M. Abrams, How do natural selection and random drift interact?, Philosophy of Science, vol.74, pp.666-679, 2007.

P. B. Adler, J. Hillerislambers, and J. M. Levine, A niche for neutrality, Ecology Letters, vol.10, pp.95-104, 2007.

O. Allouche and R. Kadmon, A general framework for neutral models of community dynamics, Ecology Letters, vol.12, pp.1287-1297, 2009.

M. B. Araújo and A. Rozenfeld, The geographic scaling of biotic interactions, Ecography, vol.37, pp.406-415, 2014.

G. Bell, Neutral macroecology, Science, vol.293, pp.2413-2418, 2001.

R. N. Brandon and G. Ramsey, What's wrong with the emergentist statistical interpretation of natural selection and random drift? Pages 66-84 in The cambridge companion to the Philosophy of Biology, 2007.

K. P. Burnham and D. R. Anderson, Model Selection and Multimodel Inference: A Practical Information-Theoretic Approach, 2002.

J. M. Chase, Towards a really unified theory for metacommunities, Functional Ecology, vol.19, pp.182-186, 2005.

J. M. Chase, Spatial scale resolves the niche versus neutral theory debate, Journal of Vegetation Science, vol.25, pp.319-322, 2014.

J. Chave, Neutral theory and community ecology, Ecology Letters, vol.7, pp.241-253, 2004.

J. Chave and E. G. Leigh, A spatially explicit neutral model of ?-diversity in tropical forests, Theoretical Population Biology, vol.62, pp.153-168, 2002.

J. Chave, H. C. Muller-landau, and S. A. Levin, Comparing classical community models: theoretical consequences for patterns of diversity, American Naturalist, vol.159, pp.1-23, 2002.

J. Chave, D. Alonso, and R. S. Etienne, Comparing models of species abundance, Nature, vol.441, p.1, 2006.

P. Chesson, Mechanisms of maintenance of species diversity, Annual Review of Ecology and Systematics, vol.31, pp.343-366, 2000.

P. Chesson and N. Huntly, The roles of harsh and fluctuating conditions in the dynamics of ecological communities, American Naturalist, vol.150, pp.519-553, 1997.

P. L. Chesson and R. R. Warner, Environmental variability promotes coexistence in lottery competitive systems, American Naturalist, vol.117, pp.923-943, 1981.

R. A. Chisholm and S. W. Pacala, Niche and neutral models predict asymptotically equivalent species abundance distributions in high-diversity ecological communities, Proceedings of the National Academy of Sciences of the United States of America, vol.107, pp.15821-15825, 2010.

L. S. Comita, H. C. Muller-landau, S. Aguilar, and S. P. Hubbell, Asymmetric density dependence shapes species abundances in a tropical tree community, Science, vol.329, pp.330-332, 2010.

W. K. Cornwell and D. D. Ackerly, Community assembly and shifts in plant trait distributions across an environmental gradient in coastal California, Ecological Monographs, vol.79, pp.109-126, 2009.

M. R. Dietrich and R. L. Millstein, The role of causal processes in the neutral and nearly neutral theories, Philosophy of Science, vol.75, pp.548-559, 2008.

C. P. Doncaster, Ecological equivalence: a realistic assumption for niche theory as a testable alternative to neutral theory, PLOS ONE, vol.4, p.7460, 2009.

P. Dowe, Causal process theories. Pages 213-233 in The Oxford Handbook of causation, 2009.

B. Ellis, Causal powers and laws of nature. Pages 19-34 in causation and Laws of Nature, 1999.

W. J. Ewens, The sampling theory of selectively neutral alleles, Theoretical Population Biology, vol.3, pp.87-112, 1972.

R. A. Fisher, A. S. Corbet, and C. B. Williams, The relation between the number of species and the number of individuals in a random sample from an animal population, Journal of Animal Ecology, vol.12, pp.42-58, 1943.

M. Friedman, Explanation and scientific understanding, Journal of Philosophy, vol.71, pp.5-19, 1974.

C. X. Garzon-lopez, P. A. Jansen, S. A. Bohlman, A. Ordonez, and H. Olff, Effects of sampling scale on patterns of habitat association in tropical trees, Journal of Vegetation Science, vol.25, pp.349-362, 2014.

