S. Aljanabi, Universal and rapid salt-extraction of high quality genomic DNA for PCR-based techniques, Nucleic Acids Res, vol.25, pp.4692-4693, 1997.

A. Amar, B. E. Arroyo, and V. Bretagnolle, Post-fledging dependence and dispersal in hacked and wild Montagu's Harriers Circus pygargus, Ibis, vol.142, pp.21-28, 2008.

J. Andreu and E. Barba, Breeding dispersal of Great Tits Parus major in a homogeneous habitat: effects of sex, age, and mating status, Ardea-Wageningen, vol.94, pp.1-45, 2006.

T. Antao, A. Lopes, and R. J. Lopes, LOSITAN: a workbench to detect molecular adaptation based on a Fst-outlier method, BMC Bioinform, vol.9, p.323, 2008.

H. Araki and C. Schmid, Is hatchery stocking a help or harm?, Aquaculture, vol.308, pp.2-11, 2010.

K. Belkhir, P. Borsa, L. Chikhi, N. Raufaste, and F. Bonhomme, GENETIX 4.05, logiciel sous Windows TM pour la génétique des populations. Laboratoire Génome, Populations, Interactions, CNRS UMR 5000, 2004.

J. M. Bettinger and P. W. Bettoli, Fate, dispersal, and persistence of recently stocked and resident rainbow trout in a Tennessee tailwater, North Am J Fish Manag, vol.22, pp.425-432, 2002.

S. Blanchet, D. J. Páez, L. Bernatchez, and J. J. Dodson, An integrated comparison of captive-bred and wild Atlantic salmon (Salmo salar): implications for supportive breeding programs, Biol Conserv, vol.141, pp.1989-1999, 2008.

S. Blanchet, L. Bernatchez, and J. J. Dodson, Does interspecific competition influence relationships between heterozygosity and fitness-related behaviors in juvenile Atlantic salmon (Salmo salar)?, Behav Ecol Sociobiol, vol.63, issue.4, pp.605-615, 2009.

D. I. Bolnick and P. Nosil, Natural selection in populations subject to a migration load, Evolution, vol.61, pp.2229-2243, 2007.

R. J. Burnside, N. J. Collar, K. M. Scotland, and P. M. Dolman, Survival rates of captive-bred Asian Houbara Chlamydotis macqueenii in a hunted migratory population, Ibis, vol.158, pp.353-361, 2016.

M. E. Cagigas, E. Vazquez, G. Blanco, and J. A. Sanchez, Genetic effects of introduced hatchery stocks on indigenous brown trout (Salmo trutta L.) populations in Spain, Ecol Freshw Fish, vol.8, pp.141-150, 1999.

C. Grant, E. H. Nichols, J. D. Lowe, W. H. Fagan, and W. F. , Use of multiple dispersal pathways facilitates amphibian persistence in stream networks, Proc Natl Acad Sci, vol.107, pp.6936-6940, 2010.

M. R. Christie, M. L. Marine, and S. E. Fox, A single generation of domestication heritably alters the expression of hundreds of genes, Nat Commun, vol.7, p.10676, 2016.

J. Clobert, Dispersal ecology and evolution, 2012.

L. Conti, L. Comte, B. Hugueny, and G. Grenouillet, Drivers of freshwater fish colonisations and extirpations under climate change, Ecography, vol.38, pp.510-519, 2015.

J. M. Cornuet, S. Piry, and G. Luikart, New methods employing multilocus genotypes to select or exclude populations as origins of individuals, Genetics, vol.153, pp.1989-2000, 1999.
URL : https://hal.archives-ouvertes.fr/halsde-00295518

J. Cote, J. Clobert, and T. Brodin, Personality-dependent dispersal: characterization, ontogeny and consequences for spatially structured populations, Philos Trans R Soc B, vol.365, pp.4065-4076, 2010.
URL : https://hal.archives-ouvertes.fr/hal-00602125

R. Cressman and V. K?ivan, Migration dynamics for the ideal free distribution, Am Nat, vol.168, pp.384-397, 2006.

J. Cucherousset, D. Ombredane, and K. Charles, A continuum of life history tactics in a brown trout (Salmo trutta) population, Can J Fish Aquat Sci, vol.62, pp.1600-1610, 2005.
URL : https://hal.archives-ouvertes.fr/hal-01453693

F. Cyr and B. Angers, Historical process lead to false genetic signal of current connectivity among populations, Genetica, vol.139, pp.1417-1428, 2011.

