De Novo NGS Data Compression

Gaëtan Benoit 1 Claire Lemaitre 1 Guillaume Rizk 1 Erwan Drezen 1 Dominique Lavenier 1
1 GenScale - Scalable, Optimized and Parallel Algorithms for Genomics
Inria Rennes – Bretagne Atlantique , IRISA-D7 - GESTION DES DONNÉES ET DE LA CONNAISSANCE
Abstract : This chapter deals with the compression of genomic data without reference genomes. It presents various techniques which have been specifically developed to compress sequencing data in lossless or lossy modes. The chapter also provides an evaluation of different NGS data compressor tools.
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Gaëtan Benoit, Claire Lemaitre, Guillaume Rizk, Erwan Drezen, Dominique Lavenier. De Novo NGS Data Compression. Mourad Elloumi. Algorithms for Next-Generation Sequencing Data, Springer, pp.91-115, 2017, 978-3-319-59826-0. ⟨10.1007/978-3-319-59826-0_4⟩. ⟨hal-01633718⟩

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