C. L. Afonso, G. K. Amarasinghe, K. Banyai, Y. Bao, and C. F. Basler, Taxonomy of the order Mononegavirales: update 2016, Archives of virology, vol.161, pp.2351-2360, 2016.
URL : https://hal.archives-ouvertes.fr/hal-01911212

B. Morin, A. A. Rahmeh, and S. P. Whelan, Mechanism of RNA synthesis initiation by the vesicular stomatitis virus polymerase, The EMBO journal, vol.31, pp.1320-1329, 2012.

B. Morin, B. Liang, E. Gardner, R. A. Ross, and S. Whelan, An in vitro RNA synthesis assay for rabies virus defines critical ribonucleoprotein interactions for polymerase activity, Journal of Virology, 2016.

R. A. Lamb and G. D. Parks, Fields Virology, pp.957-995, 2013.

S. G. Guryanov, L. Liljeroos, P. Kasaragod, T. Kajander, and S. J. Butcher, Crystal Structure of the Measles Virus Nucleoprotein Core in complex with an N-terminal Region of Phosphoprotein, Journal of virology, vol.90, pp.2849-2857, 2016.

M. Galloux, G. Gabiane, J. Sourimant, C. A. Richard, and P. England, Identification and Characterization of the Binding Site of the Respiratory Syncytial Virus Phosphoprotein to RNA-Free Nucleoprotein, Journal of virology, vol.89, pp.3484-3496, 2015.

F. Yabukarski, P. Lawrence, N. Tarbouriech, J. M. Bourhis, and E. Delaforge, Structure of Nipah virus unassembled nucleoprotein in complex with its viral chaperone, Nature structural & molecular biology, vol.21, pp.754-759, 2014.
URL : https://hal.archives-ouvertes.fr/hal-01101596

C. Leyrat, F. Yabukarski, N. Tarbouriech, E. A. Ribeiro, and M. R. Jensen, Structure of the vesicular stomatitis virus N(0)-P complex, PLoS Pathog, vol.7, p.1002248, 2011.

M. Renner, M. Bertinelli, C. Leyrat, G. C. Paesen, and L. F. Saraiva-de-oliveira, Nucleocapsid assembly in pneumoviruses is regulated by conformational switching of the N protein, vol.5, p.12627, 2016.

S. Milles, M. R. Jensen, G. Communie, D. Maurin, and G. Schoehn, Self-Assembly of Measles Virus Nucleocapsid-like Particles: Kinetics and RNA Sequence-Dependence, Angewandte Chemie, vol.55, pp.9356-9360, 2016.
URL : https://hal.archives-ouvertes.fr/hal-01341976

D. Blocquel, J. Bourhis, J. Eléouët, D. Gerlier, and J. Habchi, The original mechanics of Mononegavirales transcription and replication, Virologie, vol.16, pp.225-257, 2012.

B. K. Rima and W. P. Duprex, The measles virus replication cycle, Current topics in microbiology and immunology, vol.329, pp.77-102, 2009.

S. P. Whelan, J. N. Barr, and G. W. Wertz, Transcription and replication of nonsegmented negative-strand RNA viruses, Current topics in microbiology and immunology, vol.283, pp.61-119, 2004.

K. W. Ryan and A. Portner, Separate domains of Sendai virus P protein are required for binding to viral nucleocapsids, Virology, vol.174, pp.515-521, 1990.

C. J. Buchholz, D. Spehner, R. Drillien, W. J. Neubert, and H. E. Homann, The conserved N-terminal region of Sendai virus nucleocapsid protein NP is required for nucleocapsid assembly, Journal of virology, vol.67, pp.5803-5812, 1993.

T. Wiseman, S. Williston, J. F. Brandts, and L. N. Lin, Rapid measurement of binding constants and heats of binding using a new titration calorimeter, Analytical biochemistry, vol.179, pp.131-137, 1989.

B. R. Brooks, C. L. Brooks, L. Nilsson, and R. J. Petrella, CHARMM: the biomolecular simulation program, Journal of computational chemistry, vol.30, pp.1545-1614, 2009.

D. Reichmann, Y. Phillip, A. Carmi, and G. Schreiber, On the contribution of water-mediated interactions to protein-complex stability, Biochemistry, vol.47, pp.1051-1060, 2008.

C. Chipot and J. Henin, Exploring the free-energy landscape of a short peptide using an average force, The Journal of chemical physics, vol.123, p.244906, 2005.

L. M. Bloyet, J. Welsch, F. Enchery, C. Mathieu, and S. De-breyne, Requirement of HSP90 chaperoning in addition to phosphoprotein for folding but not for supporting enzymatic activities of measles and Nipah virus L polymerases, Journal of virology, vol.90, pp.6642-6656, 2016.

