6, pp.296-322, 2014.

A. Goffart, J. Hecq, and L. Legendre, Drivers of the winter-spring phytoplankton bloom in a pristine NW Mediterranean site, the Bay of Calvi (Corsica): a long-term study, Prog. Oceanogr, vol.137, pp.121-139, 1979.

B. Serranito, Estuarine, Coastal and Shelf Science

A. Goffart, J. Hecq, and L. Legendre, Changes in the development of the winter-spring phytoplankton bloom in the Bay of Calvi (NW Mediterranean) over the last two decades: a response to changing climate, Mar. Ecol. Prog. Ser, vol.236, pp.45-60, 2002.

F. Gómez and G. Gorsky, Annual microplankton cycles in villefranche bay, Ligurian Sea, NW mediterranean, J. Plankton Res, vol.25, pp.323-339, 2003.

J. P. Grover, Influence of cell shape and size on algal competitive ability, J. Phycol, vol.25, pp.402-405, 1989.

L. Guidi, S. Chaffron, L. Bittner, D. Eveillard, A. Larhlimi et al., Plankton networks driving carbon export in the oligotrophic ocean, 2016.
URL : https://hal.archives-ouvertes.fr/hal-01275276

K. Guihou, J. Marmain, Y. Ourmières, A. Molcard, B. Zakardjian et al., A case study of the mesoscale dynamics in the North-Western Mediterranean Sea: a combined data-model approach, Ocean Dynam, vol.63, pp.793-808, 2013.
URL : https://hal.archives-ouvertes.fr/hal-00833634

B. Hansen, P. K. Bjornsen, and P. J. Hansen, The size ratio between planktonic predators and their prey, Limnol. Oceanogr, vol.39, pp.395-403, 1994.

G. Hansen, . Moestrup, and K. R. Roberts, Fine structural observations on Gonyaulax spinifera (Dinophyceae), with special emphasis on the flagellar apparatus, Phycologia, vol.35, pp.354-366, 1996.

L. W. Harding, C. L. Gallegos, E. S. Perry, W. D. Miller, J. E. Adolf et al., Long-term trends of nutrients and phytoplankton in chesapeake bay, Estuar. Coasts, vol.39, pp.664-681, 2016.

L. Heimbürger, H. Lavigne, C. Migon, F. D'ortenzio, C. Estournel et al., Temporal variability of vertical export flux at the DYFAMED time-series station (Northwestern Mediterranean Sea), Prog. Oceanogr, vol.119, pp.59-67, 2013.

H. Hillebrand, C. Dürselen, D. Kirschtel, U. Pollingher, and T. Zohary, Biovolume calculation for pelagic and benthic microalgae, J. Phycol, vol.35, pp.403-424, 1999.

H. Höglander, B. Karlson, M. Johansen, J. Walve, and A. Andersson, Overview of coastal phytoplankton indicators and their potential use in Swedish waters, WATERS Report Series, vol.5, 2013.

I. Ignatiades, Redefinition of cell size classification of phytoplankton -a potential tool for improving the quality and assurance of data interpretation, Mediterr. Mar. Sci, vol.17, pp.56-64, 2015.

L. Ignatiades, Mixotrophic and heterotrophic dinoflagellates in eutrophic coastal waters of the Aegean Sea (eastern Mediterranean Sea), pp.39-48, 2012.

L. Ignatiades and O. Gotsis-skretas, A review on toxic and harmful algae in Greek coastal waters (E. Mediterranean sea), Toxins, vol.2, pp.1019-1037, 2010.

A. Jaanus, K. Toming, S. Hällfors, K. Kaljurand, and I. Lips, Potential phytoplankton indicator species for monitoring Baltic coastal waters in the summer period, Hydrobiologia, vol.629, pp.157-168, 2009.

