Model checking to assess t-helper cell plasticity, Frontiers in Bioengineering and Biotechnology, vol.2, 2015. ,
DOI : 10.1101/012641
Mathematical Modelling of Molecular Pathways Enabling Tumour Cell Invasion and Migration, PLOS Computational Biology, vol.7, issue.Pt 3, p.1004571, 2015. ,
DOI : 10.1371/journal.pcbi.1004571.s018
Integrative Modelling of the Influence of MAPK Network on Cancer Cell Fate Decision, PLoS Computational Biology, vol.17, issue.4, p.1003286, 2013. ,
DOI : 10.1371/journal.pcbi.1003286.s010
A methodology for the structural and functional analysis of signaling and regulatory networks, BMC Bioinformatics, vol.7, issue.1, p.56, 2006. ,
DOI : 10.1186/1471-2105-7-56
A Logical Model Provides Insights into T Cell Receptor Signaling, PLoS Computational Biology, vol.284, issue.8, p.163, 2007. ,
DOI : 10.1371/journal.pcbi.0030163.st002
URL : http://doi.org/10.1371/journal.pcbi.0030163
Modeling ERBB receptor-regulated G1/S transition to find novel targets for de novo trastuzumab resistance, BMC Systems Biology, vol.3, issue.1, pp.1-20, 2009. ,
DOI : 10.1186/1752-0509-3-1
URL : http://doi.org/10.1186/1752-0509-3-1
The Logic of EGFR/ErbB Signaling: Theoretical Properties and Analysis of High-Throughput Data, PLoS Computational Biology, vol.2, issue.8, p.1000438, 2009. ,
DOI : 10.1371/journal.pcbi.1000438.s007
A network model for the specification of vulval precursor cells and cell fusion control in Caenorhabditis elegans, Frontiers in Genetics, vol.4, issue.112, 2013. ,
DOI : 10.3389/fgene.2013.00112
Complexity results for 1-safe nets, Theoretical Computer Science, vol.147, issue.1-2, pp.117-136, 1995. ,
DOI : 10.1016/0304-3975(94)00231-7
URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.53.8128
Property preserving homomorphisms of transition systems, Lecture Notes in Computer Science, vol.164, pp.458-473, 1984. ,
DOI : 10.1007/3-540-12896-4_381
Computer-aided verification of coordinating processes: the automata-theoretic approach, 1994. ,
DOI : 10.1515/9781400864041
Property preserving abstractions for the verification of concurrent systems, Formal methods in system design, pp.11-44, 1995. ,
DOI : 10.1007/BF01384313
Stochastic fragments: A framework for the exact reduction of the stochastic semantics of rulebased models, International Journal of Software and Informatics, vol.7, issue.4, pp.527-604, 2013. ,
URL : https://hal.archives-ouvertes.fr/hal-01098561
Graphs, rewriting and pathway reconstruction for rule-based models, FSTTCS 2012, ser. LIPIcs, pp.276-288, 2012. ,
URL : https://hal.archives-ouvertes.fr/hal-00809065
Attractor Equivalence: An Observational Semantics for Reaction Networks, First International Conference on Formal Methods in Macro-Biology, pp.82-101, 2014. ,
DOI : 10.1007/978-3-319-10398-3_7
URL : https://hal.archives-ouvertes.fr/hal-00990924
Dynamically consistent reduction of logical regulatory graphs, Theoretical Computer Science, vol.412, issue.21, pp.2207-2218, 2011. ,
DOI : 10.1016/j.tcs.2010.10.021
URL : https://hal.archives-ouvertes.fr/hal-01284743
Bisimulation and the reduction of Petri nets, " in Application and Theory of Petri Nets 2000, ser. Lecture Notes in Computer Science, pp.409-423, 2000. ,
Checking properties of nets using transformations, Lecture Notes in Computer Science, G. Rozenberg, vol.222, pp.19-40, 1986. ,
DOI : 10.1007/BFb0016204
New Efficient Petri Nets Reductions for Parallel Programs Verification, Parallel Processing Letters, pp.101-116, 2006. ,
DOI : 10.1145/361227.361234
URL : https://hal.archives-ouvertes.fr/hal-01125149
Verifying Safety Properties of a PowerPC??? Microprocessor Using Symbolic Model Checking without BDDs, Proc. 11 th Int. Conf. on Computer Aided Verification, pp.60-71, 1999. ,
DOI : 10.1007/3-540-48683-6_8
Multiple Representations of Biological Processes, Transactions on Computational Systems Biology VI. Springer Science Business Media, pp.221-245, 2006. ,
DOI : 10.1007/11880646_10
URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.469.3493
Static analysis of Biological Regulatory Networks dynamics using abstract interpretation, Mathematical Structures in Computer Science, vol.131, issue.04, pp.651-685, 2012. ,
DOI : 10.1007/s11538-008-9304-7
Under-Approximating Cut Sets for Reachability in Large Scale Automata Networks, Computer Aided Verification, ser. Lecture Notes in Computer Science, pp.69-84 ,
DOI : 10.1007/978-3-642-39799-8_4
Goal-Oriented Reduction of Automata Networks, CMSB 2016 -14th conference on Computational Methods for Systems Biology, 2016. ,
DOI : 10.3389/fgene.2013.00112
Finite Transition Systems: Semantics of Communicating Systems, 1994. ,
A survey of basic net models and modular net classes, Lecture Notes in Computer Science, G. Rozenberg, vol.609, pp.304-351, 1992. ,
DOI : 10.1007/3-540-55610-9_177
Concurrent and maximally concurrent evolution of nonsequential systems, Theoretical Computer Science, vol.43, issue.0, pp.213-238, 1986. ,
DOI : 10.1016/0304-3975(86)90177-5
URL : http://doi.org/10.1016/0304-3975(86)90177-5
A uniform approach to true-concurrency and interleaving semantics for Petri nets, Theoretical Computer Science, vol.206, issue.1-2, pp.219-256, 1998. ,
DOI : 10.1016/S0304-3975(97)00169-2
URL : http://doi.org/10.1016/s0304-3975(97)00169-2
Step traces, Acta Informatica, vol.286, issue.1, 2015. ,
DOI : 10.1016/S0304-3975(01)00234-1
On the robustness of update schedules in Boolean networks, Biosystems, vol.97, issue.1, pp.1-8, 2009. ,
DOI : 10.1016/j.biosystems.2009.03.006
Dynamical behaviour of biological regulatory networks?ii. immunity control in bacteriophage lambda, Bulletin of Mathematical Biology, vol.57, pp.277-297, 1995. ,
Semantics of Biological Regulatory Networks, Electronic Notes in Theoretical Computer Science, vol.180, issue.3, pp.3-14, 2007. ,
DOI : 10.1016/j.entcs.2004.01.038
URL : https://hal.archives-ouvertes.fr/hal-00339588
Negative circuits and sustained oscillations in asynchronous automata networks, Advances in Applied Mathematics, vol.44, issue.4, pp.378-392, 2010. ,
DOI : 10.1016/j.aam.2009.11.011
URL : http://doi.org/10.1016/j.aam.2009.11.011
Boolean formalization of genetic control circuits, Journal of Theoretical Biology, vol.42, issue.3, pp.563-585, 1973. ,
DOI : 10.1016/0022-5193(73)90247-6
Static Analysis of Boolean Networks Based on Interaction Graphs: A Survey, proceedings of The Second International Workshop on Static Analysis and Systems Biology, pp.93-104, 2011. ,
DOI : 10.1016/j.entcs.2012.05.017
Minimization of Boolean Functions*, Bell System Technical Journal, vol.35, issue.6, pp.1417-1444, 1956. ,
DOI : 10.1002/j.1538-7305.1956.tb03835.x
Influence Systems vs Reaction Systems, pp.98-115, 2016. ,
DOI : 10.1016/0022-5193(73)90247-6
URL : https://hal.archives-ouvertes.fr/hal-01378470
Unfoldings: A Partial-Order Approach to Model Checking (Monographs in Theoretical Computer Science, An EATCS Series), 2008. ,
RB/E2F pathway ,
Its tools ,
Mole ,
NuSMV 2: An OpenSource Tool for Symbolic Model Checking, Computer Aided Verification, ser. Lecture Notes in Computer Science, pp.241-268, 2002. ,
DOI : 10.1007/3-540-45657-0_29
URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.107.8023
Building efficient model checkers using hierarchical set decision diagrams and automatic saturation, Fundam. Inf, vol.94, pp.3-4, 2009. ,
DOI : 10.1007/978-3-540-68746-7_16
URL : https://hal.archives-ouvertes.fr/hal-01121192
Design and synthesis of synchronization skeletons using branching-time temporal logic, Logic of Programs, pp.52-71, 1981. ,
Identification of biological regulatory networks from Process Hitting models, Theoretical Computer Science, vol.568, issue.0, pp.49-71, 2015. ,
DOI : 10.1016/j.tcs.2014.12.002
URL : https://hal.archives-ouvertes.fr/hal-01094249
Petri nets: Properties, analysis and applications, Proc. of the IEEE, pp.541-580, 1989. ,
DOI : 10.1109/5.24143