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S. Hickinbotham and S. Stepney, Augmenting Live Coding with Evolved Patterns, Proceedings of EvoMusArt, 5th International Conference on Computational Intelligence in Music, Sound, Art and Design, pp.31-46, 2016.
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T. Hoverd and S. Stepney, EvoMachina: a novel evolutionary algorithm inspired by bacterial genome reorganisation (abstract) Late Breaking Abstracts, 2016.

J. Abernot, G. Beslon, S. Hickinbotham, S. Peigner, and C. Rigotti, A Commensal Architecture for Evolving Living Instruments, proceedings of Conference on Computer Simulation of Musical Creativity, p.8, 2016.
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P. S. Andrews and S. Stepney, Using CoSMoS to Reverse Engineer a Domain Model for Aevol, Proceedings of CoSMoS workshop, pp.61-79, 2014.

P. S. Andrews and S. Stepney, A Metamodel for the Evolution of Evolution, proceedings of ECAL 2015, pp.621-628, 2015.

P. S. Andrews and S. Stepney, The CoSMoS Domain Experiment Model, CoSMoS workshop, pp.1-8, 2015.

W. Banzhaf, B. Baumgaertner, G. Beslon, R. Doursat, J. A. Foster et al., Defining and simulating open-ended novelty: requirements, guidelines, and challenges, Theory in Biosciences, vol.78, issue.33, pp.131-161, 2016.
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W. Banzhaf, G. Beslon, R. Doursat, and S. Stepney, Open-Endedness: Definitions and Shortcuts. The Second Workshop on Open-Ended Evolution, p.2, 2016.

B. Batut, G. Beslon, and C. Knibbe, Unexpected genome inflation and streamlining in variable environments, Journées ouvertes de Biologie Informatique & Mathématiques 2016, 2016.
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G. P. Bernet and S. F. Elena, Distribution of mutational fitness effects and of epistasis in the 5??? untranslated region of a plant RNA virus, BMC Evolutionary Biology, vol.20, issue.1, 2015.
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G. Beslon, V. Liard, and S. F. Elena, Evolvability drives innovation in viral genomes. 2nd EvoEvo Workshop, satellite workshop of CCS2016, 2016.
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P. Biller, . Guéguen, C. Knibbe, and E. Tannier, Breaking Good: Accounting for Fragility of Genomic Regions in Rearrangement Distance Estimation, Genome Biology and Evolution, vol.8, issue.5, pp.1427-1439, 2016.
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P. Biller, C. Knibbe, G. Beslon, and E. Tannier, Comparative Genomics on Artificial Life, In: proceedings of CiEComputability in Europe), vol.109, issue.43, pp.35-44, 2016.
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P. Biller, E. Tannier, G. Beslon, and C. Knibbe, In silico experimental evolution provides independent and challenging benchmarks for comparative genomics, Journées ouvertes de Biologie Informatique & Mathématiques 2016, pp.79-82, 2016.
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H. Cervera, J. Lali?, and S. F. Elena, Efficient escape from local optima in a highly rugged fitness landscape by evolving RNA virus populations, Proceedings of the Royal Society B: Biological Sciences, vol.151, issue.1836, p.20160984, 2016.
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H. Cervera and S. F. Elena, Genetic variation in fitness within a clonal population of a plant RNA virus, Virus Evolution, vol.2, issue.1, p.6, 2016.
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H. Cervera, J. Lali?, and S. F. Elena, ABSTRACT, Journal of Virology, vol.90, issue.22, pp.9010160-10169, 2016.
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E. S. Colizzi and P. Hogeweg, Mutational load is ameliorated by increased transcriptional load-associated mutations, if these are biased towards duplications and deletions. 2nd EvoEvo Workshop, satellite workshop of CCS2016, 2016.

J. M. Cuevas, A. Willemsen, J. Hillung, M. P. Zwart, and S. F. Elena, Temporal Dynamics of Intrahost Molecular Evolution for a Plant RNA Virus, Molecular Biology and Evolution, vol.32, issue.5, pp.1132-1147, 2015.
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T. D. Cuypers and P. Hogeweg, Endless evolutionary paths to Virtual Microbes.Workshop, First EvoEvo Workshop, satellite workshop of ECAL2015, 2015.

S. F. Elena, Evolutionary transitions during RNA virus experimental evolution, Philosophical Transactions of the Royal Society B: Biological Sciences, vol.3, issue.1701, p.37120150441, 1701.
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S. F. Elena, Local adaptation of plant viruses: lessons from experimental evolution, Molecular Ecology, vol.292, issue.7, p.27612225, 2016.
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S. Fischer, S. Bernard, G. Beslon, and C. Knibbe, A Model for Genome Size Evolution, Bulletin of Mathematical Biology, vol.104, issue.41, pp.2249-2291, 2014.
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S. Hickinbotham and S. Stepney, Conservation of matter increases evolutionary activity, proceedings of ECAL 2015, pp.98-105, 2015.
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S. Hickinbotham and S. Stepney, Environmental bias forces parasitism in Tierra, proceedings of ECAL 2015, pp.294-301, 2015.
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S. Hickinbotham and S. Stepney, Bio-Reflective Architectures for Evolutionary Innovation, Proceedings of the Artificial Life Conference 2016, pp.192-199, 2016.
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S. Hickinbotham and S. Stepney, Augmenting Live Coding with Evolved Patterns, Proceedings of EvoMusArt, 5th International Conference on Computational Intelligence in Music, Sound, Art and Design, pp.31-46, 2016.
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S. Hickinbotham and P. Hogeweg, Evolution towards extinction in replicase models: inevitable unless... 2nd EvoEvo Workshop, satellite workshop of CCS2016, 2016.