M. P. Hall, J. Unch, B. F. Binkowski, M. P. Valley, and B. L. Butler, Engineered luciferase reporter from a deep sea shrimp utilizing a novel imidazopyrazinone substrate, ACS chemical biology, vol.7, pp.1848-1857, 2012.

D. Kolakofsky, Paramyxovirus RNA synthesis, mRNA editing, and genome hexamer phase: A review, Virology, vol.498, pp.94-98, 2016.

S. Vidal, J. Curran, and D. Kolakofsky, Editing of the Sendai virus P/C mRNA by G insertion occurs during mRNA synthesis via a virus-encoded activity, Journal of Virology, vol.64, pp.239-246, 1990.

M. S. Sidhu, J. Chan, K. Kaelin, P. Spielhofer, and F. Radecke, Rescue of synthetic measles virus minireplicons: measles genomic termini direct efficient expression and propagation of a reporter gene, Virology, vol.208, pp.800-807, 1995.

K. K. Conzelmann, Reverse genetics of mononegavirales, Current topics in microbiology and immunology, vol.283, pp.1-41, 2004.

R. Cattaneo, G. Rebmann, A. Schmid, K. Baczko, and V. Ter-meulen, Altered transcription of a defective measles virus genome derived from a diseased human brain, EMBO Journal, vol.6, pp.681-688, 1987.

S. Plumet, W. P. Duprex, and D. Gerlier, Dynamics of viral RNA synthesis during measles virus infection, Journal of Virology, vol.79, pp.6900-6908, 2005.
URL : https://hal.archives-ouvertes.fr/hal-00123404

Y. Yoshikawa, K. Mizumoto, and K. Yamanouchi, Characterization of messenger RNAs of measles virus, The Journal of general virology, vol.67, pp.2807-2812, 1986.

T. Tokusumi, A. Iida, T. Hirata, A. Kato, and Y. Nagai, Recombinant Sendai viruses expressing different levels of a foreign reporter gene, Virus Research, vol.86, pp.33-38, 2002.

L. E. Iverson and J. K. Rose, Localized attenuation and discontinuous synthesis during vesicular stomatitis virus transcription, Cell, vol.23, pp.477-484, 1981.

D. Kolakofsky, L. Mercier, P. Iseni, F. Garcin, and D. , Viral RNA polymerase scanning and the gymnastics of Sendai virus RNA synthesis, Virology, vol.318, pp.463-473, 2004.

P. Plattet, L. Strahle, P. Le-mercier, S. Hausmann, and D. Garcin, Sendai virus RNA polymerase scanning for mRNA start sites at gene junctions, Virology, vol.362, pp.411-420, 2007.

S. Cordey and L. Roux, Transcribing paramyxovirus RNA polymerase engages the template at its 3' extremity, The Journal of general virology, vol.87, pp.665-672, 2006.

D. W. Buchan, F. Minneci, T. C. Nugent, K. Bryson, and D. T. Jones, Scalable web services for the PSIPRED Protein Analysis Workbench, Nucleic acids research, vol.41, pp.349-357, 2013.

H. Ogura, K. Baczko, B. K. Rima, and V. Ter-meulen, Selective inhibition of translation of the mRNA coding for measles virus membrane protein at elevated temperatures, Journal of Virology, vol.61, pp.472-479, 1987.

M. Iwasaki, M. Takeda, Y. Shirogane, Y. Nakatsu, and T. Nakamura, The matrix protein of measles virus regulates viral RNA synthesis and assembly by interacting with the nucleocapsid protein, Journal of virology, vol.83, pp.10374-10383, 2009.

T. Cathomen, B. Mrkic, D. Spehner, R. Drillien, and R. Naef, A matrix-less measles virus is infectious and elicits extensive cell fusion: consequences for propagation in the brain, EMBO J, vol.17, pp.3899-3908, 1998.

R. N. Kirchdoerfer, C. L. Moyer, D. M. Abelson, and E. O. Saphire, The Ebola virus VP30-NP interaction Is a regulator of viral RNA synthesis, PLoS Pathog, vol.12, p.1005937, 2016.

R. Cattaneo, G. Rebmann, K. Baczko, V. Ter-meulen, and M. A. Billeter, Altered ratios of measles virus transcripts in diseased human brains, Virology, vol.160, pp.523-526, 1987.

R. Cattaneo, A. Schmid, P. Spielhofer, K. Kaelin, and K. Baczko, Mutated and hypermutated genes of persistent measles viruses which caused lethal human brain diseases, Virology, vol.173, pp.415-425, 1989.

