Interplay between isolation by distance and genetic clusters in the red coral Corallium rubrum: insights from simulated and empirical data, Conservation Genetics, vol.61, issue.5, pp.705-716, 2013. ,
DOI : 10.1093/sysbio/sys048
Mediterranean Coralligenous Assemblages, Proceedings of the National Academy of Sciences of the United States of America, pp.123-195, 2006. ,
DOI : 10.1201/9781420006391.ch4
Evolving coral reef conservation with genetic information, Bulletin of Marine Science, vol.90, issue.1, pp.159-185, 2014. ,
DOI : 10.5343/bms.2012.1106
A Connectivity-Based Eco-Regionalization Method of the Mediterranean Sea, PLoS ONE, vol.23, issue.7, 2014. ,
DOI : 10.1371/journal.pone.0111978.s002
URL : https://hal.archives-ouvertes.fr/hal-01242826
Marine Biodiversity of the Mediterranean Sea: Situation, Problems and Prospects for Future Research, Marine Pollution Bulletin, vol.40, issue.5, pp.367-37600027, 2000. ,
DOI : 10.1016/S0025-326X(00)00027-8
Contrasting population genetic structures in Amphipholis squamata, a complex of brooding, self-reproducing sister species sharing life history traits, Marine Ecology Progress Series, vol.539, pp.165-177, 2015. ,
DOI : 10.3354/meps11480
URL : https://hal.archives-ouvertes.fr/hal-01238310
(Ophiuroidea), Molecular Ecology, vol.32, issue.1, pp.1732-1744, 2008. ,
DOI : 10.1111/j.0014-3820.2002.tb00121.x
URL : https://hal.archives-ouvertes.fr/hal-01631358
Did vicariance and adaptation drive cryptic speciation and evolution of brooding in Ophioderma longicauda, a common Atlanto-Mediterranean ophiuroid? Molecular Ecology, pp.4737-4755, 2011. ,
Infraspecific zoogeography of the Mediterranean: Population genetic analysis on sixteen Atlanto-Mediterranean species (fishes and invertebrates), Vie et Milieu, vol.47, pp.295-305, 1997. ,
Genetic differentiation and reduced genetic diversity at the northern range edge of two species with different dispersal modes, Molecular Ecology, vol.55, issue.2, pp.515-526, 2016. ,
DOI : 10.1111/j.0014-3820.2001.tb00760.x
URL : https://hal.archives-ouvertes.fr/hal-01473817
Genetic structure in native and non-native populations of the direct-developing gastropod Crepidula convexa, Marine Biology, vol.16, issue.S2, pp.2433-2443, 2014. ,
DOI : 10.3354/meps289109
URL : https://hal.archives-ouvertes.fr/hal-01218818
Evaluation of the utility of COI and ITS markers as tools for population genetic studies of temperate gorgonians, Journal of Experimental Marine Biology and Ecology, vol.336, issue.2, pp.184-197, 2006. ,
DOI : 10.1016/j.jembe.2006.05.006
Forte diff??renciation g??n??tique de la daurade Sparus aurata (L., 1758) entre les deux rives de la M??diterran??e occidentale, Comptes Rendus Biologies, vol.332, issue.4, pp.329-335, 2009. ,
DOI : 10.1016/j.crvi.2008.11.002
Population genetics and the sixth extinction threat on marine species, CIESM workshop monograph n°45. Marine extinctions -patterns and processes, pp.45-52, 2012. ,
Dispersal similarly shapes both population genetics and community patterns in the marine realm, Scientific Reports, vol.22, issue.100, 2016. ,
DOI : 10.1002/sim.1545
URL : https://hal.archives-ouvertes.fr/hal-01444635
Larval Dispersal and Marine Population Connectivity, Annual Review of Marine Science, vol.1, issue.1, pp.443-466, 2009. ,
DOI : 10.1146/annurev.marine.010908.163757
Coalescent and biophysical models of stepping-stone gene flow in neritid snails, Molecular Ecology, vol.28, issue.22, pp.5579-5598, 2012. ,
DOI : 10.2307/2410923
Shared phylogeographical breaks in a Caribbean coral reef sponge and its invertebrate commensals, Journal of Biogeography, vol.56, issue.11, pp.2136-2146, 2016. ,
