A. Acevedo-gutiérrez and S. Stienessen, Bottlenose Dolphins (<I>Tursiops truncatus</I>) Increase Number of Whistles When Feeding, Aquatic Mammals, vol.30, issue.3, pp.357-362, 2004.
DOI : 10.1578/AM.30.3.2004.357

M. Amorim, Diversity of sound production in fish, Science Publishers, vol.1, pp.71-104, 2006.

M. Anderson and R. Millar, Spatial variation and effects of habitat on temperate reef fish assemblages in northeastern New Zealand, Journal of Experimental Marine Biology and Ecology, vol.305, issue.2, pp.191-221, 2004.
DOI : 10.1016/j.jembe.2003.12.011

P. Archambault and E. Bourget, Scales of coastal heterogeneity and benthic intertidal species richness, diversity and abundance, Marine Ecology Progress Series, vol.136, pp.111-121, 1996.
DOI : 10.3354/meps136111

P. Archambault and E. Bourget, Influence of shoreline configuration on spatial variation of meroplanktonic larvae, recruitment and diversity of benthic subtidal communities, Journal of Experimental Marine Biology and Ecology, vol.238, issue.2, pp.161-184, 1999.
DOI : 10.1016/S0022-0981(98)00146-4

W. Au and K. Banks, in Kaneohe Bay, The Journal of the Acoustical Society of America, vol.103, issue.1, pp.41-47, 1998.
DOI : 10.1121/1.423234

W. Au and M. Hastings, Principles of marine bioacoustics, Marine Ecology Acoustic indices to differentiate benthic biophonies, 2008.
DOI : 10.1007/978-0-387-78365-9

J. Bell and M. Westoby, Variation in seagrass height and density over a wide spatial scale: Effects on common fish and decapods, Journal of Experimental Marine Biology and Ecology, vol.104, issue.1-3, pp.275-295, 1986.
DOI : 10.1016/0022-0981(86)90110-3

F. Bertucci, E. Parmentier, L. Berten, R. Brooker, and D. Lecchini, Temporal and Spatial Comparisons of Underwater Sound Signatures of Different Reef Habitats in Moorea Island, French Polynesia, PLOS ONE, vol.1, issue.9, 2015.
DOI : 10.1371/journal.pone.0135733.t001

URL : https://hal.archives-ouvertes.fr/hal-01211705

G. Buscaino, M. Ceraulo, N. Pieretti, V. Corrias, and . Others, Temporal patterns in the soundscape of the shallow waters of a Mediterranean marine protected area, Scientific Reports, vol.36, issue.433, pp.34230-34230, 2016.
DOI : 10.1016/j.eswa.2008.01.039

J. Butler, J. Stanley, M. Butler, and . Iv, Underwater soundscapes in near-shore tropical habitats and the effects of environmental degradation and habitat restoration, Journal of Experimental Marine Biology and Ecology, vol.479, pp.89-96, 2016.
DOI : 10.1016/j.jembe.2016.03.006

M. Chitre, M. Legg, and T. Koay, Snapping shrimp dominated natural soundscape in Singapore waters, Contrib Mar Sci, vol.2012, pp.127-134, 2012.

L. Coquereau, J. Grall, L. Chauvaud, C. Gervaise, J. Clavier et al., Sound production and associated behaviours of benthic invertebrates from a coastal habitat in the north-east Atlantic, Marine Biology, vol.34, issue.433, pp.1-13, 2016.
DOI : 10.1121/1.1909155

URL : https://hal.archives-ouvertes.fr/hal-01447557

L. Coquereau, J. Grall, J. Clavier, A. Jolivet, and L. Chauvaud, Acoustic behaviours of large crustaceans in NE Atlantic coastal habitats, Aquatic Biology, vol.25, pp.151-163, 2016.
DOI : 10.3354/ab00665

URL : https://hal.archives-ouvertes.fr/hal-01483215

L. Coquereau, A. Jolivet, H. Hégaret, and L. Chauvaud, Short-Term Behavioural Responses of the Great Scallop Pecten maximus Exposed to the Toxic Alga Alexandrium minutum Measured by Accelerometry and Passive Acoustics, PLOS ONE, vol.3, issue.433, p.160935, 2016.
DOI : 10.1371/journal.pone.0160935.s003