M. Dahirel, E. Olivier, and A. Guiller, Movement propensity and ability correlate with ecological specialization in European land snails: comparative analysis of a dispersal syndrome, J Anim Ecol, vol.84, pp.228-238, 2015.

L. Debeffe, N. Morellet, and N. Bonnot, The link between behavioural type and natal dispersal propensity reveals a dispersal syndrome in a large herbivore, Proc R Soc B, vol.281, p.20140873, 2014.
URL : https://hal.archives-ouvertes.fr/hal-02071556

N. J. Dingemanse, C. Both, and A. J. Van-noordwijk, Natal dispersal and personalities in great tits (Parus major), Proc R Soc B, vol.270, pp.741-747, 2003.

J. M. Drake, Heterosis, the catapult effect and establishment success of a colonizing bird, Biol Lett, vol.2, pp.304-307, 2006.

D. A. Earl, STRU CTU RE HARVESTER: a website and program for visualizing STRU CTU RE output and implementing the Evanno method, Conserv Genet Resour, vol.4, pp.359-361, 2012.

B. C. Ebner and J. D. Thiem, Monitoring by telemetry reveals differences in movement and survival following hatchery or wild rearing of an endangered fish, Mar Freshw Res, vol.60, p.45, 2009.

P. Edelaar and D. I. Bolnick, Non-random gene flow: an underappreciated force in evolution and ecology, Trends Ecol Evol, vol.27, pp.659-665, 2012.

P. Edelaar, A. M. Siepielski, and J. Clobert, Matching habitat choice causes directed gene flow: a neglected dimension in evolution and ecology, Evolution, vol.62, pp.2462-2472, 2008.
DOI : 10.1111/j.1558-5646.2008.00459.x

URL : https://onlinelibrary.wiley.com/doi/pdf/10.1111/j.1558-5646.2008.00459.x

G. Evanno, S. Regnaut, and J. Goudet, Detecting the number of clusters of individuals using the software structure: a simulation study, Mol Ecol, vol.14, pp.2611-2620, 2005.

B. Facon, P. Jarne, J. P. Pointier, and P. David, Hybridization and invasiveness in the freshwater snail Melanoides tuberculata: hybrid vigour is more important than increase in genetic variance: hybrid vigour in an invasive snail, J Evol Biol, vol.18, pp.524-535, 2005.

R. Frankham, Genetic adaptation to captivity in species conservation programs, Mol Ecol, vol.17, pp.325-333, 2008.

R. Frankham, H. Hemmer, and O. A. Ryder, Selection in captive populations, Zoo Biol, vol.5, pp.127-138, 1986.
DOI : 10.1002/zoo.1430050207

N. B. Frumkin, T. W. Wey, and M. Exnicios, Inter-annual patterns of aggression and pair bonding in captive American flamingos (Phoenicopterus ruber): flamingo behavior, Zoo Biol, vol.35, pp.111-119, 2016.

H. Gachot-neveu, P. Lefevre, and J. Roeder, Genetic detection of sex-biased and age-biased dispersal in a population of wild carnivore, the red fox, Vulpes vulpes, Zoolog Sci, vol.26, pp.145-152, 2009.
URL : https://hal.archives-ouvertes.fr/hal-00410397

F. Geiser and C. Ferguson, Intraspecific differences in behaviour and physiology: effects of captive breeding on patterns of torpor in feathertail gliders, J Comp Physiol B, vol.171, pp.569-576, 2001.