DOI : 10.1016/j.ympev.2010.03.030
A rapid photographic method detects depth gradient in coralligenous assemblages, Journal of Experimental Marine Biology and Ecology, vol.418, issue.419, pp.418-419, 2012. ,
DOI : 10.1016/j.jembe.2012.03.006
Mapping biodiversity in three-dimensions challenges marine conservation strategies: The example of coralligenous assemblages in North-Western Mediterranean Sea, Ecological Indicators, vol.61, pp.1042-1054, 2015. ,
DOI : 10.1016/j.ecolind.2015.10.062
URL : https://hal.archives-ouvertes.fr/hal-01444069
Comparative Phylogeography in Fijian Coral Reef Fishes: A Multi-Taxa Approach towards Marine Reserve Design, PLoS ONE, vol.398, issue.10, 2012. ,
DOI : 10.1371/journal.pone.0047710.s001
Population connectivity measures of fishery-targeted coral reef species to inform marine reserve network design in Fiji Scientific Reports Morphological and genetic analyses reveal a cryptic species complex in the echinoid Echinocardium cordatum and rule out a stabilizing selection explanation, Molecular Phylogenetics and Evolution, vol.6, issue.94, pp.207-220, 2016. ,
Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows, Molecular Ecology Resources, vol.127, issue.3, pp.564-567, 2010. ,
DOI : 10.1111/j.1755-0998.2010.02847.x
Theoretical limits to the correlation between pelagic larval duration and population genetic structure, Molecular Ecology, vol.16, issue.14, pp.3419-3432, 2012. ,
DOI : 10.1038/sj.hdy.6884960
(Bryozoa, Cheilostomatida), Italian Journal of Zoology, vol.84, issue.4, pp.341-350, 2007. ,
DOI : 10.1002/jmor.1051990203
Are the Mediterranean waters becoming warmer? Information from biological indicators, Marine Pollution Bulletin, vol.28, issue.9, pp.523-526, 1994. ,
DOI : 10.1016/0025-326X(94)90071-X
Coralligenous reefs state along anthropized coasts: Application and validation of the COARSE index, based on a rapid visual assessment (RVA) approach, Ecological Indicators, vol.52, pp.567-576, 2015. ,
DOI : 10.1016/j.ecolind.2014.12.026
Seafloor integrity down the harbor waterfront: The coralligenous shoals off Valdo Ligure (NW Mediterranean ) Advances in Oceanography and Limnology, pp.51-67, 2012. ,
Phylogeographic Structure in Benthic Marine Invertebrates of the Southeast Pacific Coast of Chile with Differing Dispersal Potential, PLoS ONE, vol.20, issue.2, 2014. ,
DOI : 10.1371/journal.pone.0088613.t007
The application of genetics to marine management and conservation: examples from the Indo-Pacific, Bulletin of Marine Science, vol.90, issue.1, pp.123-158, 2014. ,
DOI : 10.5343/bms.2012.1079
Ecological consequences of genetic diversity, Ecology Letters, vol.406, issue.6, pp.609-623, 2008. ,
DOI : 10.1111/j.0014-3820.2006.tb01177.x
Genetic diversity enhances the resistance of a seagrass ecosystem to disturbance, Proceedings of the National Academy of Sciences, vol.9, issue.4, pp.8998-9002, 2004. ,
DOI : 10.1046/j.1526-100x.2001.009003332.x
adegenet: a R package for the multivariate analysis of genetic markers, Bioinformatics, vol.3, issue.11, pp.1403-1405, 2008. ,
DOI : 10.1093/oxfordjournals.jhered.a111573
URL : https://hal.archives-ouvertes.fr/hal-00428105
and its relatives do not measure differentiation, Molecular Ecology, vol.15, issue.18, pp.4015-4026, 2008. ,
DOI : 10.1111/j.1469-1809.1949.tb02451.x
Genetic Structure Among 50 Species of the Northeastern Pacific Rocky Intertidal Community, PLoS ONE, vol.125, issue.1, p.8594, 2010. ,
DOI : 10.1371/journal.pone.0008594.s001
