Stochasticity of metabolism and growth at the single-cell level, Nature, vol.514, pp.376-379, 2014. ,
Cell-size control and homeostasis in bacteria, Curr. Biol, vol.25, pp.385-391, 2015. ,
Individuality and universality in the growth-division laws of single E. coli cells, Phys. Rev. E, vol.93, p.12408, 2016. ,
URL : https://hal.archives-ouvertes.fr/hal-01528503
The synchronization of replication and division cycles in individual E. coli cells, Cell, vol.166, pp.729-739, 2016. ,
, Mycobacteria Modify Their Cell Size Control under Sub-Optimal Carbon Sources. Front. Cell Dev. Biol, vol.5, p.64, 2017.
Noisy cell growth rate leads to fluctuating protein concentration in bacteria, Phys. Biol, vol.6, p.36015, 2009. ,
Noise propagation in gene networks, Science, vol.307, pp.1965-1969, 2005. ,
The critical size is set at a single-cell level by growth rate to attain homeostasis and adaptation, Nat. Commun, vol.3, p.1012, 2012. ,
Interdependence of cell growth and gene expression: origins and consequences, Science, vol.330, pp.1099-1102, 2010. ,
Dependency on medium and temperature of cell size and chemical composition during balanced growth of Salmonella typhimurium, Microbiology, vol.19, pp.592-606, 1958. ,
Growth rate-dependent global effects on gene expression in bacteria, Cell, vol.139, pp.1366-1375, 2009. ,
Stochastic gene expression in a single cell, Science, vol.297, pp.1183-1186, 2002. ,
Connecting growth with gene expression: of noise and numbers, Curr. Opin. Microbiol, vol.25, pp.127-135, 2015. ,
Noise propagation in synthetic gene circuits for metabolic control, ACS Synth. Biol, vol.4, pp.116-125, 2014. ,
Noise in transcription negative feedback loops: simulation and experimental analysis, Mol. Syst. Biol, vol.2, p.41, 2006. ,
Shifts in growth strategies reflect tradeoffs in cellular economics, Mol. Syst. Biol, vol.5, p.323, 2009. ,
Nonoptimal microbial response to antibiotics underlies suppressive drug interactions, Cell, vol.139, pp.707-718, 2009. ,
The biomass objective function, Curr. Opin. Microbiol, vol.13, pp.344-349, 2010. ,
Multi-omics integration accurately predicts cellular state in unexplored conditions for Escherichia coli, Nat. Commun, vol.7, p.13090, 2016. ,
Heterogeneity in protein expression induces metabolic variability in a modeled Escherichia coli population, Proc. Natl Acad. Sci. USA, vol.110, pp.14006-14011, 2013. ,
Constrained allocation flux balance analysis, PLoS Comput. Biol, vol.12, p.1004913, 2016. ,
Noise in protein expression scales with natural protein abundance, Nat. Genet, vol.38, pp.636-643, 2006. ,
Mechanistic links between cellular trade-offs, gene expression, and growth, Proc. Natl Acad. Sci. USA, vol.112, pp.1038-1047, 2015. ,
Chromosome replication and the division cycle of Escherichia coli Br, J. Mol. Biol, vol.31, pp.519-540, 1968. ,
Relationship between cell size and time of initiation of DNA replication, Nature, vol.219, pp.1077-1079, 1968. ,
Self-consistent examination of Donachie's constant initiation size at the single-cell level, Front. Microbiol, vol.6, p.1349, 2015. ,
Gene regulation at the single-cell level, Science, vol.307, pp.1962-1965, 2005. ,
Separating intrinsic from extrinsic fluctuations in dynamic biological systems, Proc. Natl Acad. Sci. USA, vol.108, pp.12167-12172, 2011. ,
, Desk Encyclopedia of Microbiology, pp.788-804, 2009.
Non-genetic heterogeneity from stochastic partitioning at cell division, Nat. Genet, vol.43, pp.95-100, 2011. ,
Size variations and correlation of different cell cycle events in slow-growing Escherichia coli, J. Bacteriol, vol.134, pp.423-433, 1978. ,
The chemical Langevin equation, J. Chem. Phys, vol.113, pp.297-306, 2000. ,
, , 2009.
