P. Kirk, P. Cannon, D. Minter, and J. Stalpers, Dictionary of the Fungi CABI, 2008.

C. Schoch, P. Crous, J. Groenewald, E. Boehm, T. Burgess et al., A class-wide phylogenetic assessment of Dothideomycetes, Studies in Mycology, vol.64, pp.1-15, 2009.
DOI : 10.3114/sim.2009.64.01

R. Ohm, N. Feau, B. Henrissat, C. Schoch, B. Horwitz et al., Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi, Book of Abstracts 27 th Fungal Genetics Conference. Asilomar, 2013.
DOI : 10.1371/journal.ppat.1003037.s042

S. Wikee, D. Udayanga, P. Crous, E. Chukeatirote, E. Mckenzie et al., Phyllosticta???an overview of current status of species recognition, Fungal Diversity, vol.16, issue.3, pp.43-61, 2011.
DOI : 10.1071/APP9870059

S. Wikee, L. Lombard, P. Crous, C. Nakashima, K. Motohashi et al., Phyllosticta capitalensis, a widespread endophyte of plants, Fungal Diversity, vol.27, issue.4, pp.91-105, 2013.
DOI : 10.1007/s11274-010-0480-x

S. Wikee, L. Lombard, C. Nakashima, K. Motohashi, E. Chukeatirote et al., A phylogenetic re-evaluation of Phyllosticta (Botryosphaeriales), Studies in Mycology, vol.76, pp.1-29, 2013.
DOI : 10.3114/sim0019

D. Manamgoda, L. Cai, E. Mckenzie, P. Crous, H. Madrid et al., A phylogenetic and taxonomic re-evaluation of the Bipolaris - Cochliobolus - Curvularia Complex, Fungal Diversity, vol.53, issue.11, pp.131-144, 2012.
DOI : 10.1007/s13225-011-0117-x

M. Muria-gonzalez, Y. Chooi, S. Breen, and P. Solomon, The past, present and future of secondary metabolite research in the Dothideomycetes, Molecular Plant Pathology, vol.44, issue.1, pp.92-107, 2015.
DOI : 10.1016/j.fgb.2007.06.005

G. Strobel, Endophytes as sources of bioactive products, Microbes and Infection, vol.5, issue.6, pp.535-544, 2003.
DOI : 10.1016/S1286-4579(03)00073-X

G. Verkley, P. Crous, J. Groenewald, U. Braun, and A. Aptroot, Mycosphaerella punctiformis revisited: morphology, phylogeny, and epitypification of the type species of the genus Mycosphaerella (Dothideales, Ascomycota), Mycological Research, vol.108, issue.11, pp.1271-1282, 2004.
DOI : 10.1017/S0953756204001054

U. Damm, G. Verkley, P. Crous, P. Fourie, A. Haegi et al., Novel Paraconiothyrium species on stone fruit trees and other woody hosts. Persoonia-Molecular Phylogeny and Evolution of Fungi, pp.9-17, 2008.

S. Sunkar and V. Nachiyar, Endophytes as potential nanofactories, Int J Chem, Environ Biological Sci, vol.1, pp.488-491, 2013.

L. Zifcakova, P. Dobiasova, Z. Kolarova, O. Koukol, and P. Baldrian, Enzyme activities of fungi associated with Picea abies needles, Fungal Ecology, vol.4, issue.6, pp.427-436, 2011.
DOI : 10.1016/j.funeco.2011.04.002

B. Wicht, O. Petrini, M. Jermini, C. Gessler, and G. Broggini, Molecular, proteomic and morphological characterization of the ascomycete Guignardia bidwellii, agent of grape black rot: a polyphasic approach to fungal identification, Mycologia, vol.104, issue.5
DOI : 10.3852/11-242

M. Wong, P. Crous, J. Henderson, J. Groenewald, and A. Drenth, Phyllosticta species associated with freckle disease of banana, Fungal Diversity, vol.88, issue.4, pp.173-187, 2012.
DOI : 10.1007/s13225-011-0146-5

G. Stammler, G. Schutte, J. Speakman, S. Miessner, and P. Crous, Phyllosticta species on citrus: Risk estimation of resistance to QoI fungicides and identification of species with cytochrome b gene sequences, Crop Protection, vol.48, pp.6-12, 2013.
DOI : 10.1016/j.cropro.2013.02.001

M. Zavala, H. Er, E. Goss, N. Wang, M. Dewdney et al., Genetic variation among Phyllosticta strains isolated from citrus in Florida that are pathogenic or nonpathogenic to citrus, Tropical Plant Pathology, vol.39, issue.2, pp.119-128, 2014.
DOI : 10.1590/S1982-56762014000200002

V. Van-der-aa, A. Aptroot, R. Summerbell, and G. Verkley, A revision of the species described in Phyllosticta, Centraalbureauvo or Schimmelcultures, 2002.