URL : https://hal.archives-ouvertes.fr/hal-01483225

L. Coquereau, J. Lossent, J. Grall, and L. Chauvaud, Marine soundscape shaped by fishing activity, Royal Society Open Science, vol.6, issue.1, p.160606, 2017.
DOI : 10.1038/srep33829

URL : https://hal.archives-ouvertes.fr/hal-01483134

J. Crawford, P. Jacob, and V. Benech, Sound Production and Reproductive Ecology of Strongly Acoustic Fish in Africa: Pollimyrus Isidori, Mormyridae, Behaviour, vol.134, issue.9, pp.677-725, 1997.
DOI : 10.1163/156853997X00034

D. Iorio, L. Gervaise, C. Jaud, V. Robson, A. Chauvaud et al., Hydrophone detects cracking sounds: non-intrusive monitoring of bivalve movement, J Exp Mar Biol Ecol, vol.432432, 2012.
URL : https://hal.archives-ouvertes.fr/hal-00731843

B. Efron and R. Tibshirani, THE BOOTSTRAP METHOD FOR ASSESSING STATISTICAL ACCURACY, Behaviormetrika, vol.12, issue.17, pp.1-35, 1985.
DOI : 10.2333/bhmk.12.17_1

D. Eggleston, A. Lillis, and D. Bohnenstiehl, Soundscapes and larval settlement: larval bivalve responses to habitat-associated underwater sounds (eds) The effects of noise on aquatic life II, pp.255-263, 2016.

O. Ellers, Discrimination Among Wave-Generated Sounds by a Swash-Riding Clam, The Biological Bulletin, vol.189, issue.2, pp.128-1371542463, 1995.
DOI : 10.2307/1542463

A. Farina and P. James, The acoustic communities: Definition, description and ecological role, Biosystems, vol.147, pp.11-20, 2016.
DOI : 10.1016/j.biosystems.2016.05.011

B. Ferguson and J. Cleary, source level and source position estimates of biological transient signals produced by snapping shrimp in an underwater environment, The Journal of the Acoustical Society of America, vol.109, issue.6, pp.3031-30371339823, 2001.
DOI : 10.1121/1.1339823

C. Gervaise, Y. Simard, N. Roy, B. Kinda, and N. Ménard, Shipping noise in whale habitat: Characteristics, sources, budget, and impact on belugas in Saguenay???St. Lawrence Marine Park hub, The Journal of the Acoustical Society of America, vol.132, issue.1, pp.76-894728190, 2012.
DOI : 10.1121/1.4728190

URL : https://hal.archives-ouvertes.fr/hal-00857183

S. Gobert, S. Sartoretto, V. Rico-raimondino, B. Andral, C. A. Lejeune et al., Assessment of the ecological status of Mediterranean French coastal waters as Marine Ecology Acoustic indices to differentiate benthic biophonies, 2009.

S. Gobert, A. Chéry, A. Volpon, C. Pelaprat, and P. Lejeune, The Seascape as an Indicator of Environmental Interest and Quality of the Mediterranean Benthos: The in Situ Development of a Description Index: The LIMA, pp.277-291, 2014.
DOI : 10.1007/978-3-319-03440-9_18

S. Harris, N. Shears, and C. Radford, Ecoacoustic indices as proxies for biodiversity on temperate reefs, Methods in Ecology and Evolution, vol.59, issue.6, pp.713-724, 2016.
DOI : 10.1111/j.1095-8649.2001.tb00202.x

P. Hastings and A. ?irovi?, Soundscapes offer unique opportunities for studies of fish communities: Fig. 1., Proceedings of the National Academy of Sciences, vol.76, issue.4, pp.5866-58671505897112, 2015.
DOI : 10.1093/beheco/aru029

A. Hawkins, Underwater sound and fish behaviour The behaviour of teleost fishes, pp.114-151, 1986.

J. Hildebrand, Anthropogenic and natural sources of ambient noise in the ocean, Marine Ecology Progress Series, vol.395, pp.5-20, 2009.
DOI : 10.3354/meps08353