C. K. Pfaller, M. J. Radeke, R. Cattaneo, and C. E. Samuel, Measles virus C protein impairs production of defective copyback double-stranded viral RNA and activation of protein kinase R, Journal of virology, vol.88, pp.456-468, 2014.

J. Ortin and J. Martin-benito, The RNA synthesis machinery of negative-stranded RNA viruses, 2015.

R. N. Kirchdoerfer, D. M. Abelson, S. Li, M. R. Wood, and E. O. Saphire, Assembly of the Ebola Virus Nucleoprotein from a Chaperoned VP35 Complex, Cell reports, vol.12, pp.140-149, 2015.

D. W. Leung, D. Borek, P. Luthra, J. M. Binning, and M. Anantpadma, An Intrinsically Disordered Peptide from Ebola Virus VP35 Controls Viral RNA Synthesis by Modulating Nucleoprotein-RNA Interactions, Cell reports, vol.11, pp.376-389, 2015.

R. Cox, A. Pickar, S. Qiu, J. Tsao, and C. Rodenburg, Structural studies on the authentic mumps virus nucleocapsid showing uncoiling by the phosphoprotein, Proceedings of the National Academy of Sciences of the United States of America, vol.111, pp.15208-15213, 2014.

I. Ivanov, F. Yabukarski, R. W. Ruigrok, and M. Jamin, Structural insights into the rhabdovirus transcription/replication complex, Virus Research, vol.162, pp.126-137, 2011.

K. C. Prins, J. M. Binning, R. S. Shabman, D. W. Leung, and G. K. Amarasinghe, Basic residues within the ebolavirus VP35 protein are required for its viral polymerase cofactor function, Journal of virology, vol.84, pp.10581-10591, 2010.

J. Curran, H. Homann, C. Buchholz, S. Rochat, and W. Neubert, The hypervariable C-terminal tail of the Sendai paramyxovirus nucleocapsid protein is required for template function but not for RNA encapsidation, J Virol, vol.67, pp.4358-4364, 1993.

T. Das, A. K. Pattnaik, A. M. Takacs, T. Li, and L. N. Hwang, Basic amino acid residues at the carboxy-terminal eleven amino acid region of the phosphoprotein (P) are required for transcription but not for replication of vesicular stomatitis virus genome RNA, Virology, vol.238, pp.103-114, 1997.

G. Communie, J. Habchi, F. Yabukarski, D. Blocquel, and R. Schneider, Atomic Resolution Description of the Interaction between the Nucleoprotein and Phosphoprotein of Hendra Virus, PLoS Pathog, vol.9, p.1003631, 2013.
URL : https://hal.archives-ouvertes.fr/hal-01243590

K. Houben, D. Marion, N. Tarbouriech, R. W. Ruigrok, and L. Blanchard, Interaction of the C-terminal domains of sendai virus N and P proteins: comparison of polymerase-nucleocapsid interactions within the paramyxovirus family, Journal of virology, vol.81, pp.6807-6816, 2007.

J. Erales, D. Blocquel, J. Habchi, M. Beltrandi, and A. Gruet, Order and Disorder in the Replicative Complex of Paramyxoviruses, Advances in experimental medicine and biology, vol.870, pp.351-381, 2015.
URL : https://hal.archives-ouvertes.fr/hal-01439008

J. Habchi and S. Longhi, Structural Disorder within Paramyxoviral Nucleoproteins and Phosphoproteins in Their Free and Bound Forms: From Predictions to Experimental Assessment, International journal of molecular sciences, vol.16, pp.15688-15726, 2015.
URL : https://hal.archives-ouvertes.fr/hal-01439033

S. Longhi, Structural disorder within paramyxoviral nucleoproteins, FEBS letters, vol.589, pp.2649-2659, 2015.
URL : https://hal.archives-ouvertes.fr/hal-01439020

R. L. Kingston, L. S. Gay, W. S. Baase, and B. W. Matthews, Structure of the nucleocapsid-binding domain from the mumps virus polymerase; an example of protein folding induced by crystallization, Journal of molecular biology, vol.379, pp.719-731, 2008.

K. Yegambaram, E. M. Bulloch, and R. L. Kingston, Protein domain definition should allow for conditional disorder, Protein science: a publication of the Protein Society, vol.22, pp.1502-1518, 2013.

T. L. Tran, N. Castagne, D. Bhella, P. F. Varela, and J. Bernard, The nine C-terminal amino acids of the respiratory syncytial virus protein P are necessary and sufficient for binding to ribonucleoprotein complexes in which six ribonucleotides are contacted per N protein protomer, The Journal of general virology, vol.88, pp.196-206, 2007.
URL : https://hal.archives-ouvertes.fr/hal-00167652

M. Ouizougun-oubari, N. Pereira, B. Tarus, M. Galloux, and S. Lassoued, A Druggable Pocket at the Nucleocapsid/Phosphoprotein Interaction Site of Human Respiratory Syncytial Virus, Journal of virology, vol.89, pp.11129-11143, 2015.