J. Goudet, FSTAT (Version 1.2): a computer program to calculate F-statistics, J Hered, vol.86, pp.485-486, 1995.
DOI : 10.1093/oxfordjournals.jhered.a111627

URL : http://doc.rero.ch/record/294716/files/86-6-485.pdf

D. Gutiérrez and R. Menéndez, Patterns in the distribution, abundance and body size of carabid beetles (Coleoptera: Caraboidea) in relation to dispersal ability, J Biogeogr, vol.24, pp.903-914, 2003.

M. M. Hansen, E. E. Nielsen, D. Bekkevold, and K. Mensberg, Admixture analysis and stocking impact assessment in brown trout (Salmo trutta), estimated with incomplete baseline data, Can J Fish Aquat Sci, vol.58, pp.1853-1860, 2001.

M. M. Hansen, D. J. Fraser, K. Meier, and K. Mensberg, Sixty years of anthropogenic pressure: a spatio-temporal genetic analysis of brown trout populations subject to stocking and population declines, Mol Ecol, vol.18, pp.2549-2562, 2009.

I. Hanski, Metapopulation dynamics, Nature, vol.396, pp.41-49, 1998.

J. F. Harrison, O. R. Taylor, . Jr, and H. G. Hall, The flight physiology of reproductives of Africanized, European, and hybrid Honeybees (Apis mellifera), Physiol Biochem Zool, vol.78, pp.153-162, 2005.

S. Hudina, K. ?ganec, and K. Hock, Differences in aggressive behaviour along the expanding range of an invasive crayfish: an important component of invasion dynamics, Biol Invasions, vol.17, pp.3101-3112, 2015.

M. Jakobsson and N. A. Rosenberg, CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure, Bioinformatics, vol.23, pp.1801-1806, 2007.

J. R. Johnson, B. M. Fitzpatrick, and H. B. Shaffer, Retention of lowfitness genotypes over six decades of admixture between native and introduced tiger salamanders, BMC Evol Biol, vol.10, p.147, 2010.

J. I. Johnsson and M. V. Abrahams, Interbreeding with domestic strain increases foraging under threat of predation in juvenile steelhead trout (Oncorhynchus mykiss): an experimental study, Can J Fish Aquat Sci, vol.48, pp.243-247, 1991.

J. I. Johnsson, F. Nobbelin, and T. Bohlin, Territorial competition among wild brown trout fry: effects of ownership and body size, J Fish Biol, vol.54, pp.469-472, 1999.

T. Jombart, adegenet: a R package for the multivariate analysis of genetic markers, Bioinformatics, vol.24, pp.1403-1405, 2008.
URL : https://hal.archives-ouvertes.fr/hal-00428105

J. Jorgensen and S. Berg, Stocking experiments with 0 + and 1 + trout parr, Salmo trutta L., of wild and hatchery origin: 2. Poststocking movements, J Fish Biol, vol.39, pp.171-180, 1991.

S. R. Keller and D. R. Taylor, Genomic admixture increases fitness during a biological invasion: admixture increases fitness during invasion, J Evol Biol, vol.23, pp.1720-1731, 2010.

I. Keller, A. Taverna, and O. Seehausen, Evidence of neutral and adaptive genetic divergence between European trout populations sampled along altitudinal gradients, Mol Ecol, vol.20, issue.9, pp.1888-1904, 2011.

J. L. Kelley, A. E. Magurran, M. García, and C. , Captive breeding promotes aggression in an endangered Mexican fish, Biol Conserv, vol.133, pp.169-177, 2006.

W. H. Lowe and M. A. Mcpeek, Is dispersal neutral?, Trends Ecol Evol, vol.29, pp.444-450, 2014.

A. D. Marie, L. Bernatchez, and D. Garant, Loss of genetic integrity correlates with stocking intensity in brook charr (Salvelinus fontinalis): Impacts of stocking on Salvelinus fontinalis, Mol Ecol, vol.19, pp.2025-2037, 2010.

E. K. Mcclelland and K. A. Naish, What is the fitness outcome of crossing unrelated fish populations? A meta-analysis and an evaluation of future research directions, Conserv Genet, vol.8, pp.397-416, 2007.