D. M. Jacobson and D. M. Anderson, Widespread phagocytosis of ciliates and other protists by marine mixotrophic and heterotrophic thecate dinoflagellates, J. Phycol, vol.32, pp.279-285, 1996.

J. L. Jamet, G. Bogé, S. Richard, C. Geneys, and D. Jamet, The zooplankton community in bays of Toulon area, Hydrobiologia, vol.457, pp.155-165, 2001.

J. Jamet, N. Jean, G. Bogé, S. Richard, and D. Jamet, Plankton succession and assemblage structure in two neighbouring littoral ecosystems in the north-west Mediterranean Sea, Mar. Freshw. Res, vol.56, 2005.

H. Jeong and M. Latz, Growth and grazing rates of the heterotrophic dinoflagellates Protoperidinium spp. on red tide dinoflagellates, Mar. Ecol. Prog. Ser, vol.106, pp.173-185, 1994.

H. J. Jeong, Predation by the heterotrophic dinoflagellate Protoperidinium cf. divergens on copepod eggs and early naupliar stages, Mar. Ecol. Prog. Ser, vol.114, pp.203-203, 1994.

H. J. Jeong, Y. D. Yoo, J. S. Kim, K. A. Seong, N. S. Kang et al., Growth, feeding and ecological roles of the mixotrophic and heterotrophic dinoflagellates in marine planktonic food webs, Ocean Sci. J, vol.45, pp.65-91, 2010.

A. E. Kemp and T. A. Villareal, The case of the diatoms and the muddled mandalas: time to recognize diatom adaptations to stratified waters, Prog. Oceanogr, vol.167, pp.138-149, 2018.

R. Killick and I. A. Eckley, changepoint : an R Package for Changepoint Analysis, J. Stat. Softw, vol.58, pp.1-19, 2014.
DOI : 10.18637/jss.v058.i03

URL : https://www.jstatsoft.org/index.php/jss/article/view/v058i03/v58i03.pdf

S. Kim, Y. Kang, H. Kim, W. Yih, D. Coats et al., Growth and grazing responses of the mixotrophic dinoflagellate Dinophysis acuminata as functions of light intensity and prey concentration, Aquat. Microb. Ecol, vol.51, pp.301-310, 2008.

K. H. Lee, H. J. Jeong, E. Y. Yoon, S. H. Jang, H. S. Kim et al., Feeding by common heterotrophic dinoflagellates and a ciliate on the red-tide ciliate Mesodinium rubrum, ALGAE, vol.29, pp.153-163, 2014.

P. Legendre and D. Borcard, Box-Cox-chord transformations for community composition data prior to beta diversity analysis, 2018.
DOI : 10.1111/ecog.03498

P. Legendre, S. Dallot, and L. Legendre, Succession of species within a community: chronological clustering, with applications to marine and freshwater zooplankton, Am. Nat, vol.125, pp.257-288, 1985.

P. Legendre and E. Gallagher, Ecologically meaningful transformations for ordination of species data, Oecologia, vol.129, pp.271-280, 2001.
DOI : 10.1007/s004420100716

E. Litchman, C. A. Klausmeier, O. M. Schofield, and P. G. Falkowski, The role of functional traits and trade-offs in structuring phytoplankton communities: scaling from cellular to ecosystem level, Ecol. Lett, vol.10, pp.1170-1181, 2007.

S. López-urrutia, E. Martin, R. P. Harris, and X. Irigoien, Scaling the metabolic balance of the oceans, Proc. Natl. Acad. Sci. Unit. States Am, vol.103, pp.8739-8744, 2006.

J. W. Lund, C. Kipling, and E. D. Le-cren, The inverted microscope method of estimating algal numbers and the statistical basis of estimations by counting, Hydrobiologia, vol.11, pp.143-170, 1958.

E. Marañón, Cell size as a key determinant of phytoplankton metabolism and community structure, Annu. Rev. Mar. Sci, vol.7, pp.241-264, 2015.