F. Holon, P. Boissery, A. Guilbert, E. Freschet, and J. Deter, The impact of 85 years of coastal development on shallow seagrass beds (Posidonia oceanica L. (Delile)) in South Eastern France: A slow but steady loss without recovery, Estuarine, Coastal and Shelf Science, vol.165, pp.204-212, 2015.
DOI : 10.1016/j.ecss.2015.05.017

C. Huijbers, I. Nagelkerken, P. Lössbroek, I. Schulten, A. Siegenthaler et al., A test of the senses: Fish select novel habitats by responding to multiple cues, Ecology, vol.93, issue.1, pp.46-5510, 2012.
DOI : 10.1007/s00338-009-0572-y

M. Johnson, F. Everest, and R. Young, THE ROLE OF SNAPPING SHRIMP (CRANGON AND SYNALPHEUS) IN THE PRODUCTION OF UNDERWATER NOISE IN THE SEA, The Biological Bulletin, vol.93, issue.2, pp.122-1381538284, 1947.
DOI : 10.2307/1538284

E. Kennedy, M. Holderied, J. Mair, H. Guzman, and S. Simpson, Spatial patterns in reef-generated noise relate to habitats and communities: Evidence from a Panamanian case study, Journal of Experimental Marine Biology and Ecology, vol.395, issue.1-2, pp.85-92, 2010.
DOI : 10.1016/j.jembe.2010.08.017

G. Kinda, Y. Simard, C. Gervaise, J. Mars, and L. Fortier, Under-ice ambient noise in Eastern Beaufort Sea, Canadian Arctic, and its relation to environmental forcing, The Journal of the Acoustical Society of America, vol.134, issue.1, pp.77-874808330, 2013.
DOI : 10.1121/1.4808330

URL : https://hal.archives-ouvertes.fr/hal-00844358

G. Kinda, Y. Simard, C. Gervaise, J. Mars, and L. Fortier, Arctic underwater noise transients from sea ice deformation: Characteristics, annual time series, and forcing in Beaufort Sea, The Journal of the Acoustical Society of America, vol.138, issue.4, pp.2034-20454929491, 2015.
DOI : 10.1121/1.4929491

URL : https://hal.archives-ouvertes.fr/hal-01199284

R. Knowlton and J. Moulton, SOUND PRODUCTION IN THE SNAPPING SHRIMPS ALPHEUS (CRANGON) AND SYNALPHEUS ,, The Biological Bulletin, vol.125, issue.2, pp.311-331, 1963.
DOI : 10.2307/1539406

B. Krause, Bioacoustics: Habitat Ambience & Ecological Balance, Whole Earth Review, vol.57, pp.14-16, 1987.

P. Lejeune, A. Abadie, M. Binard, R. Biondo, A. Borges et al., STARE-CAPMED (STation of Reference and rEsearch on Change of local and global Anthropogenic Pressures on Mediterranean Ecosystems Drifts): rapport d'activité 2013 Estuarine soundscapes: distinct acoustic characteristics of oyster reefs compared to soft-bottom habitats, Bohnenstiehl DR Mar Ecol Prog Ser, vol.5053354, pp.1-17, 2013.

S. Lillis, A. Eggleston, D. Bohnenstiehl, and D. , Soundscape variation from a larval perspective: the case for habitat-associated sound as a settlement cue for weakly swimming estuarine larvae, Progress DOI: 10.3354, pp.57-70, 2014.
DOI : 10.3354/meps10917

J. Luczkovich, D. Mann, and R. Rountree, Passive Acoustics as a Tool in Fisheries Science, Transactions of the American Fisheries Society, vol.2, issue.2, pp.533-541, 2008.
DOI : 10.2307/1441036

D. Mann and T. Grothues, Short-term upwelling events modulate fish sound production at a mid-Atlantic Ocean observatory, Marine Ecology Progress Series, vol.375, pp.65-71, 2009.
DOI : 10.3354/meps07720

D. Mathias, C. Gervaise, D. Iorio, and L. , Wind dependence of ambient noise in a biologically rich coastal area, The Journal of the Acoustical Society of America, vol.139, issue.2, pp.839-8504941917, 2016.
DOI : 10.1121/1.4941917

J. Mcwilliam and A. Hawkins, A comparison of inshore marine soundscapes, Journal of Experimental Marine Biology and Ecology, vol.446, pp.166-176, 2013.
DOI : 10.1016/j.jembe.2013.05.012

H. Medwin and C. Clay, Fundamentals of acoustical oceanography, 1997.

J. Montgomery, A. Jeffs, S. Simpson, M. Meekan, C. Tindle et al., Sound as an orientation cue for the pelagic larvae of reef fishes and decapod crustaceans Soundscapes and living communities in coral reefs: temporal and spatial variation, Adv Mar Biol Mar Ecol Prog Ser, vol.513354, issue.524, pp.143-196125, 2006.