P. Mcginnity, P. Prodohl, and A. Ferguson, Fitness reduction and potential extinction of wild populations of Atlantic salmon, Salmo salar, as a result of interactions with escaped farm salmon, Proc R Soc B, vol.270, pp.2443-2450, 2003.

R. J. Miller and D. F. Frey, The establishment of dominance relationships in the blue gourami, Trichogaster trichopterus (Pallas), Behaviour, vol.42, pp.8-60, 1972.

M. B. Morrissey and D. T. De-kerckhove, The maintenance of genetic variation due to asymmetric gene flow in dendritic metapopulations, Am Nat, vol.174, pp.875-889, 2009.

I. C. Olsson, L. A. Greenberg, E. Bergman, and K. Wysujack, Environmentally induced migration: the importance of food, Ecol Lett, vol.9, pp.645-651, 2006.

M. Ovidio, M. Larinier, V. Burgun, M. Chanseau, W. Sremski et al., The ICE protocol for ecological continuity: a new tool to evaluate the upstream fish passage success at physical barriers. Fish Passage, International conference on river connectivity best practices and innovations, 2015.

D. Paetkau, W. Calvert, I. Stirling, and C. Strobeck, Microsatellite analysis of population structure in Canadian polar bears, Mol Ecol, vol.4, pp.347-354, 1995.

I. Paz-vinas, G. Loot, V. M. Stevens, and S. Blanchet, Evolutionary processes driving spatial patterns of intraspecific genetic diversity in river ecosystems, Mol Ecol, vol.24, pp.4586-4604, 2015.
URL : https://hal.archives-ouvertes.fr/hal-01445151

C. Perrier, R. Guyomard, and J. Bagliniere, Changes in the genetic structure of Atlantic salmon populations over four decades reveal substantial impacts of stocking and potential resiliency, Ecol Evol, vol.3, pp.2334-2349, 2013.
URL : https://hal.archives-ouvertes.fr/hal-01001102

S. Piry, A. Alapetite, and J. Cornuet, GENECLASS2: a software for genetic assignment and first-generation migrant detection, J Heredity, vol.95, pp.536-539, 2004.

J. K. Pritchard, M. Stephens, and P. Donnelly, Inference of population structure using multilocus genotype data, Genetics, vol.155, pp.945-959, 2000.

J. G. Prunier, M. Colyn, and X. Legendre, Multicollinearity in spatial genetics: separating the wheat from the chaff using commonality analyses, Mol Ecol, vol.24, pp.263-283, 2015.
URL : https://hal.archives-ouvertes.fr/hal-01123861

J. G. Prunier, V. Dubut, and G. Loot, The relative contribution of river network structure and anthropogenic stressors to spatial patterns of genetic diversity in two freshwater fishes: a multiplestressors approach, Freshw Biol, vol.63, pp.6-21, 2018.
URL : https://hal.archives-ouvertes.fr/hal-01764118

A. E. Pusey, Sex-biased dispersal and inbreeding avoidance in birds and mammals, Trends Ecol Evol, vol.2, pp.295-299, 1987.

E. Quéméré, C. Perrier, and A. Besnard, An improved PCRbased method for faster sex determination in brown trout (Salmo trutta) and Atlantic salmon (Salmo salar), Conserv Genet Resour, vol.6, pp.825-827, 2014.

J. Radinger and C. Wolter, Patterns and predictors of fish dispersal in rivers, Fish Fish, vol.15, pp.456-473, 2014.

E. Randi, Detecting hybridization between wild species and their domesticated relatives, Mol Ecol, vol.17, pp.285-293, 2008.

B. Rannala and J. L. Mountain, Detecting immigration by using multilocus genotypes, Proc Natl Acad Sci, vol.94, pp.9197-9201, 1997.
DOI : 10.1073/pnas.94.17.9197

URL : http://www.pnas.org/content/94/17/9197.full.pdf

J. B. Rasmussen, M. D. Robinson, A. Hontela, and D. D. Heath, Metabolic traits of westslope cutthroat trout, introduced rainbow trout and their hybrids in an ecotonal hybrid zone along an elevation gradient: metabolic traits of trout hybrids, Biol J Linn Soc, vol.105, pp.56-72, 2012.