J. Hillung, J. M. Cuevas, and S. F. Elena, Evaluating the within-host fitess effects of mutations fixed during virus adaptatyion to different ecotypes of a new host, Philosophical Transactions of the Royal Society, Biological Sciences, p.37020140292, 1675.

J. Hillung, F. García-garcía, J. Dopazo, J. M. Cuevas, and S. F. Elena, The transcriptomics of an experimentally evolved plant-virus interaction, Scientific Reports, vol.22, issue.1, p.24901, 2016.
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T. Hoverd and S. Stepney, EvoMachina: a novel evolutionary algorithm inspired by bacterial genome reorganisation. Late Breaking Abstracts, p.2, 2016.

T. Hoverd and S. Stepney, EvoMachina: a novel evolutionary algorithm inspired by bacterial genome reorganisation, 2016.

C. Knibbe and D. Parsons, What happened to my genes? Insights on gene family dynamics from digital genetics experiments, proceedings of ALIFE 14, 14th Intl. Conf. on the Synthesis and Simulation of Living Systems. New-York (US), pp.33-40, 2014.
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J. Lali? and S. F. Elena, The impact of high-order epistasis in the within-host fitness of a positive-sense plant RNA virus, Journal of Evolutionary Biology, vol.1, issue.12, pp.2236-2247, 2015.
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S. Peigner, C. Rigotti, and G. Beslon, Subspace Clustering for all Seasons. First EvoEvo Workshop, satellite workshop of ECAL2015, 2015.

S. Peignier, C. Rigotti, and G. Beslon, Subspace Clustering Using Evolvable Genome Structure, Proceedings of the 2015 on Genetic and Evolutionary Computation Conference, GECCO '15, pp.575-582, 2015.
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J. Plucain, A. Suau, S. Cruveiller, C. Médigue, D. Schneider et al., Contrasting effects of historical contingency on phenotypic and genomic trajectories during a two-step evolution experiment with bacteria, BMC Evolutionary Biology, vol.1, issue.D1, p.86, 2016.
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C. Rocabert, C. Knibbe, J. Consuegra, D. Schneider, and G. Beslon, Environmental Driving of Bacterial Diversification in In Silico Experimental Evolution. Evolutionary systems biology: from model organisms to human disease workshop, 2016.

J. Rutten, P. Hogeweg, and G. Beslon, Evolution of mutator populations in constant environments. 2nd EvoEvo Workshop, satellite workshop of CCS2016, p.5, 2016.
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S. Stepney and G. Beslon, Open-Endedness: Definitions and Shortcuts. 2nd EvoEvo Workshop, satellite workshop of CCS2016, p.6, 2016.
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N. Tromas, M. P. Zwart, J. Forment, and S. F. Elena, Shrinkage of Genome Size in a Plant RNA Virus upon Transfer of an Essential Viral Gene into the Host Genome, Genome Biology and Evolution, vol.6, issue.3, pp.538-550, 2014.
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G. Beslon, (. Inria-), and V. Liard, Evolvability drives innovation in viral genomes
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. Bram-van-dijk, Paulien Hogeweg (Utrecht University): Evolution of r-and K-selected species of Virtual Microbes: a case study in a simple fluctuating 2-resource environment, Thomas Cuypers

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B. Batut, G. Beslon, and . Knibbe, Genome inflation and streamlining in variable environments, 2016.
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G. Beslon, V. Liard, and S. Elena, Evolvability drives innovation in viral genomes. 2nd EvoEvo Workshop, satellite workshop of CCS2016, 2016.
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G. Beslon, V. Liard, and S. F. Elena, Evolvability drives innovation in viral genomes, 2016.
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H. Cervera, J. Lali?, and S. F. Elena, ABSTRACT, Journal of Virology, vol.90, issue.22, p.27581976, 2016.
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E. S. Colizzi and P. Hogeweg, Increased rate of duplications and deletions prevents evolutionary deterioration; Understanding the mutational dynamics of yeast rDNA Multilevel Evolution and the Emergence of Function, 2016.

E. S. Colizzi and P. Hogeweg, High cost enhances cooperation through the interplay between evolution and self-organisation, BMC Evolutionary Biology, vol.267, issue.1456, p.31, 2016.
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T. D. Cuypers and P. Hogeweg, Virtual Genomes in Flux: An Interplay of Neutrality and Adaptability Explains Genome Expansion and Streamlining, Genome Biology and Evolution, vol.4, issue.3, pp.212-229, 2012.
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F. K. De-boer and P. Hogeweg, Co-evolution and ecosystem based problem solving, Ecological Informatics, vol.9, pp.47-58, 2012.
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S. F. Elena, Local adaptation of plant viruses: lessons from experimental evolution, Molecular Ecology, vol.292, issue.7, 2016.
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