E. Parmentier, L. Berten, P. Rigo, F. Aubrun, S. Nedelec et al., The influence of various reef sounds on coral-fish larvae behaviour, Journal of Fish Biology, vol.7, issue.5, pp.1507-151812651, 2015.
DOI : 10.1098/rsbl.2011.0380

URL : https://hal.archives-ouvertes.fr/hal-01174223

S. Patek, Spiny lobsters stick and slip to make sound, Nature, vol.113, issue.6834, pp.153-154, 2001.
DOI : 10.2307/1539086

J. Piercy, E. Codling, A. Hill, D. Smith, and S. Simpson, Habitat quality affects sound production and likely distance of detection on coral reefs, Marine Ecology Progress Series, vol.516, pp.35-47, 2014.
DOI : 10.3354/meps10986

B. Pijanowski, L. Villanueva-rivera, S. Dumyahn, A. Farina, and . Others, Soundscape Ecology: The Science of Sound in the Landscape, BioScience, vol.1, issue.3, pp.203-216, 2011.
DOI : 10.1642/0004-8038(2006)123[650:SSMMSV]2.0.CO;2

A. Popper, M. Salmon, and K. Horch, Acoustic detection and communication by decapod crustaceans, Quantum GIS Geographic Information System. Open Source Geospatial Foundation, pp.83-89, 2001.
DOI : 10.1007/s003590100184

C. Radford, A. Jeffs, C. Tindle, and J. Montgomery, Resonating sea urchin skeletons create coastal choruses, Marine Ecology Progress Series, vol.362, pp.37-43, 2008.
DOI : 10.3354/meps07444

URL : http://www.int-res.com/articles/meps2008/362/m362p037.pdf

C. Radford, J. Stanley, C. Tindle, J. Montgomery, and A. Jeffs, Localised coastal habitats have distinct underwater sound signatures, Marine Ecology Progress Series, vol.401, pp.21-29, 2010.
DOI : 10.3354/meps08451

URL : http://www.int-res.com/articles/meps2009/401/m401p021.pdf

C. Radford, C. Tindle, J. Montgomery, and A. Jeffs, Modelling a reef as an extended sound source increases the predicted range at which reef noise may be heard by fish larvae, Marine Ecology Progress Series, vol.438, pp.167-174, 2011.
DOI : 10.3354/meps09312

J. Richir, A. Abadie, M. Binard, R. Biondo, and . Others, STARE-CAPMED (STAtion of Reference and rEsearch on Change of local and global Anthropogenic Pressures on Mediterranean Ecosystems Drifts). STARESO, Calvi Marine Ecology Acoustic indices to differentiate benthic biophonies, 2014.

T. Rossi, I. Nagelkerken, J. Pistevos, and S. Connell, Lost at sea: ocean acidification undermines larval fish orientation via altered hearing and marine soundscape modification, Biology Letters, vol.24, issue.1, p.937, 2016.
DOI : 10.1098/rspb.2015.1954

URL : http://rsbl.royalsocietypublishing.org/content/roybiolett/12/1/20150937.full.pdf

T. Rossi, S. Connell, and I. Nagelkerken, Silent oceans: ocean acidification impoverishes natural soundscapes by altering sound production of the world's noisiest marine invertebrate, Proceedings of the Royal Society B: Biological Sciences, vol.281, issue.1826, p.3046, 2016.
DOI : 10.1111/gcb.13167

R. Rountree, R. Gilmore, C. Goudey, A. Hawkins, J. Luczkovich et al., Listening to Fish, Fisheries, vol.31, issue.9, pp.433-446, 2006.
DOI : 10.1577/1548-8446(2006)31[433:LTF]2.0.CO;2

