Different kinds of genetic markers permit inference of Paleolithic and Neolithic expansions in humans, Eur. J. Hum. Genet, vol.25, pp.360-365, 2017. ,
Human Genetic Data Reveal Contrasting Demographic Patterns between Sedentary and Nomadic Populations That Predate the Emergence of Farming, Mol. Biol. Evol, vol.30, pp.2629-2644, 2013. ,
Microsatellite data show recent demographic expansions in sedentary but not in nomadic human populations in Africa and Eurasia, Eur. J. Hum. Genet, vol.22, pp.1201-1207, 2014. ,
Insights into the Demographic History of African Pygmies from Complete Mitochondrial Genomes, Mol. Biol. Evol, vol.28, pp.1099-1110, 2011. ,
Joint determination of topology, divergence time, and immigration in population trees, Genetics, and Human Prehistory, pp.135-154, 2008. ,
Approximate Bayesian Computation in Population, Genetics, vol.162, pp.2025-2035, 2002. ,
Comparison of Single Genome and Allele Frequency Data Reveals Discordant Demographic Histories, G3, vol.7, pp.3605-3620, 2017. ,
Descartes' rule of signs and the identifiability of population demographic models from genomic variation data, Ann. Stat, vol.42, pp.2469-2493, 2014. ,
Efficient inference of population size histories and locus-specific mutation rates from large-sample genomic variation data, Genome Res, vol.25, pp.268-279, 2015. ,
Approximate Bayesian computation: a nonparametric perspective, J. Am. Stat. Assoc.? ?, vol.105, pp.1178-1187, 2010. ,
URL : https://hal.archives-ouvertes.fr/hal-00373301
Non-linear regression models for Approximate Bayesian Computation, Stat. Comput, vol.20, pp.63-73, 2010. ,
A Comparative Review of Dimension Reduction Methods in Approximate Bayesian Computation, Stat. Sci, vol.28, pp.189-208, 2013. ,
URL : https://hal.archives-ouvertes.fr/hal-00861839
Inferring Population Size History from Large Samples of Genome-Wide Molecular Data- An Approximate Bayesian Computation Approach, PLoS Genet, vol.12, p.1005877, 2016. ,
URL : https://hal.archives-ouvertes.fr/hal-01605807
09/2015. Accurate Non-parametric Estimation of Recent Effective Population Size from Segments of Identity by Descent, Am. J. Hum. Genet, vol.97, pp.404-418 ,
Sequencing an Ashkenazi reference panel supports population-targeted personal genomics and illuminates Jewish and European origins, Nat. Commun, vol.5, p.4835, 2014. ,
The IICR (inverse instantaneous coalescence rate) as a summary of genomic diversity: insights into demographic inference and model choice, Heredity, vol.120, pp.13-24, 2018. ,
URL : https://hal.archives-ouvertes.fr/hal-01633154
, A global reference for human genetic variation, Nature, vol.526, pp.68-74, 2015.
Inferring population history with DIY ABC: a user-friendly approach to approximate Bayesian computation, Bioinformatics, vol.24, p.2713, 2008. ,
Autosomal Resequence Data Reveal Late Stone Age Signals of Population Expansion in Sub-Saharan African Foraging and Farming Populations, PLoS One, vol.4, p.6366, 2009. ,
Approximate Bayesian computation (ABC) in practice, Trends Ecol. Evol, vol.25, pp.410-418, 2010. ,
06/2012. abc: an R package for approximate Bayesian computation (ABC): ? R package: abc?, Methods Ecol. Evol, vol.3, pp.475-479 ,
Integrating sequence and array data to create an improved 1000 Genomes Project haplotype reference panel, Nat. Commun. ?, vol.5, p.3934, 2014. ,
Improved whole-chromosome phasing for disease and population genetic studies, Nat. Methods, vol.10, pp.5-6, 2013. ,
A framework for variation discovery and genotyping using next-generation DNA sequencing data, Nat. Genet, vol.43, pp.491-498, 2011. ,
Human Genome Sequencing Using Unchained Base Reads on Self-Assembling DNA Nanoarrays, Science, vol.327, pp.78-81, 2010. ,
Robust Demographic Inference from Genomic and SNP Data, PLoS Genet, vol.9, p.1003905, 2013. ,
Bayesian Analysis of an Admixture Model With Mutations and Arbitrarily Linked Markers, Genetics, vol.169, pp.1727-1738, 2005. ,
Why hunter-gatherer populations do not show signs of Pleistocene demographic expansions, Proc. Natl. Acad. Sci. U. S. A, vol.96, pp.10597-10602, 1999. ,
History of expansion and anthropogenic collapse in a top marine predator of the Black Sea estimated from genetic data, Proc. Natl. Acad. Sci. U. S. A, vol.109, pp.2569-2576, 2012. ,
A second generation human haplotype map of over 3.1 million SNPs, Nature, vol.449, pp.851-861, 2007. ,
Inferring population size changes with sequence and SNP data: lessons from human bottlenecks, Heredity, vol.110, pp.409-419, 2013. ,
URL : https://hal.archives-ouvertes.fr/hal-00809457
Neutral genomic regions refine models of recent rapid human population growth, Proceedings of the National Academy of Sciences, vol.111, pp.757-762, 2014. ,
Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data, PLoS Genet, vol.5, p.1000695, 2009. ,
Inferring demographic history from a spectrum of shared haplotype lengths, PLoS Genet, vol.9, p.1003521, 2013. ,
The landscape of recombination in African Americans, Nature, vol.476, pp.170-175, 2011. ,
Measurement of the human allele frequency spectrum demonstrates greater genetic drift in East Asians than in Europeans, Nat. Genet, vol.10, pp.1251-1255, 2007. ,