R. Margalef, Life-forms of phytoplankton as survival alternatives in an unstable environment, Oceanol. Acta, vol.1, pp.493-509, 1978.

R. Margalef, Succession in marine populations, Adv. Front. Plant Sci, pp.137-188, 1963.

J. C. Marty and J. Chiavérini, Hydrological changes in the Ligurian Sea (NW Mediterranean, DYFAMED site) during 1995-2007 and biogeochemical consequences, Biogeosciences, vol.7, pp.2117-2128, 2010.

M. G. Mazzocchi, E. D. Christou, I. D. Capua, M. Fernández-de-puelles, S. Fonda-umani et al., Temporal variability of Centropages typicus in the Mediterranean Sea over seasonal-to-decadal scales, Prog. Oceanogr, vol.72, pp.214-232, 2007.

B. Mcgill, B. Enquist, E. Weiher, and M. Westoby, Rebuilding community ecology from functional traits, Trends Ecol. Evol, vol.21, pp.178-185, 2006.

A. Mitra and K. J. Flynn, Modelling mixotrophy in harmful algal blooms: more or less the sum of the parts?, J. Mar. Syst, vol.83, pp.158-169, 2010.

Z. A. Mohamed, Potentially harmful microalgae and algal blooms in the Red Sea: current knowledge and research needs, Mar. Environ. Res, 2018.
DOI : 10.1016/j.marenvres.2018.06.019

J. Murphy and J. P. Riley, A modified single solution method for the determination of phosphate in natural waters, Anal. Chim. Acta, pp.31-36, 1962.

A. Nair, S. Sathyendranath, T. Platt, J. Morales, V. Stuart et al., Remote sensing of phytoplankton functional types, Remote Sens. Environ, vol.112, pp.3366-3375, 2008.

L. Naselli-flores, J. Padisák, and M. Albay, Shape and size in phytoplankton ecology: do they matter?, Hydrobiologia, vol.578, pp.157-161, 2007.

R. Nicolau, A. Galera-cunha, and Y. Lucas, Transfer of nutrients and labile metals from the continent to the sea by a small Mediterranean river, Chemosphere, vol.63, pp.469-476, 2006.

R. Nicolau, Y. Lucas, P. Merdy, and M. Raynaud, Base flow and stormwater net fluxes of carbon and trace metals to the Mediterranean sea by an urbanized small river. Water Res, vol.46, pp.6625-6637, 2012.
URL : https://hal.archives-ouvertes.fr/hal-02009763

G. Novarino, D. K. Mills, and F. Hannah, Pelagic flagellate populations in the southern North Sea, 1988-89. L Qualitative observations, J. Plankton Res, vol.29, 1997.

S. Nunes, M. Latasa, J. Gasol, and M. Estrada, Seasonal and interannual variability of phytoplankton community structure in a Mediterranean coastal site, Mar. Ecol. Prog. Ser, vol.592, pp.57-75, 2018.

I. Olenina, S. Hajdu, L. Edler, A. Andersson, N. Wasmund et al., Biovolumes and size-classes of phytoplankton in the Baltic Sea, HELCOM Balt. Sea Environ. Proc, p.114, 2006.

K. Olli, A. Clarke, . Danielsson, J. Aigars, D. J. Conley et al., Diatom stratigraphy and long-term dissolved silica concentrations in the Baltic Sea, J. Mar. Syst, vol.73, pp.284-299, 2008.

J. E. O'reilly, S. Maritorena, B. G. Mitchell, D. A. Siegel, K. L. Carder et al., Ocean color chlorophyll algorithms for SeaWiFS, J. Geophys. Res. Oceans, vol.103, pp.24937-24953, 1998.

M. G. Park, M. Kim, and M. Kang, A dinoflagellate Amylax triacantha with plastids of the cryptophyte origin: phylogeny, feeding mechanism, and growth and grazing responses, J. Eukaryot. Microbiol, vol.60, pp.363-376, 2013.