L. Ruppé, G. Clément, A. Herrel, L. Ballesta, T. Décamps et al., Environmental constraints drive the partitioning of the soundscape in fishes, Proceedings of the National Academy of Sciences, vol.102, issue.9 & 10, pp.6092-60971424667112, 2015.
DOI : 10.1242/jeb.087205

C. Seytre and P. Francour, The Cap Roux MPA (Saint-Raphael, French Mediterranean): changes in fish assemblages within four years of protection, ICES Journal of Marine Science, vol.37, issue.4, pp.180-187, 2009.
DOI : 10.1093/icesjms/fsn196

Y. Simard, N. Roy, C. Gervaise, and S. Giard, Analysis and modeling of 255 source levels of merchant ships from an acoustic observatory along St. Lawrence Seaway, The Journal of the Acoustical Society of America, vol.140, issue.3, pp.2002-20184962557, 2016.
DOI : 10.1121/1.4962557

URL : https://hal.archives-ouvertes.fr/hal-01447559

S. Simpson, M. Meekan, J. Montgomery, R. Mccauley, and A. Jeffs, Homeward Sound, Science, vol.308, issue.5719, p.1107406, 2005.
DOI : 10.1126/science.1107406

J. Stanley, C. Radford, and A. Jeffs, Location, location, location: finding a suitable home among the noise, Proceedings of the Royal Society B: Biological Sciences, vol.276, issue.10, pp.3622-36310697, 2012.
DOI : 10.3354/meps276263

J. Sueur, A. Farina, S. Pavoine, O. Hamerlynck, and S. Duvail, Ecoacoustics: the ecological investigation and interpretation of environmental sound Rapid acoustic survey for biodiversity appraisal, Biosemiotics PLOS ONE, vol.8, issue.3, pp.493-502, 2008.

J. Sueur, A. Farina, A. Gasc, N. Pieretti, and S. Pavoine, Acoustic Indices for Biodiversity Assessment and Landscape Investigation, Acta Acustica united with Acustica, vol.100, issue.4, pp.772-781, 2014.
DOI : 10.3813/AAA.918757

A. Terlizzi, M. Anderson, S. Fraschetti, and L. Benedetti-cecchi, Scales of spatial variation in Mediterranean subtidal sessile assemblages at different depths, Marine Ecology Progress Series, vol.332, pp.25-39, 2007.
DOI : 10.3354/meps332025

N. Tolimieri, A. Jeffs, and J. Montgomery, Ambient sound as a cue for navigation by the pelagic larvae of reef fishes, Marine Ecology Progress Series, vol.207, pp.219-224, 2000.
DOI : 10.3354/meps207219

R. Urick, M. Versluis, B. Schmitz, V. Der-heydt, A. Lohse et al., Principles of underwater sound for engineers How snapping shrimp snap: through cavitating bubbles, Science, vol.289, pp.2114-21172114, 1967.

M. Watanabe, M. Sekine, E. Hamada, M. Ukita, and T. Imai, Monitoring of shallow sea environment by using snapping shrimps, Water Sci Technol, vol.46, pp.419-424, 2002.

G. Wenz, Acoustic Ambient Noise in the Ocean: Spectra and Sources, The Journal of the Acoustical Society of America, vol.34, issue.12, pp.1936-1956, 1962.
DOI : 10.1121/1.1909155

H. Zenil, V. Encomio, and R. Gilmore, Passive acoustics as a monitoring tool for evaluating oyster reef restoration., The Journal of the Acoustical Society of America, vol.129, issue.4, pp.2698-2708, 2011.
DOI : 10.1121/1.3589054

F. Miami, USA Proofs received from author(s), 2017.

F. Bertucci, E. Parmentier, L. Berten, R. Brooker, and D. Lecchini, Temporal and Spatial Comparisons of Underwater Sound Signatures of Different Reef Habitats in Moorea Island, French Polynesia, PLOS ONE, vol.1, issue.9, p.135733, 2015.
DOI : 10.1371/journal.pone.0135733.t001

URL : https://hal.archives-ouvertes.fr/hal-01211705

F. Bertucci, E. Parmentier, G. Lecellier, A. Hawkins, and D. Lecchini, Acoustic indices provide information on the status of coral reefs: an example from Moorea Island in the South Pacific, Scientific Reports, vol.18, issue.1, p.33326, 2016.
DOI : 10.1080/09524622.2008.9753600

