M. Mann and O. N. Jensen, Proteomic analysis of post-translational modifications

M. C. Crowe and J. S. Brodbelt, Infrared multiphoton dissociation (IRMPD) and

J. H. Bowie, C. S. Brinkworth, and S. Dua, Collision-induced fragmentations of the (M-H)? parent anions of underivatized peptides: An aid to structure determination and some unusual negative ion cleavages, Mass Spectrom. Rev, vol.21, pp.87-107, 2002.

J. B. Shaw, D. A. Kaplan, and J. S. Brodbelt, Activated Ion Negative Electron Transfer Dissociation of Multiply Charged Peptide Anions, Anal. Chem, vol.85, pp.4721-4728, 2013.

T. Kim and J. P. Reilly, Time-Resolved Observation of Product Ions Generated by 157 nm Photodissociation of Singly Protonated Phosphopeptides, J. Am. Soc. Mass Spectrom, vol.20, pp.2334-2341, 2009.

M. R. Robinson, K. L. Moore, and J. S. Brodbelt, Direct Identification of Tyrosine Sulfation by using Ultraviolet Photodissociation Mass Spectrometry, J. Am. Soc. Mass Spectrom, vol.25, pp.1461-1471, 2014.

J. A. Madsen, T. S. Kaoud, K. N. Dalby, and J. S. Brodbelt, 193-Nm Photodissociation of Singly and Multiply Charged Peptide Anions for Acidic Proteome Characterization

, Proteomics, vol.11, pp.1329-1334, 2011.

, Sequence Interpretation of N-Terminal Sulfonated Peptides in a Quadrupole Ion Trap, Anal. Chem, vol.78, pp.6855-6862, 2006.

M. Pikulski, A. Hargrove, S. H. Shabbir, E. V. Anslyn, and J. S. Brodbelt, Sequencing and Characterization of Oligosaccharides Using Infrared Multiphoton Dissociation and Boronic Acid Derivatization in a Quadrupole Ion Trap, J. Am. Soc. Mass Spectrom, vol.18, pp.2094-2106, 2007.

B. Li, S. C. Russell, J. Zhang, J. L. Hedrick, and C. B. Lebrilla, Structure determination by MALDI-IRMPD mass spectrometry and exoglycosidase digestions of O-linked oligosaccharides from Xenopus borealis egg jelly, Glycobiology, vol.21, pp.877-894, 2011.

Y. Park and C. B. Lebrilla, Application of Fourier transform ion cyclotron resonance mass spectrometry to oligosaccharides, Mass Spectrom. Rev, vol.24, pp.232-264, 2005.

J. S. Brodbelt and J. J. Wilson, Infrared multiphoton dissociation in quadrupole ion traps, Mass Spectrom. Rev, vol.28, pp.390-424, 2009.

W. Zhou and K. Hakansson, Structural Characterization of Carbohydrates by Fourier Transform Tandem Mass Spectrometry, Curr. Proteomics, vol.8, pp.297-308, 2011.

M. Girod, Z. Sanader, M. Vojkovic, R. Antoine, L. Macaleese et al., UV Photodissociation of Proline-containing Peptide Ions: Insights from Molecular Dynamics, J. Am. Soc. Mass Spctrom, vol.26, pp.432-443, 2014.
URL : https://hal.archives-ouvertes.fr/hal-01345987

M. A. Halim, M. Girod, L. Macaleese, J. Lemoine, R. Antoine et al., Combined Infrared Multiphoton Dissociation with Ultraviolet Photodissociation for Ubiquitin Characterization, J. Am. Soc. Mass Spectrom, vol.27, pp.1435-1442, 2016.
URL : https://hal.archives-ouvertes.fr/hal-01344631

J. W. Flora and D. C. Muddiman, Determination of the relative energies of activation for the dissociation of aromatic versus aliphatic phosphopeptides by ESI-FTICR-MS and IRMPD, J. Am. Soc. Mass Spectrom, vol.15, pp.121-127, 2004.

H. Han, Y. Xia, and S. A. Mcluckey, Ion Trap Collisional Activation of c and z? Ions Formed via Gas-Phase Ion/Ion Electron-Transfer Dissociation, J. Proteome Res, vol.6, pp.3062-3069, 2007.

R. Antoine, J. Lemoine, and P. Dugourd, Electron Photodetachment Dissociation for Structural Characterization of Synthetic and Bio-Polymer Anions, Mass Spectrom. Rev, vol.33, pp.501-522, 2014.
URL : https://hal.archives-ouvertes.fr/hal-00954983

J. Madsen, R. R. Cheng, T. S. Kaoud, K. Dalby, D. E. Makarov et al., Chargesite-dependent dissociation of hydrogen-rich radical peptide cations upon vacuum UV photoexcitation, Chem. Eur. J, vol.18, pp.5374-5383, 2012.

J. Degnore and J. Qin, Fragmentation of phosphopeptides in an ion trap mass spectrometer, J. Am. Soc. Mass Spectrom, vol.9, pp.88-97, 1998.

A. Tholey, J. Reed, and W. D. Lehmann, Electrospray tandem mass spectrometric studies of phosphopeptides and phosphopeptide analogues, J Mass Spectrom, vol.34, pp.117-123, 1999.

S. C. Moyer, C. E. Vonseggern, and R. J. Cotter, Fragmentation of cationized phosphotyrosine containing peptides by atmospheric pressure MALDI/Ion trap mass spectrometry, J. Am. Soc. Mass Spectrom, vol.14, issue.03, pp.142-151, 2003.

R. S. Annan and S. Carr, Phosphopeptide analysis by matrix-assisted laser desorption time-of-flight mass spectrometry, Anal. Chem, vol.68, pp.3413-3421, 1996.

R. Paciotti, C. Coletti, N. Re, D. Scuderi, B. Chiavarino et al., Serine O-sulfation probed by IRMPD spectroscopy, Phys. Chem. Chem. Phys, vol.17, pp.25891-25904, 2015.

B. A. Budnik, K. F. Haselmann, and R. A. Zubarev, Electron detachment dissociation of peptide di-anions: An electron-hole recombination phenomenon, Chem. Phys. Lett, vol.342, pp.299-302, 2001.

R. R. Seipert, E. D. Dodds, and C. B. Lebrilla, Exploiting differential dissociation chemistries of O-linked glycopeptide ions for the localization of mucin-type protein glycosylation, J. Proteome Res, vol.8, pp.493-501, 2009.

Z. Zhu, X. Su, D. F. Clark, E. P. Go, and H. Desaire, Characterizing O-Linked glycopeptides by electron transfer dissociation: Fragmentation rules and applications in data analysis, Anal. Chem, vol.85, pp.8403-8411, 2013.