Model checking to assess t-helper cell plasticity, Frontiers in Bioengineering and Biotechnology, vol.2, 2015. ,
DOI : 10.1101/012641
A survey of basic net models and modular net classes, Lecture Notes in Computer Science, vol.609, pp.304-351, 1992. ,
DOI : 10.1007/3-540-55610-9_177
Systematic Search for Recipes to Generate Induced Pluripotent Stem Cells, PLoS Computational Biology, vol.23, issue.12, p.1002300, 2011. ,
DOI : 10.1371/journal.pcbi.1002300.s004
URL : http://doi.org/10.1371/journal.pcbi.1002300
Petri net representation of multi-valued logical regulatory graphs, Natural Computing, vol.57, issue.2, pp.727-750, 2011. ,
DOI : 10.1007/BF02460618
Characterization of Reachable Attractors Using Petri Net Unfoldings, Computational Methods in Systems Biology, pp.129-142, 2014. ,
DOI : 10.1007/978-3-319-12982-2_10
URL : https://hal.archives-ouvertes.fr/hal-01060450
Mathematical Modelling of Molecular Pathways Enabling Tumour Cell Invasion and Migration, PLOS Computational Biology, vol.7, issue.Pt 3, pp.1-29 ,
DOI : 10.1371/journal.pcbi.1004571.s018
Detecting cellular reprogramming determinants by differential stability analysis of gene regulatory networks, BMC Systems Biology, vol.7, issue.1, p.140, 2013. ,
DOI : 10.1137/0204007
Concise review: A population shift view of cellular reprogramming, STEM CELLS, vol.32, issue.6, pp.1367-1372, 2014. ,
Forcing cells to change lineages, Nature, vol.15, issue.7273, pp.587-594, 2009. ,
DOI : 10.1016/j.jtbi.2006.01.021
Cell reprogramming modelled as transitions in a hierarchy of cell cycles. ArXiv e-prints, 2016. ,
A Boolean Model of the Cardiac Gene Regulatory Network Determining First and Second Heart Field Identity, PLoS ONE, vol.7, issue.10, pp.1-10, 2012. ,
DOI : 10.1371/journal.pone.0046798.s003
A network model for the control of the differentiation process in Th cells, Dynamical Modeling of Biological Regulatory Networks, pp.101-114, 2006. ,
DOI : 10.1016/j.biosystems.2005.10.004
Logic-Based Models for the Analysis of Cell Signaling Networks, Biochemistry, vol.49, issue.15, pp.3216-3224, 2010. ,
DOI : 10.1021/bi902202q
An Algorithm for Cellular Reprogramming. ArXiv e-prints, 2017. ,
DOI : 10.1101/162974
Modeling ERBB receptor-regulated G1/S transition to find novel targets for de novo trastuzumab resistance, BMC Systems Biology, vol.3, issue.1, pp.1-20, 2009. ,
DOI : 10.1186/1752-0509-3-1
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2652436
Computing Combinatorial Intervention Strategies and Failure Modes in Signaling Networks, Journal of Computational Biology, vol.17, issue.1, pp.39-53, 2010. ,
DOI : 10.1089/cmb.2009.0121
URL : http://pubman.mpdl.mpg.de/pubman/item/escidoc:1755922/component/escidoc:1755921/439492_cmb_2009.pdf
A decade of transcription factor-mediated reprogramming to pluripotency, Nature Reviews Molecular Cell Biology, vol.767, issue.3, pp.183-193, 2016. ,
DOI : 10.1016/j.stem.2013.06.019
Boolean modeling in systems biology: an overview of methodology and applications, Physical Biology, vol.9, issue.5, p.55001, 2012. ,
DOI : 10.1088/1478-3975/9/5/055001
Cell fate reprogramming by control of intracellular network dynamics, PLOS Computational Biology, vol.11, issue.04, pp.1-24 ,