C. Vogel and E. M. Marcotte, Insights into the regulation of protein abundance from proteomic and transcriptomic analyses, Nat Rev Genet, vol.13, issue.4, pp.227-259, 2013.

M. Duval, A. Simonetti, I. Caldelari, and S. Marzi, Multiple ways to regulate translation initiation in bacteria: Mechanisms, regulatory circuits, dynamics, Biochimie, vol.114, p.25792421, 2015.

C. Lange, A. Zaigler, M. Hammelmann, J. Twellmeyer, G. Raddatz et al., Genome-wide analysis of growth phase-dependent translational and transcriptional regulation in halophilic archaea, BMC Genomics, vol.8, pp.1-17, 2007.

G. Y. Fisunov, D. V. Evsyutina, I. A. Garanina, A. A. Arzamasov, I. O. Butenko et al., Ribosome profiling reveals an adaptation strategy of reduced bacterium to acute stress, Biochimie, vol.132, p.27984202, 2017.

H. Chassé, S. Boulben, V. Costache, P. Cormier, and J. Morales, Analysis of translation using polysome profiling, Nucleic Acids Res, vol.45, issue.3, p.28180329, 2017.

Y. Arava, Y. Wang, J. D. Storey, C. L. Liu, P. O. Brown et al., Genome-wide analysis of mRNA translation profiles in Saccharomyces cerevisiae, Proc Natl Acad Sci U S A, vol.100, issue.7, p.12660367, 2003.

F. Picard, H. Milhem, P. Loubière, B. Laurent, M. Cocaign-bousquet et al., Bacterial translational regulations: high diversity between all mRNAs and major role in gene expression, BMC Genomics, vol.13, issue.1, p.528, 2012.
URL : https://hal.archives-ouvertes.fr/hal-01268281

F. Picard, P. Loubière, L. Girbal, and M. Cocaign-bousquet, The significance of translation regulation in the stress response, BMC Genomics, vol.14, issue.1, p.588, 2013.
URL : https://hal.archives-ouvertes.fr/hal-01268301

S. Yamasaki, H. Matsuura, T. Demura, and K. Kato, Changes in Polysome Association of mRNA Throughout Growth and Development in Arabidopsis thaliana, Plant Cell Physiol, vol.56, issue.11, p.133, 2015.

H. Chassé, A. J. Boulben, S. , L. Corguillé, G. Corre et al., Translatome analysis at the egg-to-embryo transition in sea urchin, Nucleic Acids Res, vol.46, issue.9, p.29660001, 2018.

S. Pytharopoulou, K. Grintzalis, E. Sazakli, M. Leotsinidis, C. D. Georgiou et al., Translational responses and oxidative stress of mussels experimentally exposed to Hg, Cu and Cd: One pattern does not fit at all, Aquat Toxicol, vol.105, issue.1-2, p.21718659, 2011.

D. Melamed, L. Pnueli, and Y. Arava, Yeast translational response to high salinity: global analysis reveals regulation at multiple levels. RNA, vol.14, p.18495938, 2008.

H. Matsuura, Y. Ishibashi, A. Shinmyo, S. Kanaya, and K. Kato, Genome-Wide Analyses of Early Translational Responses to Elevated Temperature and High Salinity in Arabidopsis thaliana, Plant Cell Physiol, vol.51, issue.3, pp.448-62, 2010.

Y. Wu, J. Taggart, P. X. Song, C. Macdiarmid, and D. J. Eide, An MSC2 Promoter-lacZ Fusion Gene Reveals Zinc-Responsive Changes in Sites of Transcription Initiation That Occur across the Yeast Genome, PLoS One, vol.11, issue.9, p.27657924, 2016.

J. B. Smirnova, J. N. Selley, F. Sanchez-cabo, C. K. Eddy, A. A. Mccarthy et al., Global gene expression profiling reveals widespread yet distinctive translational responses to different eukaryotic translation initiation factor 2B-targeting stress pathways, Mol Cell Biol, vol.25, issue.21, p.16227585, 2005.

L. R. Alves, C. Oliveira, and S. Goldenberg, Eukaryotic translation elongation factor-1 alpha is associated with a specific subset of mRNAs in Trypanosoma cruzi, BMC Microbiol, vol.15, p.104, 2015.

B. Liu and C. Chen, Translation Elongation Factor 4 (LepA) Contributes to Tetracycline Susceptibility by Stalling Elongating Ribosomes, Antimicrob Agents Chemother, vol.62, issue.8, p.29784847, 2018.

F. A. Saglioccos, M. R. Vega-lasoj, D. Zhull, M. F. Tuitell, J. Mccarthyj et al., The Influence of 5'-Secondary Structures upon Ribosome Binding to mRNA during Translation in Yeast, J Biol Chem, vol.268, issue.35, 1993.

V. Presnyak, N. Alhusaini, Y. H. Chen, S. Martin, N. Morris et al., Codon optimality is a major determinant of mRNA stability, Cell, vol.160, issue.6, p.25768907, 2015.