O. Pasqueron-de-fommervault, C. Migon, F. D???ortenzio, M. Ribera-d'alcalà, and L. Coppola, Temporal variability of nutrient concentrations in the northwestern Mediterranean sea (DYFAMED time-series station). Deep-Sea Res, Part A Oceanogr. Res. Pap, vol.100, pp.1-12, 2015.
URL : https://hal.archives-ouvertes.fr/hal-01130192

F. Pougnet, J. Schäfer, L. Dutruch, C. Garnier, E. Tessier et al., Sources and historical record of tin and butyl-tin species in a Mediterranean bay, Environ. Sci. Pollut. Res, vol.21, pp.6640-6651, 2014.

A. C. Redfield, B. H. Ketchum, and F. A. Richards, The influence of organims on the composition of sea-water, The Influence of Organisms on the Composition of Seawater, the Sea. Hill MN, pp.26-77, 1963.

C. S. Reynolds, Ecology of Phytoplankton, 2006.

S. Richard and J. Jamet, An unusual distribution of Oithona nana Griesbrecht (1892) (Crustacea: cyclopoida) in a bay: the case of Toulon bay (France, Mediterranean sea), J. Coast. Res, vol.17, pp.957-963, 2001.

R. B. Root, The niche exploitation pattern of the blue-gray gnatcatcher, Ecol. Monogr, vol.37, pp.317-350, 1967.

J. Rossi, Structure and succession of plankton communities in two mediterranean neighbouring coastal ecosystems, New Oceanography Research Development, pp.1-14, 2009.

J. F. Saad, F. Unrein, P. M. Tribelli, N. López, and I. Izaguirre, Influence of lake trophic conditions on the dominant mixotrophic algal assemblages, J. Plankton Res, 2016.

A. Sakka, L. Legendre, M. Gosselin, and B. Delesalle, Structure of the oligotrophic planktonic food web under low grazing of heterotrophic bacteria:Takapoto Atoll, French Polynesia, Mar. Ecol. Prog. Ser, vol.197, pp.1-17, 2000.

B. Serranito, Estuarine, Coastal and Shelf Science

C. Sammari, C. Millot, and L. Prieur, Aspects of the seasonal and mesoscale variabilities of the Nothern current in the western Mediterranean Sea inferred from the PRO-LIG-2 and PROS-6 experiments, Deep Sea Res. Part I, vol.42, pp.893-917, 1995.

B. Serranito, A. Aubert, L. Stemmann, N. Rossi, and J. L. Jamet, Proposition of indicators of anthropogenic pressure in the Bay of Toulon (Mediterranean Sea) based on zooplankton time-series, Cont. Shelf Res, vol.121, pp.3-12, 2016.
URL : https://hal.archives-ouvertes.fr/hal-01328957

J. Shim, T. A. Klochkova, J. Han, G. Kim, Y. Yoo et al., Comparative proteomics of the mixotrophic dinoflagellate Prorocentrum micans growing in different trophic modes, ALGAE, vol.26, pp.87-96, 2011.

J. M. Sieburth, V. Smetacek, and J. Lenz, Pelagic ecosystem structure: heterotrophic compartiments of the plankton and their relationship to plankton size fractions, Limnol. Oceanogr, vol.23, issue.6, pp.1256-1263, 1978.

I. Siokou-frangou, U. Christaki, M. G. Mazzocchi, M. Montresor, M. Ribera-d'alcalá et al., Plankton in the open Mediterranean sea: a review, Biogeosciences, vol.7, pp.1543-1586, 2010.
URL : https://hal.archives-ouvertes.fr/hal-00767891

S. Skeji?, A. Car, I. Marasovi?, S. Jozic, M. Bu?an?i? et al., Morphology and ecology of the poorly known dinoflagellate prorocentrum arcuatum (dinophyceae) from the medulin bay (eastern Adriatic sea), Acta Adriat, vol.58, pp.41-52, 2017.