A high-resolution recombination map of the human genome, Nat. Genet, vol.31, pp.241-247, 2002. ,
Accuracy of demographic inferences from the site frequency spectrum: the case of the Yoruba population, Genetics, vol.206, pp.439-449, 2017. ,
PhredEM: a phred-score-informed genotype-calling approach for next-generation sequencing studies, Genet. Epidemiol, vol.41, pp.375-387, 2017. ,
A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data, Bioinformatics, vol.27, pp.2987-2993, 2011. ,
Inference of human population history from individual whole-genome sequences, Nature, vol.475, pp.493-496, 2011. ,
Estimating demographic parameters from large-scale population genomic data using Approximate Bayesian Computation, BMC Genet, vol.13, p.22, 2012. ,
Exploring population size changes using SNP frequency spectra, Nat. Genet, vol.47, pp.555-559, 2015. ,
DOI : 10.1038/ng.3254
URL : http://europepmc.org/articles/pmc4414822?pdf=render
Inferring Demography from Runs of Homozygosity in Whole-Genome Sequence, with Correction for Sequence Errors, Mol. Biol. Evol, vol.30, pp.2209-2223, 2013. ,
Fast" coalescent" simulation, BMC Genet, vol.7, p.1, 2006. ,
SeqEM: an adaptive genotype-calling approach for next-generation sequencing studies, Bioinformatics, vol.26, pp.2803-2810, 2010. ,
On the importance of being structured: instantaneous coalescence rates and human evolution-lessons for ancestral population size inference, Heredity, vol.116, pp.362-371, 2016. ,
URL : https://hal.archives-ouvertes.fr/hal-01633153
Approximating the coalescent with recombination, Philos. Trans. R. Soc. Lond. B Biol. Sci, vol.360, pp.1387-1393, 2005. ,
Length Distributions of Identity by Descent Reveal Fine-Scale Demographic History, Am. J. Hum. Genet, vol.91, pp.809-822, 2012. ,
Statistical Inference on Genetic Data Reveals the Complex Demographic History of Human Populations in Central Asia, Mol. Biol. Evol, vol.32, pp.1411-1424, 2015. ,
Inferring the Demographic History of African Farmers and Pygmy Hunter-Gatherers Using a Multilocus Resequencing Data Set, PLoS Genet, vol.5, p.1000448, 2009. ,
URL : https://hal.archives-ouvertes.fr/hal-00397240
The impact of agricultural emergence on the genetic history of African rainforest hunter-gatherers and agriculturalists, Nat. Commun. ?, vol.5, p.3163, 2014. ,
URL : https://hal.archives-ouvertes.fr/halshs-01178754
Reliable ABC model choice via random forests, Bioinformatics, vol.32, pp.859-866, 2016. ,
URL : https://hal.archives-ouvertes.fr/hal-01067925
Genome-wide inference of ancestral recombination graphs, PLoS Genet, vol.10, p.1004342, 2014. ,
Revising the human mutation rate: implications for understanding human evolution, Nat. Rev. Genet, vol.13, pp.745-753, 2012. ,
Calibrating a coalescent simulation of human genome sequence variation, Genome Res, vol.15, p.1576, 2005. ,
Inferring human population size and separation history from multiple genome sequences, Nat. Genet, vol.46, pp.919-925, 2014. ,
DOI : 10.1101/005348
URL : https://www.biorxiv.org/content/biorxiv/early/2014/05/23/005348.full.pdf
Tales of Human Migration, Admixture, and Selection in Africa, Annu. Rev. Genomics Hum. Genet, vol.19, pp.405-428, 2018. ,
Methods and models for unravelling human evolutionary history, Nat. Rev. Genet. ?, vol.16, p.727, 2015. ,
Determinants of Mutation Rate Variation in the Human Germline, Annu. Rev. Genomics Hum. Genet, vol.15, pp.47-70, 2014. ,
Demographic inferences using short-read genomic data in an Approximate Bayesian Computation framework: in silico evaluation of power, biases, and proof of concept in Atlantic walrus, Mol. Ecol. ?, vol.24, pp.328-345, 2014. ,
Estimating variable effective population sizes from multiple genomes: a sequentially markov conditional sampling distribution approach, Genetics, vol.194, pp.647-662, 2013. ,
Deep learning for population genetic inference, PLoS Comput. Biol, vol.12, p.1004845, 2016. ,
DOI : 10.1371/journal.pcbi.1004845
URL : https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1004845&type=printable
Resequencing Data Provide No Evidence for a Human Bottleneck in Africa during the Penultimate Glacial Period, Mol. Biol. Evol.?, vol.29, pp.1851-1860, 2012. ,
The Expansion of mtDNA Haplogroup L3 within and out of Africa, Mol. Biol. Evol, vol.29, pp.915-927, 2012. ,
Approximate Bayesian Computation, PLoS Comput. Biol, vol.9, p.1002803, 2013. ,
Evolution and Functional Impact of Rare Coding Variation from Deep Sequencing of Human Exomes, Science, vol.337, pp.64-69, 2012. ,
Robust and scalable inference of population history from hundreds of unphased whole genomes, Nat. Genet, vol.49, pp.303-309, 2017. ,
Inferring the History of Population Size Change from Genome-Wide SNP Data, Mol. Biol. Evol, vol.29, pp.3653-3667, 2012. ,
The impact of whole-genome sequencing on the reconstruction of human population history, Nat. Rev. Genet, vol.15, pp.149-162, 2014. ,
Estimating genotype error rates from high-coverage next-generation sequence data, Genome Res, vol.11, pp.1734-1739, 2014. ,
, Group Proba Ncurrent Ninterm Nbot Nancient TExp2