Variation in habitat connectivity generates positive correlations between species and genetic diversity in a metacommunity, Molecular Ecology, vol.193, issue.17, pp.4445-4456, 2013. ,
DOI : 10.1111/j.1469-8137.2011.03957.x
(Linnaeus, 1758)]: new insights into evolutionary processes shaping nuclear diversity and implications for conservation, Molecular Ecology, vol.11, issue.Suppl. 1, pp.675-690, 2010. ,
DOI : 10.2307/2408641
Spatial and temporal population genetic structure of four northeastern Pacific littorinid gastropods: the effect of mode of larval development on variation at one mitochondrial and two nuclear DNA markers, Molecular Ecology, vol.41, issue.10, pp.2165-2184, 2009. ,
DOI : 10.1093/oxfordjournals.molbev.a004024
Brooding crustaceans in a highly fragmented habitat: the genetic structure of Mediterranean marine cave-dwelling mysid populations, Molecular Ecology, vol.74, issue.41, pp.4123-4140, 2006. ,
DOI : 10.1086/280891
Climate change effects on a miniature ocean: The highly diverse, highly impacted Mediterranean Sea. Trends in Ecology and Evolution, pp.250-260, 2010. ,
URL : https://hal.archives-ouvertes.fr/hal-00618668
Seascape features, rather than dispersal traits, predict spatial genetic patterns in co-distributed reef fishes, Journal of Biogeography, vol.393, issue.2, pp.256-267, 2016. ,
DOI : 10.3354/meps08287
What Controls Connectivity? An Empirical, Multi-Species Approach, Integrative and Comparative Biology, vol.73, issue.1688, pp.511-524, 2012. ,
DOI : 10.1890/01-4073
Geographic Patterns of (Genetic, Morphologic, Linguistic) Variation: How Barriers Can Be Detected by Using Monmonier's Algorithm, Human Biology, vol.76, issue.2, pp.173-1900034, 2004. ,
DOI : 10.1353/hub.2004.0034
Footprints of climate change on Mediterranean Sea biota, Frontiers in Marine Science, p.56, 2015. ,
DOI : 10.1016/j.gloplacha.2007.09.001
Coralligenous and ma??rl habitats: predictive modelling to identify their spatial distributions across the Mediterranean Sea, Scientific Reports, vol.25, issue.1, p.5073, 2014. ,
DOI : 10.1002/joc.1173
Contrasted levels of genetic diversity in a benthic Mediterranean octocoral: Consequences of different demographic histories?, Ecology and Evolution, vol.38, issue.1, pp.8665-8678, 2016. ,
DOI : 10.1007/BF00390729
URL : https://hal.archives-ouvertes.fr/hal-01473795
CONCORDANCE BETWEEN GENETIC AND SPECIES DIVERSITY IN CORAL REEF FISHES ACROSS THE PACIFIC OCEAN BIODIVERSITY GRADIENT, Evolution, vol.74, issue.12, pp.3902-3917, 2012. ,
DOI : 10.1086/280891
From global to local genetic structuring in the red gorgonian Paramuricea clavata: the interplay between oceanographic conditions and limited larval dispersal, Molecular Ecology, vol.11, issue.16, pp.3291-3305, 2011. ,
DOI : 10.1890/1051-0761(2001)011[1472:RGDIET]2.0.CO;2
Maximum-Difference Barriers: An Alternative Numerical Regionalization Method*, Geographical Analysis, vol.58, issue.3, pp.245-261, 1973. ,
DOI : 10.1111/j.1538-4632.1969.tb00614.x
Marine reserves help preserve genetic diversity after impacts derived from climate variability: Lessons from the pink abalone in Baja California, Global Ecology and Conservation, vol.4, pp.264-276, 2015. ,
DOI : 10.1016/j.gecco.2015.07.005
Multispecies genetic objectives in spatial conservation planning, Conservation Biology, vol.21, issue.4, pp.872-882, 2017. ,
DOI : 10.1111/ddi.12302
URL : https://doi.org/10.1111/cobi.12875
Potential vs. realized larval dispersal: fish predation on larvae of the ascidian Lissoclinum patella (Gottschaldt), Journal of Experimental Marine Biology and Ecology, vol.110, issue.3, pp.245-2560022, 1987. ,