G. Smalley, D. Coats, and D. Stoecker, Feeding in the mixotrophic dinoflagellate Ceratium furca is influenced by intracellular nutrient concentrations, Mar. Ecol. Prog. Ser, vol.262, pp.137-151, 2003.

G. W. Smalley and D. W. Coats, Ecology of the red-tide dinoflagellate ceratium furca: distribution, mixotrophy, and grazing impact on ciliate populations of chesapeake bay, J. Eukaryot. Microbiol, vol.49, pp.63-73, 2002.

T. J. Smayda and C. S. Reynolds, Strategies of marine dinoflagellate survival and some rules of assembly, J. Sea Res, vol.49, issue.02, pp.219-227, 2003.

T. J. Smayda and C. S. Reynolds, Community assembly in marine phytoplankton: application of recent models to harmful dinoflagellate blooms, J. Plankton Res, vol.23, pp.447-461, 2001.

V. Smetacek and J. E. Cloern, OCEANS: on phytoplankton trends, Science, vol.319, pp.1346-1348, 2008.

S. Somot, F. Sevault, and M. Déqué, Transient climate change scenario simulation of the Mediterranean Sea for the twenty-first century using a high-resolution ocean circulation model, Clim. Dyn, vol.27, pp.851-879, 2006.

K. Spilling, K. Olli, J. Lehtoranta, A. Kremp, L. Tedesco et al., Shifting diatom-dinoflagellate dominance during spring bloom in the Baltic Sea and its potential effects on biogeochemical cycling, Front. Mar. Sci, vol.5, 2018.

D. K. Stoecker, Mixotrophy among Dinoflagellates1, J. Eukaryot. Microbiol, vol.46, pp.397-401, 1999.

J. D. Strickland and T. R. Parsons, A practical handbook of seawater analysis -determination of reactive phosphorus, Journal of the Fisheries Research Board of Canada, pp.49-56, 1968.

J. Sun and D. Liu, Geometric models for calculating cell biovolume and surface area for phytoplankton, J. Plankton Res, vol.25, pp.1331-1346, 2003.
URL : https://hal.archives-ouvertes.fr/hal-01663379

I. Taupier-letage and C. Millot, General hydrodynamical features in the Ligurian Sea inferred from the DYOME experiment, Oceanol. Acta, vol.9, pp.119-131, 1986.

I. Taupier-letage, J. Piazzola, and B. Zakardjian, Les îles d'Hyères dans le système de circulation marine et atmosphérique de la Méditerranée, Sci. Rep. Port-Cros Natl. Park, vol.27, pp.29-52, 2013.

E. Tessier, C. Garnier, J. Mullot, V. Lenoble, M. Arnaud et al., Study of the spatial and historical distribution of sediment inorganic contamination in the Toulon bay (France), Mar. Pollut. Bull, vol.62, pp.2075-2086, 2011.
URL : https://hal.archives-ouvertes.fr/hal-01096845

P. Tett, C. Carreira, D. K. Mills, S. Van-leeuwen, J. Foden et al., Use of a Phytoplankton Community Index to assess the health of coastal waters, ICES J. Mar. Sci. J. Cons, vol.65, pp.1475-1482, 2008.

P. Tett, R. Gowen, D. Mills, T. Fernandes, L. Gilpin et al., Defining and detecting undesirable disturbance in the context of marine eutrophication, Mar. Pollut. Bull, vol.55, pp.282-297, 2007.

P. Tett, R. Gowen, S. Painting, M. Elliott, R. Forster et al., Framework for understanding marine ecosystem health, Mar. Ecol. Prog. Ser, vol.494, pp.1-27, 2013.

C. Totti, T. Romagnoli, S. Accoroni, A. Coluccelli, M. Pellegrini et al., Phytoplankton communities in the northwestern Adriatic Sea: interdecadal variability over a 30-years period (1988-2016) and relationships with meteoclimatic drivers, J. Mar. Syst, vol.193, pp.137-153, 2019.