How reliable is the linear noise approximation of gene regulatory networks?, BMC Genomics, vol.14, issue.S5, 2013. ,
Inference for stochastic chemical kinetics using moment equations and system size expansion, PLoS Comput. Biol, vol.12, p.1005030, 2016. ,
Invariance of initiation mass and predictability of cell size in Escherichia coli, Curr. Biol, vol.27, pp.1278-1287, 2017. ,
What is the total number of protein molecules per cell volume? A call to rethink some published values, Bioessays, vol.35, pp.1050-1055, 2013. ,
Modulation of chemical composition and other parameters of the cell at different exponential growth rates, EcoSal Plus, vol.3, 2008. ,
Inflating bacterial cells by increased protein synthesis, Mol. Syst. Biol, vol.11, p.836, 2015. ,
DOI : 10.15252/msb.20156178
URL : http://msb.embopress.org/content/11/10/836.full.pdf
Threshold effect of growth rate on population variability of, Escherichia coli cell lengths. R. Soc. Open Sci, vol.4, p.160417, 2017. ,
Decomposing noise in biochemical signaling systems highlights the role of protein degradation, Biophys. J, vol.104, pp.1783-1793, 2013. ,
Cofactor engineering for enhancing the flux of metabolic pathways, Front. Bioeng. Biotechnol, vol.2, p.30, 2014. ,
Global analysis of mRNA decay and abundance in Escherichia coli at singlegene resolution using two-color fluorescent DNA microarrays, Proc. Natl Acad. Sci. USA, vol.99, pp.9697-9702, 2002. ,
Quantifying E. coli proteome and transcriptome with single-molecule sensitivity in single cells, Science, vol.329, pp.533-538, 2010. ,
Functional organisation of Escherichia coli transcriptional regulatory network, J. Mol. Biol, vol.381, pp.238-247, 2008. ,
Global transcriptional regulatory network for Escherichia coli robustly connects gene expression to transcription factor activities, Proc. Natl Acad. Sci. USA, vol.114, pp.10286-10291, 2017. ,
Diversity in ATP concentrations in a single bacterial cell population revealed by quantitative single-cell imaging, Sci. Rep, vol.4, p.6522, 2014. ,
Determination of minimum inhibitory concentrations, J. Antimicrob. Chemother, vol.48, pp.5-16, 2001. ,
Microbial phenotypic heterogeneity and antibiotic tolerance, Curr. Opin. Microbiol, vol.10, pp.30-38, 2007. ,
Bacterial persistence as a phenotypic switch, Science, vol.305, pp.1622-1625, 2004. ,
Contribution of phenotypic heterogeneity to adaptive antibiotic resistance, Proc. Natl Acad. Sci. USA, vol.111, pp.355-360, 2014. ,
Analysis of fluorescent reporters indicates heterogeneity in glucose uptake and utilization in clonal bacterial populations, BMC. Microbiol, vol.13, p.1, 2013. ,
Regulatory activity revealed by dynamic correlations in gene expression noise, Nat. Genet, vol.40, p.1493, 2008. ,
Noise propagation in an integrated model of bacterial gene expression and growth, PLoS Comput. Biol, vol.14, p.1006386, 2018. ,
Detecting causality in complex ecosystems, Science, vol.338, pp.496-500, 2012. ,
Mitochondrial variability as a source of extrinsic cellular noise, PLoS Comput. Biol, vol.8, p.1002416, 2012. ,
Single-cell histories in growing populations: relating physiological variability to population growth, 2017. ,
Phenotypic diversity, population growth, and information in fluctuating environments, Science, vol.309, pp.2075-2078, 2005. ,
Microbial individuality: how single-cell heterogeneity enables population level strategies, Curr. Opin. Microbiol, vol.24, pp.104-112, 2015. ,
Slow-growing cells within isogenic populations have increased RNA polymerase error rates and DNA damage, Nat. Commun, vol.6, p.7972, 2015. ,
Molecular circuits for dynamic noise filtering, Proc. Natl Acad. Sci. USA, vol.113, pp.4729-4734, 2016. ,
Relative rates of surface and volume synthesis set bacterial cell size, Cell, vol.165, pp.1479-1492, 2016. ,
Quantitative proteomic analysis reveals a simple strategy of global resource allocation in bacteria, Mol. Syst. Biol, vol.11, p.784, 2015. ,
How partially inhibitory concentrations of chloramphenicol affect the growth of Escherichia coli, Antimicrob. Agents Chemother, vol.18, pp.323-337, 1980. ,
Some environmental factors affecting the length of Escherichia coli organisms in continuous cultures, Microbiology, vol.25, pp.17-27, 1961. ,
Jump-diffusion approximation of stochastic reaction dynamics: error bounds and algorithms, Multiscale Model Simul, vol.13, pp.1390-1419, 2015. ,
Stochastic simulation of biomolecular networks in dynamic environments, PLoS Comput. Biol, vol.12, p.1004923, 2016. ,
Small noise approximation of cell growth fluctuations, vol.7121765, 2018. ,