H. Abbasi, M. Wolf, G. Eisenhauer, S. Klasky, K. Schwan et al., DataStager, Proceedings of the 18th ACM international symposium on High performance distributed computing, HPDC '09, pp.277-290, 2010.
DOI : 10.1145/1551609.1551618

L. Bautista-gomez, S. Tsuboi, D. Komatitsch, F. Cappello, N. Maruyama et al., FTI, Proceedings of 2011 International Conference for High Performance Computing, Networking, Storage and Analysis on, SC '11, p.32, 2011.
DOI : 10.1145/2063384.2063427
URL : https://hal.archives-ouvertes.fr/hal-00721216

O. Ben-kiki and C. , Evans, and I. d. Net. YAML Ain't Markup Language (YAML) Version 1, 2009.

P. Corbett, D. Feitelson, S. Fineberg, Y. Hsu, B. Nitzberg et al., Overview of the MPI-IO Parallel I/O Interface, Input/Output in Parallel and Distributed Computer Systems, pp.127-146, 1996.
DOI : 10.1007/978-1-4613-1401-1_5

M. Folk, G. Heber, Q. Koziol, E. Pourmal, and D. Robinson, An overview of the HDF5 technology suite and its applications, Proceedings of the EDBT/ICDT 2011 Workshop on Array Databases, AD '11, pp.36-47, 2011.
DOI : 10.1145/1966895.1966900

L. A. Gomez, N. Maruyama, F. Cappello, and S. Matsuoka, Distributed Diskless Checkpoint for Large Scale Systems, 2010 10th IEEE/ACM International Conference on Cluster, Cloud and Grid Computing, pp.63-72, 2010.
DOI : 10.1109/CCGRID.2010.40

V. Grandgirard, High-Q club: Highest scaling codes on JUQUEEN ? GYSELA: GYrokinetic SEmi-LAgrangian code for plasma turbulence simulations. online, 2015.
DOI : 10.1063/1.2404543

V. Grandgirard, J. Abiteboul, J. Bigot, T. Cartier-michaud, N. Crouseilles et al., global semi-Lagrangian code for flux-driven ion turbulence simulations, Computer Physics Communications, vol.207, pp.35-68, 2016.
DOI : 10.1016/j.cpc.2016.05.007
URL : https://hal.archives-ouvertes.fr/cea-01153011

M. Howison, Tuning HDF5 for Lustre file systems, Workshop on Interfaces and Abstractions for Scientific Data Storage (IASDS10), 2010.

G. Latu, J. Bigot, N. Bouzat, J. Gimenez, and V. Grandgirard, Benefits of smt and of parallel transpose algorithm for the largescale gysela application, Proceedings of the Platform for Advanced Scientific Computing Conference, PASC '16, pp.1-10, 2016.

J. Li, W. Liao, A. Choudhary, R. Ross, R. Thakur et al., Parallel netCDF, Proceedings of the 2003 ACM/IEEE conference on Supercomputing, SC '03, pp.39-39, 2003.
DOI : 10.1145/1048935.1050189

W. Liao, A. Ching, K. Coloma, A. Choudhary, and L. Ward, An Implementation and Evaluation of Client-Side File Caching for MPI-IO, 2007 IEEE International Parallel and Distributed Processing Symposium, pp.1-10, 2007.
DOI : 10.1109/IPDPS.2007.370239

J. F. Lofstead, S. Klasky, K. Schwan, N. Podhorszki, and C. Jin, Flexible IO and integration for scientific codes through the adaptable IO system (ADIOS), Proceedings of the 6th international workshop on Challenges of large applications in distributed environments, CLADE '08, pp.15-24, 2008.
DOI : 10.1145/1383529.1383533

Y. Meurdesoif, XIOS fortran reference guide, 2016.

A. Moody, G. Bronevetsky, K. Mohror, B. R. De, and . Supinski, Design, modeling, and evaluation of a scalable multi-level checkpointing system, 2010 ACM/IEEE International Conference for High Performance Computing, Networking, Storage and Analysis, pp.1-11, 2010.

N. Nethercote, R. Walsh, and J. Fitzhardinge, "Building Workload Characterization Tools with Valgrind", 2006 IEEE International Symposium on Workload Characterization, pp.2-2, 2006.
DOI : 10.1109/IISWC.2006.302723

J. Prost, R. Treumann, R. Hedges, B. Jia, and A. Koniges, MPI-IO/GPFS, an optimized implementation of MPI-IO on top of GPFS, Proceedings of the 2001 ACM/IEEE conference on Supercomputing (CDROM) , Supercomputing '01, pp.58-58, 2001.
DOI : 10.1145/582034.582051

R. Rew and G. Davis, NetCDF: an interface for scientific data access, IEEE Computer Graphics and Applications, vol.10, issue.4, pp.76-82, 1990.
DOI : 10.1109/38.56302

R. Rew, G. Davis, S. Emmerson, H. Davies, and E. Hartnett, NetCDF User's Guide, 1993.

R. Rew, E. Hartnett, and J. Caron, NetCDF-4: software implementing an enhanced data model for the geosciences, 22nd International Conference on Interactive Information Processing Systems for Meteorology, Oceanograph, and Hydrology, 2006.

R. Thakur, W. Gropp, and E. Lusk, On implementing MPI-IO portably and with high performance, Proceedings of the sixth workshop on I/O in parallel and distributed systems , IOPADS '99, pp.23-32, 1999.
DOI : 10.1145/301816.301826
URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.30.9435

R. Thakur, W. Gropp, and E. Lusk, Optimizing noncontiguous accesses in MPI???IO, Parallel Computing, vol.28, issue.1, pp.83-105, 2002.
DOI : 10.1016/S0167-8191(01)00129-6
URL : http://arxiv.org/pdf/cs/0310029

R. Thakur, E. Lusk, and W. Gropp, Users guide for ROMIO: A high-performance, portable MPI-IO implementation, 1997.
DOI : 10.2172/564273

Y. Wang, Y. Su, and G. Agrawal, Supporting a Light-Weight Data Management Layer over HDF5, 2013 13th IEEE/ACM International Symposium on Cluster, Cloud, and Grid Computing, pp.335-342, 2013.
DOI : 10.1109/CCGrid.2013.9