V. Gewin, Beyond neutrality-ecology finds its niche, PLOS Biology, vol.4, p.278, 2006.

L. D. Gigord, M. R. Macnair, and A. Smithson, Negative frequency-dependent selection maintains a dramatic flower color polymorphism in the rewardless orchid dactylorhiza sambucina (L.) Soò, Proceedings of the National Academy of Sciences of the United States of America, vol.98, pp.6253-6255, 2001.

N. J. Gotelli and G. L. Entsminger, Swap and fill algorithms in null model analysis: rethinking the knight's tour, Oecologia, vol.129, pp.281-291, 2001.

N. J. Gotelli and G. L. Entsminger, Swap algorithms in null model analysis, Ecology, vol.84, pp.532-535, 2003.

N. J. Gotelli and G. R. Graves, Null Models in Ecology, 1996.

N. J. Gotelli and B. J. Mcgill, Null versus neutral models: what's the difference?, Ecography, vol.29, pp.793-800, 2006.

N. J. Gotelli and W. Ulrich, Statistical challenges in null model analysis, Oikos, vol.121, pp.171-180, 2012.

D. Gravel, C. D. Canham, M. Beaudet, and C. Messier, Reconciling niche and neutrality: the continuum hypothesis, Ecology Letters, vol.9, pp.399-409, 2006.

J. P. Grime, Benefits of plant diversity to ecosystems: immediate, filter and founder effects, Journal of Ecology, vol.86, pp.902-910, 1998.

N. Hall, Two concepts of causation. Pages 225276 in causation and counterfactuals, 2004.

M. J. Hatcher, J. T. Dick, and A. M. Dunn, How parasites affect interactions between competitors and predators, Ecology Letters, vol.9, pp.1253-1271, 2006.

R. D. Holt, Emergent neutrality, Trends in Ecology and Evolution, vol.21, pp.531-533, 2006.

M. Holyoak and M. Loreau, Reconciling empirical ecology with neutral community models, Ecology, vol.87, pp.1370-1377, 2006.

M. Holyoak, M. Loreau, and D. Strong, Neutral community ecology, Ecology, vol.87, pp.1368-1369, 2006.

S. P. Hubbell, Tree dispersion, abundance, and diversity in a tropical dry forest, Science, vol.203, pp.1299-1309, 1979.

S. P. Hubbell, A unified theory of biogeography and relative species abundance and its application to tropical rain forests and coral reefs, coral Reefs, vol.16, pp.9-21, 1997.

S. P. Hubbell, The Unified Neutral Theory of Biodiversity and Biogeography, 2001.

S. P. Hubbell, Neutral theory in community ecology and the hypothesis of functional equivalence, Functional Ecology, vol.19, pp.166-172, 2005.

S. P. Hubbell, Neutral theory and the evolution of ecological equivalence, Ecology, vol.87, pp.1387-1398, 2006.

G. C. Hurtt and S. W. Pacala, The consequences of recruitment limitation: reconciling chance, history and competitive differences between plants, Journal of Theoretical Biology, vol.176, pp.1-12, 1995.

D. J. Johnson, W. T. Beaulieu, J. D. Bever, and K. Clay, Conspecific negative density dependence and forest diversity, Science, vol.336, pp.904-907, 2012.

M. Kimura, The Neutral Theory of Molecular Evolution, 1983.

P. Kitcher, Explanation, conjunction, and unification, Journal of Philosophy, vol.73, pp.207-212, 1976.

R. Lande, S. Engen, and B. Saether, Stochastic Population dynamics in Ecology and conservation, 2003.

A. M. Latimer, J. A. Silander, and R. M. Cowling, Neutral ecological theory reveals isolation and rapid speciation in a biodiversity hot spot, Science, vol.309, pp.1722-1725, 2005.

M. Lavin, B. P. Schrire, G. Lewis, R. T. Pennington, A. Delgado-salinas et al., Metacommunity process rather than continental tectonic history better explains geographically structured phylogenies in legumes, Philosophical Transactions of the Royal Society B: Biological Sciences, vol.359, pp.1509-1522, 2004.