DOI : 10.1016/0022-0981(87)90004-9
Temporal variation of genetic composition in Atlantic salmon populations from the Western White Sea Basin: influence of anthropogenic factors?, BMC Genetics, vol.14, issue.1, pp.1471-2156, 2013. ,
DOI : 10.1111/j.1471-8286.2005.01155.x
POPULATION GENETICS, DEMOGRAPHIC CONNECTIVITY, AND THE DESIGN OF MARINE RESERVES, Ecological Applications, vol.13, issue.sp1, pp.146-158, 2003. ,
DOI : 10.1890/1051-0761(2003)013[0146:PGDCAT]2.0.CO;2
Impact of life history traits on gene flow: A multispecies systematic review across oceanographic barriers in the Mediterranean Sea, PLOS ONE, vol.26, issue.S2, 2017. ,
DOI : 10.1371/journal.pone.0176419.s004
genalex 6: genetic analysis in Excel. Population genetic software for teaching and research, Molecular Ecology Notes, vol.35, issue.1, pp.288-295, 2006. ,
DOI : 10.1046/j.1365-2540.1999.00518.x
GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research--an update, Bioinformatics, vol.20, issue.6, pp.2537-2539, 2012. ,
DOI : 10.1111/j.1365-294X.2010.04996.x
Planktonic larvae do not ensure gene flow in the edible sea urchin Paracentrotus lividus??, Marine Ecology Progress Series, vol.480, pp.155-170, 2013. ,
DOI : 10.3354/meps10194
URL : https://hal.archives-ouvertes.fr/hal-01631351
Identifying Populations for Conservation on the Basis of Genetic Markers, Conservation Biology, vol.163, issue.1, pp.844-855, 1998. ,
DOI : 10.1016/0006-3207(91)90030-D
Genetic diversity loss associated to high mortality and environmental stress during the recruitment stage of a coral reef fish, Coral Reefs, vol.213, issue.2, pp.399-404, 2011. ,
DOI : 10.1242/jeb.037895
URL : https://hal.archives-ouvertes.fr/hal-00655363
Meta-analysis reveals lower genetic diversity in overfished populations, Molecular Ecology, vol.129, issue.1, pp.29-39, 2014. ,
DOI : 10.1007/978-0-387-87458-6
Population Genetic Diversity in the Australian ???Seascape???: A Bioregion Approach, PLOS ONE, vol.7, issue.9, 2015. ,
DOI : 10.1371/journal.pone.0136275.s007
Spatial Heterogeneity of Artificial Reefs Functioning according to Wind-Induced Lagrangian Circulation, ISRN Oceanography, vol.260, p.568487, 2013. ,
DOI : 10.1016/j.jmarsys.2011.02.010
URL : https://hal.archives-ouvertes.fr/hal-00790444
R: A language and environment for statistical computing . Vienna, Austria: R Foundation for Statistical Computing, 2015. ,
Cryptic habitats and cryptic diversity: unexpected patterns of connectivity and phylogeographical breaks in a Mediterranean endemic marine cave mysid, Molecular Ecology, vol.42, issue.11, pp.2825-2843, 2014. ,
DOI : 10.1016/j.ympev.2006.07.009
URL : https://hal.archives-ouvertes.fr/hal-00996579
Correlation between Fitness and Genetic Diversity, Conservation Biology, vol.70, issue.1, pp.230-237, 2003. ,
DOI : 10.1006/bijl.1993.1053
Ecosystem recovery after climatic extremes enhanced by genotypic diversity, Proceedings of the National Academy of Sciences of the United States of America, pp.2826-2831, 2005. ,
DOI : 10.1073/pnas.091092498
URL : http://www.pnas.org/content/102/8/2826.full.pdf
Effects of geography and life history traits on genetic differentiation in benthic marine fishes, Ecography, vol.277, issue.4, pp.566-575, 2011. ,
DOI : 10.1098/rspb.2009.2214
Quantitative criteria for choosing targets and indicators for sustainable use of ecosystems, Ecological Indicators, vol.72, pp.215-224, 2017. ,
DOI : 10.1016/j.ecolind.2016.08.005
URL : https://hal.archives-ouvertes.fr/hal-01631349