S. Robert, J. Dancosse, and A. Dallaire, Some observations on the role of environment and genetics in behaviour of wild and domestic forms of Sus scrofa, 1987.

, Appl Anim Behav Sci, vol.17, pp.253-262

O. Ronce, How does it feel to be like a rolling stone? Ten questions about dispersal evolution, Annu Rev Ecol Evol Syst, vol.38, pp.231-253, 2007.
URL : https://hal.archives-ouvertes.fr/halsde-00299463

N. A. Rosenberg, DISTRUCT: a program for the graphical display of population structure: program note, Mol Ecol Notes, vol.4, pp.137-138, 2003.

F. Rousset, 007: a complete re-implementation of the genepop software for Windows and Linux, Mol Ecol Resour, vol.8, pp.103-106, 2008.
URL : https://hal.archives-ouvertes.fr/halsde-00366752

A. Rustadbakken, J. H. L'abee-lund, J. V. Arnekleiv, and M. Kraabol, Reproductive migration of brown trout in a small Norwegian river studied by telemetry, J Fish Biol, vol.64, pp.2-15, 2004.

P. J. Seddon, D. P. Armstrong, and R. F. Maloney, Developing the science of reintroduction biology, Conserv Biol, vol.21, pp.303-312, 2007.

G. T. Skalski and J. F. Gilliam, Modeling diffusive spread in a heterogeneous population: a movement study with stream fish, Ecology, vol.81, pp.1685-1700, 2000.

P. E. Smouse, J. C. Long, and R. R. Sokal, Multiple regression and correlation extensions of the mantel test of matrix correspondence, Syst Zool, vol.35, p.627, 1986.

P. Söderquist, G. Gunnarsson, and J. Elmberg, Longevity and migration distance differ between wild and hand-reared mallards Anas platyrhynchos in Northern Europe, Eur J Wildl Res, vol.59, pp.159-166, 2013.

T. S. Stoinski, T. L. Maple, B. B. Beck, and M. A. Bloomsmith, A behavioral comparison of captive-born, reintroduced golden lion tamarins and their wild-born offspring, Behaviour, vol.140, pp.137-160, 2003.
DOI : 10.1002/ajp.20002

P. Symons, Greater dispersal of wild compared with hatcheryreared juvenile atlantic salmon released in streams, J Fish Res Board Can, vol.26, pp.1867-1876, 1969.

W. E. Tymchuk and R. H. Devlin, Growth differences among first and second generation hybrids of domesticated and wild rainbow trout (I), Aquaculture, vol.245, pp.295-300, 2005.

J. Vähä and C. R. Primmer, Efficiency of model-based Bayesian methods for detecting hybrid individuals under different hybridization scenarios and with different numbers of loci: genetic detection of hybrids, Mol Ecol, vol.15, pp.63-72, 2005.

E. Valiquette, C. Perrier, I. Thibault, and L. Bernatchez, Loss of genetic integrity in wild lake trout populations following stocking: insights from an exhaustive study of 72 lakes from Québec, Canada. Evol Appl, vol.7, pp.625-644, 2014.

C. Van-oosterhout, W. F. Hutchinson, D. Wills, and P. Shipley, micro-checker: software for identifying and correcting genotyping errors in microsatellite data, Mol Ecol Notes, vol.4, pp.535-538, 2004.

L. A. Vøllestad, D. Serbezov, and A. Bass, Small-scale dispersal and population structure in stream-living brown trout (Salmo trutta) inferred by mark-recapture, pedigree reconstruction, and population genetics, Can J Fish Aquat Sci, vol.69, pp.1513-1524, 2012.

J. Wollebaek, K. H. Røed, Å. Brabrand, and J. Heggenes, Interbreeding of genetically distinct native brown trout (Salmo trutta) populations designates offspring fitness, Aquaculture, vol.356, pp.158-168, 2012.