J. Watson, N. Dudley, D. B. Segan, and M. Hockings, The performance and potential of protected areas, Nature, vol.515, pp.67-73, 2014.

A. F. Filipe, T. A. Marques, P. Tiago, F. Ribeiro, D. Costa et al., Selection of priority areas for fish conservation in Guadiana river basin, Iberian Peninsula, Conserv. Biol, vol.18, pp.189-200, 2004.

J. B. Kirkpatrick, An iterative method for establishing priorities for the selection of nature reserves: an example from Tasmania, Biol. Conserv, vol.25, pp.127-134, 1983.

C. R. Margules and R. L. Pressey, Systematic conservation planning, Nature, vol.405, pp.243-253, 2000.

R. I. Vane-wright, C. J. Humphries, and P. H. Williams, What to protect? Systematics and the agony of choice, Biol. Conserv, vol.55, issue.91, p.90030, 1991.

D. P. Faith, Conservation evaluation and phylogenetic diversity, Biol. Conserv, vol.61, pp.1-10, 1992.

M. G. Asmyhr, S. Linke, G. Hose, and D. A. Nipperess, Systematic conservation planning for groundwater ecosystems using phylogenetic diversity, PLoS ONE, vol.9, 2014.

S. Buerki, M. W. Callmander, S. Bachman, J. Moat, J. Labat et al., Incorporating evolutionary history into conservation planning in biodiversity hotspots, Phil. Trans. R. Soc. B, vol.370, 2015.

S. B. Carvalho, G. Velo-antón, P. Tarroso, A. P. Portela, M. Barata et al., Spatial conservation prioritization of biodiversity spanning the evolutionary continuum, Nat. Ecol. Evol, vol.1, p.151, 2017.

H. A. Thomassen, Mapping evolutionary process: a multi-taxa approach to conservation prioritization, Evol. Appl, vol.4, pp.397-413, 2011.

J. Diniz-filho, Planning for optimal conservation of geographical genetic variability within species, Conserv. Genet, vol.13, pp.1085-1093, 2012.

J. O. Hanson, J. R. Rhodes, C. Riginos, and R. A. Fuller, Environmental and geographic variables are effective surrogates for genetic variation in conservation planning, Proc. Natl Acad. Sci. USA, vol.114, pp.755-767, 2017.

V. Hermoso, M. J. Kennard, D. J. Schmidt, N. Bond, J. A. Huey et al., , 2016.

, Species distributions represent intraspecific genetic diversity of freshwater fish in conservation assessments, Freshw. Biol, vol.61, pp.1707-1719

S. P. Carroll, P. S. Jorgensen, M. T. Kinnison, C. T. Bergstrom, R. F. Denison et al., Applying evolutionary biology to address global challenges, Science, vol.346, p.1245993, 2014.

O. Rey, E. Danchin, M. Mirouze, C. Loot, and S. Blanchet, Adaptation to global change: a transposable element -epigenetics perspective, Trends Ecol. Evol, vol.31, pp.514-526, 2016.
URL : https://hal.archives-ouvertes.fr/hal-02099870

E. A. Mittell, S. Nakagawa, and J. D. Hadfield, Are molecular markers useful predictors of adaptive potential?, Ecol. Lett, vol.18, pp.772-778, 2015.

J. K. Pritchard, M. Stephens, and P. Donnelly, Inference of population structure using multilocus genotype data, Genetics, vol.155, pp.945-959, 2000.

A. I. Putman and I. Carbone, Challenges in analysis and interpretation of microsatellite data for population genetic studies, Ecol. Evol, vol.4, pp.4399-4428, 2014.

S. Blanchet, J. G. Prunier, D. Kort, and H. , Time to go bigger: emerging patterns in macrogenetics, Trends Genet, vol.33, pp.579-580, 2017.

C. Moritz, Defining 'Evolutionarily Significant Units' for conservation, Trends Ecol. Evol, vol.9, pp.373-375, 1994.

R. S. Waples, Characterizing diversity in salmon from the Pacific Northwest, J. Fish Biol, vol.59, pp.1-41, 2001.

R. Frankham, D. A. Briscoe, and J. D. Ballou, Introduction to conservation genetics, 2002.

M. Kottelat and J. Freyhof, Handbook of European freshwater fishes, 2007.

N. Poulet, L. Beaulaton, and S. Dembski, Time trends in fish populations in metropolitan France: insights from national monitoring data, J. Fish Biol, vol.79, pp.1436-1452, 2011.