P. Tréguer and P. Le-corre, Manuel d'analyse des sels nutritifs dans l'eau de mer (utilisation de l'AutoAnalyser II Technicon (r)), 1975.

I. F. Trigo and T. D. Davies, Decline in Mediterranean rainfall caused by weakening of Mediterranean cyclones, Geophys. Res. Lett, vol.27, pp.2913-2916, 2000.

J. Uitz, D. Stramski, B. Gentili, F. D'ortenzio, and H. Claustre, Estimates of phytoplankton class-specific and total primary production in the Mediterranean Sea from satellite ocean color observations: PRIMARY PRODUCTION IN THE MEDITER-RANEAN, Glob. Biogeochem. Cycles, vol.26, pp.1-10, 2012.

H. Utermöhl, Zur Vervollkommnung der quantitativen, Phytoplankton-Methodik. Mitt. Int. Ver. Fuer Theor. Unde Amgewandte Limnol, pp.1-38, 1958.

M. R. Vadrucci, M. Cabrini, and A. Basset, Biovolume determination of phytoplankton guilds in transitional water ecosystems of Mediterranean Ecoregion, Transitional Waters Bull, pp.83-102, 2007.

M. R. Vadrucci, C. Mazziotti, and A. Fiocca, Cell biovolume and surface area in phytoplankton of Mediterranean transitional water ecosystems: methodological aspects, Transitional Waters Bull, vol.7, pp.100-123, 2013.

M. Vargas-yáñez, M. Jesús-garcía, J. Salat, M. C. García-martínez, J. Pascual et al., Warming trends and decadal variability in the Western Mediterranean shelf, Glob. Planet. Chang, vol.63, pp.177-184, 2008.

M. Vargas-yáñez, F. Moya, M. C. García-martínez, E. Tel, P. Zunino et al., Climate change in the western Mediterranean sea 1900-2008, J. Mar. Syst, vol.82, pp.171-176, 2010.

M. Vila and M. Maso, Phytoplankton functional groups and harmful algal species in anthropogenically impacted waters of the NW Mediterranean Sea, Sci. Mar, vol.69, pp.31-45, 2005.

S. Wang, M. E. Maltrud, S. M. Burrows, S. M. Elliott, and P. Cameron-smith, Impacts of shifts in phytoplankton community on clouds and climate via the sulfur cycle, Glob. Biogeochem. Cycles, vol.32, pp.1005-1026, 2018.

B. A. Ward and M. J. Follows, Marine mixotrophy increases trophic transfer efficiency, mean organism size, and vertical carbon flux, Proc. Natl. Acad. Sci. Unit. States Am, vol.113, pp.2958-2963, 2016.
URL : https://hal.archives-ouvertes.fr/hal-01483274

G. Weithoff and B. E. Beisner, Measures and approaches in trait-based phytoplankton community ecology -from freshwater to marine ecosystems, Front. Mar. Sci, vol.6, 2019.

G. Weithoff and A. Wacker, The mode of nutrition of mixotrophic flagellates determines the food quality for their consumers, Funct. Ecol, vol.21, pp.1092-1098, 2007.

A. Yamaguchi and T. Horiguchi, Molecular phylogenetic study of the heterotrophic dinoflagellate genus Protoperidinium (Dinophyceae) inferred from small subunit rRNA gene sequences, Phycol. Res, vol.53, pp.30-42, 2005.

Y. D. Yoo, H. J. Jeong, N. S. Kang, J. Y. Song, K. Y. Kim et al., Feeding by the newly described mixotrophic dinoflagellate Paragymnodinium shiwhaense : feeding mechanism, prey species, and effect of prey concentration, J. Eukaryot. Microbiol, vol.57, pp.145-158, 2010.