H. Matsuura, S. Takenami, Y. Kubo, K. Ueda, A. Ueda et al., A Computational and Experimental Approach Reveals that the 5 0 -Proximal Region of the 5 0 -UTR has a Cis-Regulatory Signature Responsible for Heat Stress-Regulated mRNA Translation in Arabidopsis, Plant Cell Physiol, vol.54, issue.4, p.23314753, 2013.

H. A. King and A. P. Gerber, Translatome profiling: Methods for genome-scale analysis of mRNA translation, Brief Funct Genomics, vol.15, issue.1, p.25380596, 2016.

Y. Ah-seng, J. Rech, D. Lane, and J. Bouet, Defining the Role of ATP Hydrolysis in Mitotic Segregation of Bacterial Plasmids, PLoS Genet, vol.9, issue.12, p.24367270, 2013.
URL : https://hal.archives-ouvertes.fr/hal-00944950

T. Esquerré, S. Laguerre, C. Turlan, A. J. Carpousis, L. Girbal et al., Dual role of transcription and transcript stability in the regulation of gene expression in Escherichia coli cells cultured on glucose at different growth rates, Nucleic Acids Res, vol.42, issue.4, p.24243845, 2014.

S. Nouaille, S. Mondeil, A. L. Finoux, C. Moulis, L. Girbal et al., The stability of an mRNA is influenced by its concentration: a potential physical mechanism to regulate gene expression, Nucleic Acids Res, vol.45, issue.20, p.28977619, 2017.
URL : https://hal.archives-ouvertes.fr/hal-01882991

E. Redon, P. Loubière, and M. Cocaign-bousquet, Role of mRNA stability during genome-wide adaptation of Lactococcus lactis to carbon starvation, J Biol Chem, vol.280, issue.43, p.16131490, 2005.

M. Maligoy, M. Mercade, M. Cocaign-bousquet, and P. Loubiere, Transcriptome analysis of Lactococcus lactis in coculture with Saccharomyces cerevisiae, Appl Environ Microbiol, vol.74, issue.2, p.17993564, 2008.

M. W. Pfaffl, A new mathematical model for relative quantification in real-time RT-PCR, Nucleic Acids Res, vol.29, issue.9, p.11328886, 2001.

M. Morin, D. Ropers, E. Cinquemani, J. C. Portais, B. Enjalbert et al., The Csr system regulates Escherichia coli fitness by controlling glycogen accumulation and energy levels, MBio, vol.8, issue.5, p.29089432, 2017.
URL : https://hal.archives-ouvertes.fr/hal-01672038

L. Zhang, W. Jiang, J. Nan, J. Almqvist, and Y. Huang, The Escherichia coli CysZ is a pH dependent sulfate transporter that can be inhibited by sulfite, Biochim Biophys Acta, vol.1838, p.24657232, 2014.

F. Jacob and J. Monod, Genetic regulatory mechanisms in the synthesis of proteins, J Mol Biol, vol.3, issue.3, pp.318-56, 1961.

C. H. Yu, Y. Dang, Z. Zhou, C. Wu, F. Zhao et al., Codon Usage Influences the Local Rate of Translation Elongation to Regulate Co-translational Protein Folding, Mol Cell, vol.59, issue.5, p.26321254, 2015.

G. W. Li, E. Oh, and J. S. Weissman, The anti-Shine-Dalgarno sequence drives translational pausing and codon choice in bacteria, Nature, vol.484, issue.7395, p.22456704, 2012.

S. A. Evfratov, I. A. Osterman, E. S. Komarova, A. M. Pogorelskaya, M. P. Rubtsova et al., Application of sorting and next generation sequencing to study 5 0 -UTR influence on translation efficiency in

E. Coli, Nucleic Acids Res, vol.45, issue.6, p.27899632, 2017.

A. M. Giuliodori, D. Pietro, F. Marzi, S. Masquida, B. Wagner et al., The cspA mRNA is a thermosensor that modulates translation of the cold-shock protein CspA, Mol Cell, vol.37, issue.1, p.20129052, 2010.
URL : https://hal.archives-ouvertes.fr/hal-00475727

S. Gottesman and G. Storz, Bacterial small RNA regulators: versatile roles and rapidly evolving variations, Cold Spring Harb Perspect Biol, vol.3, issue.12, p.20980440, 2011.

A. H. Potts, C. A. Vakulskas, A. Pannuri, H. Yakhnin, P. Babitzke et al., Global role of the bacterial posttranscriptional regulator CsrA revealed by integrated transcriptomics, Nat Commun, vol.8, issue.1, p.29150605, 2017.

C. G. Artieri and H. B. Fraser, Evolution at two levels of gene expression in yeast, Genome Res, vol.24, issue.3, p.24318729, 2014.

Z. Wang, X. Sun, Y. Zhao, X. Guo, H. Jiang et al., Evolution of gene regulation during transcription and translation, Genome Biol Evol, vol.7, issue.4, p.25877616, 2015.