I. Paz-vinas, E. Quéméré, L. Chikhi, G. Loot, and S. Blanchet, The demographic history of populations experiencing asymmetric gene flow: combining simulated and empirical data, Mol. Ecol, vol.22, pp.3279-3291, 2013.

I. Paz-vinas, L. Comte, M. Chevalier, V. Dubut, C. Veyssiere et al., Combining genetic and demographic data for prioritizing conservation actions: insights from a threatened fish species, Ecol. Evol, vol.3, pp.2696-2710, 2013.

S. M. Aljanabi and I. Martinez, Universal and rapid salt-extraction of high quality genomic DNA for PCR-based techniques, Nucleic Acids Res, vol.25, pp.4692-4693, 1997.

Z. A. Szpiech, M. Jakobsson, and N. A. Rosenberg, ADZE: a rarefaction approach for counting alleles private to combinations of populations, Bioinformatics, vol.24, pp.2498-2504, 2008.

D. J. Winter, 2012 mmod: an R library for the calculation of population differentiation statistics, Mol. Ecol. Resour, vol.12, pp.1158-1160

L. Jost, G(st) and its relatives do not measure differentiation, Mol. Ecol, vol.17, pp.4015-4026, 2008.

E. Peterson, V. Hoef, and J. , STARS: an ArcGIS toolset used to calculate the spatial information needed to fit spatial statistical models to stream network data, J. Stat. Softw, vol.56, pp.1-17, 2014.

J. Ver-hoef, E. Peterson, D. Clifford, and R. Shah, SSN: an R package for spatial statistical modeling on stream networks, J. Stat. Softw, vol.56, pp.1-43, 2014.

I. R. Ball, H. P. Possingham, and M. Watts, Marxan and relatives: software for spatial conservation prioritisation, Spatial conservation prioritisation: quantitative methods and computational tools, pp.185-195, 2009.

D. S. Finn, N. Bonada, C. Múrria, and J. M. Hughes, Small but mighty: headwaters are vital to stream network biodiversity at two levels of organization, J. North Am. Benthol. Soc, vol.30, pp.963-980, 2011.

E. Estrada and O. Bodin, Using network centrality measures to manage landscape connectivity, Ecol. Appl, vol.18, pp.1810-1825, 2008.

F. Altermatt, Diversity in riverine metacommunities: a network perspective, Aquat. Ecol, vol.47, pp.365-377, 2013.

L. Fourtune, I. Paz-vinas, G. Loot, J. G. Prunier, and S. Blanchet, Lessons from the fish: a multi-species analysis reveals common processes underlying similar species-genetic diversity correlations, Freshw. Biol, vol.61, pp.1830-1845, 2016.
URL : https://hal.archives-ouvertes.fr/hal-01444024

M. A. Fortuna, R. G. Albaladejo, L. Fernandez, A. Aparicio, and J. Bascompte, Networks of spatial genetic variation across species, Proc. Natl Acad. Sci. USA, vol.106, pp.44-63, 2009.

P. Taberlet, Genetic diversity in widespread species is not congruent with species richness in alpine plant communities, Ecol. Lett, vol.15, pp.1439-1448, 2012.
URL : https://hal.archives-ouvertes.fr/hal-00991324

I. Paz-vinas, G. Loot, V. M. Stevens, and S. Blanchet, Evolutionary processes driving spatial patterns of intraspecific genetic diversity in river ecosystems, Mol. Ecol, vol.24, pp.4586-4604, 2015.
URL : https://hal.archives-ouvertes.fr/hal-01445151

I. Paz-vinas and S. Blanchet, Dendritic connectivity shapes spatial patterns of genetic diversity: a simulation-based study, J. Evol. Biol, vol.28, pp.986-994, 2015.
URL : https://hal.archives-ouvertes.fr/hal-01445202

A. T. Thomaz, M. R. Christie, and L. L. Knowles, The architecture of river networks can drive the evolutionary dynamics of aquatic populations, Evolution, vol.70, pp.731-739, 2016.

L. Fourtune, J. G. Prunier, I. Paz-vinas, G. Loot, C. Veyssière et al., Inferring causalities in landscape genetics: an extension of Wright's causal modeling to distance matrices, Am. Nat, vol.191, pp.491-508, 2018.
URL : https://hal.archives-ouvertes.fr/hal-01732611

M. Mimura, Understanding and monitoring the consequences of human impacts on intraspecific variation, Evol. Appl, vol.10, pp.121-139, 2017.