M. A. Leibold, Return of the niche, Nature, vol.454, pp.39-40, 2008.

M. A. Leibold and M. A. Mcpeek, Coexistence of the niche and neutral perspectives in community ecology, Ecology, vol.87, pp.1399-1410, 2006.

E. G. Leigh, Neutral theory: a historical perspective, Journal of Evolutionary Biology, vol.20, pp.2075-2091, 2007.

J. Lessard, J. Belmaker, J. A. Myers, J. M. Chase, and C. Rahbek, Inferring local ecological processes amid species pool influences, Trends in Ecology and Evolution, vol.27, pp.600-607, 2012.

J. M. Levine and J. Hillerislambers, The importance of niches for the maintenance of species diversity, Nature, vol.461, pp.254-257, 2009.

R. Levins, The strategy of model building in population biology, American Scientist, vol.54, pp.421-431, 1966.

D. Lewis, Causation. Journal of Philosophy, vol.70, pp.556-567, 1973.

C. J. Lortie, R. W. Brooker, P. Choler, Z. Kikvidze, R. Michalet et al., Rethinking plant community theory, Oikos, vol.107, pp.433-438, 2004.
URL : https://hal.archives-ouvertes.fr/halsde-00276315

S. M. Louda, K. H. Keeler, and R. D. Holt, Herbivore influences on plant performance and competitive interactions. Pages 413-444 in Perspectives on Plant competition, 1990.

R. Macarthur and R. Levins, The limiting similarity, convergence, and divergence of coexisting species, American Naturalist, vol.101, pp.377-385, 1967.

B. Mcgill, Strong and weak tests of macroecological theory, Oikos, vol.102, pp.679-685, 2003.

B. J. Mcgill and J. C. Nekola, Mechanisms in macroecology: AWOL or purloined letter? Towards a pragmatic view of mechanism, Oikos, vol.119, pp.591-603, 2010.

B. J. Mcgill, B. A. Maurer, and M. D. Weiser, Empirical evaluation of neutral theory, Ecology, vol.87, pp.1411-1423, 2006.

B. J. Mcgill, B. J. Enquist, E. Weiher, and M. Westoby, Rebuilding community ecology from functional traits, Trends in Ecology and Evolution, vol.21, pp.178-185, 2006.

P. Menzies, Causal models, token causation, and processes, Philosophy of Science, vol.71, pp.820-832, 2004.

G. M. Mikkelson, Niche-based vs. neutral models of ecological communities, Biology and Philosophy, vol.20, pp.557-566, 2005.

N. Mouquet and M. Loreau, Community patterns in source-sink metacommunities, American Naturalist, vol.162, pp.544-557, 2003.

N. Mouquet, V. Devictor, and C. N. Meynard, Ecophylogenetics: advances and perspectives, Biological Reviews, vol.87, pp.769-785, 2012.
URL : https://hal.archives-ouvertes.fr/hal-00780751

N. Mouquet, Y. Lagadeuc, and V. Devictor, Predictive ecology in a changing world, Journal of Applied Ecology, vol.52, pp.1293-1310, 2015.
URL : https://hal.archives-ouvertes.fr/hal-01180277

R. Muneepeerakul, E. Bertuzzo, H. J. Lynch, W. F. Fagan, A. Rinaldo et al., Neutral metacommunity models predict fish diversity patterns in Mississippi-Missouri basin, Nature, vol.453, pp.220-222, 2008.

F. Munoz, B. R. Ramesh, and P. Couteron, How do habitat filtering and niche conservatism affect community composition at different taxonomic resolutions?, Ecology, vol.95, pp.2179-2191, 2014.

A. E. Noble, N. M. Temme, W. F. Fagan, and T. H. Keitt, A sampling theory for asymmetric communities, Journal of Theoretical Biology, vol.273, pp.1-14, 2011.

T. Ohta, The nearly neutral theory of molecular evolution, Annual Review of Ecology and Systematics, vol.23, pp.263-286, 1992.