M. Mavrakis, A. A. Mccarthy, S. Roche, D. Blondel, and R. W. Ruigrok, Structure and function of the Cterminal domain of the polymerase cofactor of rabies virus, Journal of molecular biology, vol.343, pp.819-831, 2004.

R. Assenberg, O. Delmas, J. Ren, P. O. Vidalain, and A. Verma, Structure of the nucleoprotein binding domain of Mokola virus phosphoprotein, Journal of virology, vol.84, pp.1089-1096, 2010.
URL : https://hal.archives-ouvertes.fr/pasteur-00455306

O. Delmas, R. Assenberg, J. M. Grimes, and H. Bourhy, The structure of the nucleoprotein binding domain of lyssavirus phosphoprotein reveals a structural relationship between the N-RNA binding domains of Rhabdoviridae and Paramyxoviridae, RNA biology, vol.7, pp.322-327, 2010.
URL : https://hal.archives-ouvertes.fr/pasteur-01491941

E. A. Ribeiro, A. Favier, F. C. Gerard, C. Leyrat, and B. Brutscher, Solution structure of the C-terminal nucleoprotein-RNA binding domain of the vesicular stomatitis virus phosphoprotein, J Mol Biol, vol.382, pp.525-538, 2008.

A. Ribeiro-ede, C. Leyrat, F. C. Gerard, A. A. Albertini, and C. Falk, Binding of rabies virus polymerase cofactor to recombinant circular nucleoprotein-RNA complexes, Journal of molecular biology, vol.394, pp.558-575, 2009.

T. J. Green and M. Luo, Structure of the vesicular stomatitis virus nucleocapsid in complex with the nucleocapsid-binding domain of the small polymerase cofactor, Proceedings of the National Academy of Sciences of the United States of America, vol.106, pp.11713-11718, 2009.

R. Vincentelli, S. Canaan, V. Campanacci, C. Valencia, and D. Maurin, High-throughput automated refolding screening of inclusion bodies, Protein science: a publication of the Protein Society, vol.13, pp.2782-2792, 2004.

A. Gruet, S. Longhi, and C. Bignon, One-step generation of error-prone PCR libraries using Gateway (R) technology. Microbial cell factories 11, p.14, 2012.

P. Calain and L. Roux, The rule of six, a basic feature for efficient replication of Sendai virus defective interfering RNA, Journal of Virology, vol.67, pp.4822-4830, 1993.

F. Iseni, F. Baudin, D. Garcin, J. B. Marq, and R. W. Ruigrok, Chemical modification of nucleotide bases and mRNA editing depend on hexamer or nucleoprotein phase in Sendai virus nucleocapsids, RNA, vol.8, pp.1056-1067, 2002.

L. Whitmore and B. A. Wallace, DICHROWEB, an online server for protein secondary structure analyses from circular dichroism spectroscopic data, Nucleic acids research, vol.32, pp.668-673, 2004.

L. Whitmore and B. A. Wallace, Protein secondary structure analyses from circular dichroism spectroscopy: methods and reference databases, Biopolymers, vol.89, pp.392-400, 2008.

J. Henin and C. Chipot, Overcoming free energy barriers using unconstrained molecular dynamics simulations, The Journal of chemical physics, vol.121, pp.2904-2914, 2004.

F. Radecke, P. Spielhofer, H. Schneider, K. Kaelin, and M. Huber, Rescue of measles viruses from cloned DNA, EMBO Journal, vol.14, pp.5773-5784, 1995.

M. Shingai, T. Ebihara, N. A. Begum, A. Kato, and T. Honma, Differential type I IFN-inducing abilities of wild-type versus vaccine strains of measles virus, Journal of immunology, vol.179, pp.6123-6133, 2007.

L. K. White, J. J. Yoon, J. K. Lee, A. Sun, and Y. Du, Nonnucleoside inhibitor of measles virus RNAdependent RNA polymerase complex activity, Antimicrobial agents and chemotherapy, vol.51, pp.2293-2303, 2007.

S. Finke and K. K. Conzelmann, Virus promoters determine interference by defective RNAs: selective amplification of mini-RNA vectors and rescue from cDNA by a 3' copy-back ambisense rabies virus, Journal of Virology, vol.73, pp.3818-3825, 1999.

R. A. Laskowski and M. B. Swindells, LigPlot+: multiple ligand-protein interaction diagrams for drug discovery, J Chem Inf Model, vol.51, pp.2778-2786, 2011.