A. Evidente, A. Cimmino, A. Andolfi, M. Vurro, M. Zonno et al., Phyllostictines A???D, oxazatricycloalkenones produced by Phyllosticta cirsii, a potential mycoherbicide for Cirsium arvense biocontrol, Tetrahedron, vol.64, issue.8, pp.1612-1619, 2008.
DOI : 10.1016/j.tet.2007.12.010

U. Sommart, V. Rukachaisirkul, K. Trisuwan, K. Tadpetch, S. Phongpaichit et al., Tricycloalternarene derivatives from the endophytic fungus Guignardia bidwellii PSU-G11, Phytochemistry Letters, vol.5, issue.1, pp.139-143, 2012.
DOI : 10.1016/j.phytol.2011.11.010

I. Buckel, D. Molitor, J. Liermann, L. Sandjo, B. Berkelmann-löhnertz et al., Phytotoxic dioxolanone-type secondary metabolites from Guignardia bidwellii, Phytochemistry, vol.89, pp.96-103, 2013.
DOI : 10.1016/j.phytochem.2013.01.004

S. Wikee, P. Jaidee, S. Wongkam, E. Mckenzie, K. Hyde et al., spp., Mycology: An International Journal on Fungal Biology, vol.2, issue.2, pp.112-117, 2013.
DOI : 10.1007/s13225-012-0182-9

E. Chukeatirote, S. Wikee, and K. Hyde, Diversity and antibacterial activity of Phyllosticta species. MicologíaAplicada International, pp.1-9, 2015.

A. Esteves, M. Saraiva, A. Correia, and A. Alves, Botryosphaeriales fungi produce extracellular enzymes with biotechnological potential, Canadian Journal of Microbiology, vol.60, issue.5, pp.332-342, 2014.
DOI : 10.1139/cjm-2014-0134

O. Connell, R. Thon, M. Hacquard, S. Amyitte, S. Kleemann et al., Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses, Nature Genetics, vol.2, issue.9, pp.1060-1067, 2012.
DOI : 10.1007/s00438-010-0572-1

URL : https://hal.archives-ouvertes.fr/hal-01191183

Z. Zhao, H. Liu, C. Wang, and J. Xu, Comparative analysis of fungal genomes reveals different plant cell wall degrading capacity in fungi, BMC genomics, vol.14, 2013.

M. Islam, M. Haque, M. Islam, E. Emdad, A. Halim et al., Tools to kill: Genome of one of the most destructive plant pathogenic fungi Macrophomina phaseolina, BMC Genomics, vol.13, issue.1, 2012.
DOI : 10.1023/A:1008983616033

R. Dean, N. Talbot, D. Ebbole, M. Farman, T. Mitchell et al., The genome sequence of the rice blast fungus Magnaporthe grisea, Nature, vol.9, issue.7036, pp.980-986, 2005.
DOI : 10.1093/nar/29.20.4106

K. Pham, H. Nguyen, T. Murai, I. Chuma, Y. Tosa et al., Histone H3K4 methyltransferase globally regulates substrate-dependent activation of cell-wall-degrading enzymes in Magnaporthe oryzae, Journal of General Plant Pathology, vol.104, issue.2, pp.127-1230, 2015.
DOI : 10.1104/pp.104.4.1113

L. Taniguti, P. Schaker, J. Benevenuto, L. Peters, G. Carvalho et al., Complete Genome Sequence of Sporisorium scitamineum and Biotrophic Interaction Transcriptome with Sugarcane, PLOS ONE, vol.14, issue.4, 2015.
DOI : 10.1371/journal.pone.0129318.s008

M. Couturier, D. Navarro, C. Olive, D. Chevret, M. Haon et al., Postgenomic analysis of fungal lignocellulosic biomass degradation reveal the unexpected potential of the plant pathogen Ustilago maydis, BMC Genomics, vol.13, issue.57, 2012.