URL : https://hal.archives-ouvertes.fr/hal-01370610

J. Butler, J. Stanley, M. Butler, and . Iv, Underwater soundscapes in near-shore tropical habitats and the effects of environmental degradation and habitat restoration, Journal of Experimental Marine Biology and Ecology, vol.479, pp.89-96, 2016.
DOI : 10.1016/j.jembe.2016.03.006

S. Harris, N. Shears, and C. Radford, Ecoacoustic indices as proxies for biodiversity on temperate reefs, Methods in Ecology and Evolution, vol.59, issue.6, pp.713-724, 2016.
DOI : 10.1111/j.1095-8649.2001.tb00202.x

C. Huijbers, I. Nagelkerken, P. Lössbroek, I. Schulten, A. Siegenthaler et al., A test of the senses: Fish select novel habitats by responding to multiple cues, Ecology, vol.93, issue.1, pp.46-55, 2012.
DOI : 10.1007/s00338-009-0572-y

M. Kaplan, T. Mooney, J. Partan, and A. Solow, Coral reef species assemblages are associated with ambient soundscapes, Marine Ecology Progress Series, vol.533, pp.93-107, 2015.
DOI : 10.3354/meps11382

URL : http://darchive.mblwhoilibrary.org/bitstream/1912/7527/1/Kaplan%20et%20al%20MEPS%20manuscript%20revised_with-figures_FINAL_CLEAN.pdf

E. Kennedy, M. Holderied, J. Mair, H. Guzman, and S. Simpson, Spatial patterns in reef-generated noise relate to habitats and communities: Evidence from a Panamanian case study, Journal of Experimental Marine Biology and Ecology, vol.395, issue.1-2, pp.85-92, 2010.
DOI : 10.1016/j.jembe.2010.08.017

A. Lillis, D. Eggleston, and D. Bohnenstiehl, Estuarine soundscapes: distinct acoustic characteristics of oyster reefs compared to soft-bottom habitats, Marine Ecology Progress Series, vol.505, pp.1-17, 2014.
DOI : 10.3354/meps10805

J. Mcwilliam and A. Hawkins, A comparison of inshore marine soundscapes, Journal of Experimental Marine Biology and Ecology, vol.446, pp.166-176, 2013.
DOI : 10.1016/j.jembe.2013.05.012

J. Piercy, E. Codling, A. Hill, D. Smith, and S. Simpson, Habitat quality affects sound production and likely distance of detection on coral reefs, Marine Ecology Progress Series, vol.516, pp.35-47, 2014.
DOI : 10.3354/meps10986

C. Radford, J. Stanley, C. Tindle, J. Montgomery, and A. Jeffs, Localised coastal habitats have distinct underwater sound signatures, Marine Ecology Progress Series, vol.401, pp.21-29, 2010.
DOI : 10.3354/meps08451

URL : http://www.int-res.com/articles/meps2009/401/m401p021.pdf

S. Ricci, D. Eggleston, D. Bohnenstiehl, and A. Lillis, Temporal soundscape patterns and processes in an estuarine reserve, Marine Ecology Progress Series, vol.550, pp.25-38, 2016.
DOI : 10.3354/meps11724

T. Rossi, I. Nagelkerken, J. Pistevos, and S. Connell, Lost at sea: ocean acidification undermines larval fish orientation via altered hearing and marine soundscape modification, Biology Letters, vol.24, issue.1, p.20150937, 2016.
DOI : 10.1098/rspb.2015.1954

URL : http://rsbl.royalsocietypublishing.org/content/roybiolett/12/1/20150937.full.pdf

T. Rossi, S. Connell, and I. Nagelkerken, Silent oceans: ocean acidification impoverishes natural soundscapes by altering sound production of the world's noisiest marine invertebrate, Proceedings of the Royal Society B: Biological Sciences, vol.281, issue.1826, p.20153046, 2016.
DOI : 10.1111/gcb.13167

E. Staaterman, A. Rice, D. Mann, and C. Paris, Soundscapes from a Tropical Eastern Pacific reef and a Caribbean Sea reef, Coral Reefs, vol.308, issue.2, pp.553-557, 2013.
DOI : 10.1126/science.1107406