genepop???007: a complete re-implementation of the genepop software for Windows and Linux, Seascape connectivity of the Mediterranean shore crab in the Adriatic Sea, pp.103-106, 2008. ,
DOI : 10.2307/2408641
URL : https://hal.archives-ouvertes.fr/halsde-00366752
A decade of seascape genetics: contributions to basic and applied marine connectivity, Marine Ecology Progress Series, vol.554, pp.1-9, 2016. ,
DOI : 10.3354/meps11792
Emergent patterns of population genetic structure for a coral reef community, Molecular Ecology, vol.67, issue.12, pp.3064-3079, 2014. ,
DOI : 10.1111/evo.12111
Marine connectivity: a new look at pelagic larval duration and genetic metrics of dispersal, Marine Ecology Progress Series, vol.436, pp.291-305, 2011. ,
DOI : 10.3354/meps09238
Propagule dispersal distance and the size and shaping of marine reserves, Ecological Applications, vol.132, pp.159-1691051, 2003. ,
The stochastic nature of larval connectivity among nearshore marine populations, Proceedings of the National Academy of Sciences, vol.105, issue.26, pp.8974-8979, 2008. ,
DOI : 10.2307/2937096
Phenotypic and genetic consequences of size selection at the larval stage in the Pacific oyster (Crassostrea gigas), Journal of Experimental Marine Biology and Ecology, vol.333, issue.1, pp.147-158, 2006. ,
DOI : 10.1016/j.jembe.2005.12.007
within the Bay of Marseille (Mediterranean Sea): Genetic Structure and Hydrodynamic Connections, Cryptogamie, Algologie, vol.37, issue.4, pp.233-255, 2016. ,
DOI : 10.7872/crya/v37.iss4.2016.233.s2
URL : https://hal.archives-ouvertes.fr/hal-01409656
Island Biogeography of Genes and Species, The American Naturalist, vol.162, issue.3, pp.358-365, 2003. ,
DOI : 10.1086/377189
Conceptual Synthesis in Community Ecology, The Quarterly Review of Biology, vol.85, issue.2, pp.183-206, 2010. ,
DOI : 10.1086/652373
Connections between species diversity and genetic diversity, Ecology Letters, vol.84, issue.7, pp.767-781, 2005. ,
DOI : 10.1046/j.0305-0270.2003.00994.x
URL : http://onlinelibrary.wiley.com/doi/10.1111/j.1461-0248.2005.00775.x/pdf
Drawing ecological inferences from coincident patterns of population- and community-level biodiversity, Molecular Ecology, vol.428, issue.12, pp.2890-2901, 2014. ,
DOI : 10.1038/nature02403
Genetic Structuring across Marine Biogeographic Boundaries in Rocky Shore Invertebrates, PLoS ONE, vol.118, issue.7, 2014. ,
DOI : 10.1371/journal.pone.0101135.s006
Positive selection on sperm ion channels in a brooding brittle star: consequence of life-history traits evolution, Molecular Ecology, vol.17, issue.14, pp.3744-3759, 2017. ,
DOI : 10.1093/oxfordjournals.molbev.a026236
URL : https://hal.archives-ouvertes.fr/hal-01573765
species complex, Molecular Ecology, vol.393, issue.24, pp.6080-6094, 2015. ,
DOI : 10.3354/meps08287
URL : https://hal.archives-ouvertes.fr/hal-01631352
Population genetics, larval dispersal, and connectivity in marine systems, Marine Ecology Progress Series, vol.393, pp.1-12, 2009. ,
DOI : 10.3354/meps08287
URL : http://www.int-res.com/articles/feature/m393p001.pdf
Genetic isolation by distance reveals restricted dispersal across a range of life histories: implications for biodiversity conservation planning across highly variable marine environments, Diversity and Distributions, vol.28, issue.6, pp.698-710, 2015. ,
DOI : 10.3354/meps08287
A multispecies approach reveals hot spots and cold spots of diversity and connectivity in invertebrate species with contrasting dispersal modes, Molecular Ecology, vol.21, issue.419, pp.6563-6577, 2017. ,
DOI : 10.1111/ddi.12302
URL : https://hal.archives-ouvertes.fr/hal-01681650