J. Hane, R. Lowe, P. Solomon, K. Tan, C. Schoch et al., Dothideomycete Plant Interactions Illuminated by Genome Sequencing and EST Analysis of the Wheat Pathogen Stagonospora nodorum, THE PLANT CELL ONLINE, vol.19, issue.11, pp.3347-3368, 2007.
DOI : 10.1105/tpc.107.052829

J. Berrin, D. Navarro, M. Couturier, C. Olivé, S. Grisel et al., Exploring natural fungal biodiversity from tropical and temperate forests to improve biomass conversion Applied and environmental microbiology, 2012.

C. Faulds, M. Pérez-boada, and Á. Martínez, Influence of organic co-solvents on the activity and substrate specificity of feruloyl esterases, Bioresource Technology, vol.102, issue.8, pp.4962-4967, 2011.
DOI : 10.1016/j.biortech.2011.01.088

I. Herpoël, S. Moukha, L. Lesage-meessen, J. Sigoillot, and M. Asther, Selection of Pycnoporus cinnabarinus strains for laccase production, FEMS Microbiology Letters, vol.183, issue.2, pp.301-306, 2000.
DOI : 10.1016/S0378-1097(99)00616-3

A. Husaini, F. Fisol, L. Yun, M. Hussain, and H. Roslan, Lignocellulolytic enzymes produced by tropical white rot fungi during biopulping of Acacia mangium wood chips, J Biochem Technol, vol.3, pp.245-250, 2011.

M. Tien and T. Kirk, Lignin-degrading enzyme from Phanerochaete chrysosporium: Purification, characterization, and catalytic properties of a unique H2O2-requiring oxygenase, Proceedings of the National Academy of Sciences, vol.81, issue.8, pp.2280-2284, 1984.
DOI : 10.1073/pnas.81.8.2280

B. Suresh and T. Viruthagiri, Optimization and kinectics of pectinase enzyme using Aspergillu sniger by solid-state fermentation, Indian Journal of Science and Technology, vol.3, pp.867-870, 2010.

N. Kruger, The Bradford method for protein quantitation. Basic protein and peptide protocols, pp.9-15, 1994.

G. Miller, Use of Dinitrosalicylic Acid Reagent for Determination of Reducing Sugar, Analytical Chemistry, vol.31, issue.3, pp.426-428, 1959.
DOI : 10.1021/ac60147a030

K. Kadoglidou, A. Lagopodi, K. Karamanoli, D. Vokou, G. Bardas et al., Inhibitory and stimulatory effects of essential oils and individual monoterpenoids on growth and sporulation of four soil-borne fungal isolates of Aspergillus terreus, Fusarium oxysporum, Penicillium expansum, and Verticillium dahliae, European Journal of Plant Pathology, vol.7, issue.9, pp.297-309, 2011.
DOI : 10.1089/10665270050081478

D. Wit, P. Van-der-burgt, A. Okmen, B. Stergiopoulos, I. Abd-elsalam et al., The genomes of the fungal plant pathogens Cladosporium fulvum and Dothistroma septosporum reveal adaption to different hosts and lifestyles but also signatures of common ancestry, PLOS One, vol.8, 2012.

A. Romao, M. Sposito, F. Andreote, J. Azevedo, and W. Araujo, Enzymatic differences between the endophyte Guignardia mangiferae (Botryosphaeriaceae) and the citrus pathogen G. citricarpa, Genetics and Molecular Research, vol.10, issue.1, pp.243-252, 2011.
DOI : 10.4238/vol10-1gmr952

R. Ohm, R. Riley, A. Salamov, M. B. Choi, I. Grigoriev et al., Genomics of wood-degrading fungi, Fungal Genetics and Biology, vol.72, pp.82-90, 2014.
DOI : 10.1016/j.fgb.2014.05.001

D. Martinez, L. Larrondo, N. Putnam, M. Gelpke, K. Huang et al., Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78, Nature Biotechnology, vol.148, issue.6, pp.695-700, 2004.
DOI : 10.1101/gr.122800

J. Van-kan, Licensed to kill: the lifestyle of a necrotrophic plant pathogen, Trends in Plant Science, vol.11, issue.5, pp.247-253, 2006.
DOI : 10.1016/j.tplants.2006.03.005