F. W. Preston, The commonness, and rarity, of species, Ecology, vol.29, pp.254-283, 1948.

S. Pueyo, Diversity: between neutrality and structure, Oikos, vol.112, pp.392-405, 2006.

D. W. Purves and S. W. Pacala, Ecological drift in niche-structured communities: neutral pattern does not imply neutral process, Pages 107-140 in Biotic Interactions in the Tropics: Their Role in the Maintenance of Species diversity, 2005.

D. W. Purves and L. A. Turnbull, Different but equal: the implausible assumption at the heart of neutral theory, Journal of Animal Ecology, vol.79, pp.1215-1225, 2010.

R. E. Ricklefs, Disintegration of the ecological community, American Naturalist, vol.172, pp.741-750, 2008.

J. Rosindell, S. J. Cornell, S. P. Hubbell, and R. S. Etienne, Protracted speciation revitalizes the neutral theory of biodiversity, Ecology Letters, vol.13, pp.716-727, 2010.

J. Rosindell, S. P. Hubbell, and R. S. Etienne, The unified neutral theory of biodiversity and biogeography at age ten, Trends in Ecology and Evolution, vol.26, pp.340-348, 2011.

W. C. Salmon, Scientific Explanation and the causal Structure of the World, 1984.

M. Scheffer and E. H. Van-nes, Self-organized similarity, the evolutionary emergence of groups of similar species, Proceedings of the National Academy of Sciences of the United States of America, vol.103, pp.6230-6235, 2006.

B. Shipley, D. Vile, and É. Garnier, From plant traits to plant communities: a statistical mechanistic approach to biodiversity, Science, vol.314, pp.812-814, 2006.
DOI : 10.1126/science.1131344

E. Sober, The principle of parsimony, British Journal for the Philosophy of Science, vol.32, pp.145-156, 1981.

E. Sober, The Nature of Selection: Evolutionary Theory in Philosophical Focus. Cambridge (Massachusetts), 1993.

M. Strevens, The causal and unification approaches to explanation unified-causally, Noûs, vol.38, pp.154-176, 2004.
DOI : 10.1111/j.1468-0068.2004.00466.x
URL : http://www.strevens.org/research/expln/Expln101 Nous.pdf

D. Tilman, Competition and biodiversity in spatially structured habitats, Ecology, vol.75, pp.2-16, 1994.
DOI : 10.2307/1939377

W. Ulrich and N. J. Gotelli, Pattern detection in null model analysis, Oikos, vol.122, pp.2-18, 2013.

M. Vellend, Conceptual synthesis in community ecology, Quarterly Review of Biology, vol.85, pp.183-206, 2010.

R. Vergnon, N. K. Dulvy, and R. P. Freckleton, Niches versus neutrality: uncovering the drivers of diversity in a species-rich community, Ecology Letters, vol.12, pp.1079-1090, 2009.

M. Veuille, Genetics and the evolutionary process, comptes Rendus de l'Académie des Sciences-Series III-Sciences de la Vie, vol.323, pp.1155-1165, 2000.

I. Volkov, J. R. Banavar, S. P. Hubbell, and A. Maritan, Neutral theory and relative species abundance in ecology, Nature, vol.424, pp.1035-1037, 2003.

S. C. Walker, When and why do non-neutral metacommunities appear neutral? Theoretical Population, Biology, vol.71, pp.318-331, 2007.

C. K. Waters, Causes that make a difference, Journal of Philosophy, vol.104, pp.551-579, 2007.

P. L. Wennekes, J. Rosindell, and R. S. Etienne, The neutral-niche debate: a philosophical perspective, Acta Biotheoretica, vol.60, pp.257-271, 2012.

J. Whitfield, Neutrality versus the niche, Nature, vol.417, pp.480-481, 2002.

J. B. Wilson, Guilds, functional types and ecological groups, Oikos, vol.86, pp.507-522, 1999.

J. Woodward, Pages 87-118 in The Philosophy of Scientific Experimentation, 2003.

S. Zhou and D. Zhang, A nearly neutral model of biodiversity, Ecology, vol.89, pp.248-258, 2008.