D. Eastwood, D. Floudas, M. Binder, A. Majcherczyk, and P. Schneider, The Plant Cell Wall-Decomposing Machinery Underlies the Functional Diversity of Forest Fungi, Science, vol.24, issue.2, pp.762-765, 2011.
DOI : 10.1039/b603084j

B. Shawky, M. Mahmoud, E. Ghazy, M. Asker, and G. Ibrahim, Enzymatic hydrolysis of rice straw and corn stalks for monosugars production, Journal of Genetic Engineering and Biotechnology, vol.9, issue.1, pp.59-63, 2011.
DOI : 10.1016/j.jgeb.2011.05.001

S. Wi, I. Choi, K. Kim, H. Kim, and H. Bae, Bioethanol production from rice straw by popping pretreatment, Biotechnology for Biofuels, vol.6, issue.1, p.166, 2013.
DOI : 10.1007/s10295-010-0751-4

L. Cuiping, W. Chuangzhi, and H. Haitao, Chemical elemental characteristics of biomass fuels in China, Biomass and Bioenergy, vol.27, issue.2, pp.119-130, 2004.
DOI : 10.1016/j.biombioe.2004.01.002

P. Ming-zhu, M. Chang-tong, Z. Xu-bing, and P. Yun-lei, Effects of rice straw fiber morphology and content on the mechanical and thermal properties of rice straw fiber-high density polyethylene composites, Journal of Applied Polymer Science, vol.23, issue.5, pp.2900-2907, 2011.
DOI : 10.1002/pc.10434

A. Boonmee, Hydrolysis of various thai agricultural biomasses using the crude enzyme from Aspergillus aculeatus iizuka FR60 isolated from soil, Brazilian Journal of Microbiology, vol.43, issue.2, pp.456-466, 2012.
DOI : 10.1590/S1517-83822012000200005

A. Zaid and O. Ganiyat, Comparative utilization of biodegraded and undegraded rice husk in Clariasgariepinus diet, African journal of Biotechnology, vol.8, pp.1358-1362, 2009.

A. Bledzki, A. Mamun, N. Bonnia, and S. Ahmad, Basic properties of grain by-products and their viability in polypropylene composites, Industrial Crops and Products, vol.37, issue.1, pp.427-434, 2012.
DOI : 10.1016/j.indcrop.2011.05.010

P. Adapa, L. Tabil, and G. Schoenau, Compaction characteristics of barley, canola, oat and wheat straw, Biosystems Engineering, vol.104, issue.3, pp.335-344, 2009.
DOI : 10.1016/j.biosystemseng.2009.06.022

D. Navarro, M. Couturier, G. Da-silva, J. Berrin, X. Rouau et al., Automated assay for screening the enzymatic release of reducing sugars from micronized biomass. Microbial cell factories, p.58, 2010.
URL : https://hal.archives-ouvertes.fr/hal-00939699

E. Hodgson, D. Nowakowski, I. Shield, A. Riche, A. Bridgwater et al., Variation in Miscanthus chemical composition and implications for conversion by pyrolysis and thermo-chemical bio-refining for fuels and chemicals, Bioresource Technology, vol.102, issue.3, pp.3411-3418, 2011.
DOI : 10.1016/j.biortech.2010.10.017

Z. Podkówka and L. Podkówka, Chemical composition and quality of sweet sorghum and maize silages, Journal of Central European Agriculture, vol.12, issue.2, 2011.
DOI : 10.5513/JCEA01/12.2.915

S. Serna-saldívar, C. Chuck-hernández, E. Heredia-olea, and E. Pérez-carrillo, Sorghum as a multifunctional crop for the production of fuel ethanol: Current status and future trends, 2012.

L. Lesage-meessen, M. Bou, J. Sigoillot, C. Faulds, and A. Lomascolo, Essential oils and distilled straws of lavender and lavandin: a review of current use and potential application in white biotechnology, Applied Microbiology and Biotechnology, vol.36, issue.103, pp.3375-3385, 2015.
DOI : 10.1016/j.indcrop.2011.09.010

URL : https://hal.archives-ouvertes.fr/hal-01269193

S. Wikee, P. Chumnunti, A. Kanghae, E. Chukeatirote, S. Lumyong et al., Lignocellulolytic Capability of Endophytic Phyllosticta sp, J Bacteriol Mycol, vol.4, issue.2, p.1047, 2017.
URL : https://hal.archives-ouvertes.fr/hal-01611437