A mechanistic study of the antibacterial effect of silver ions onEscherichia coli andStaphylococcus aureus, Journal of Biomedical Materials Research, vol.3, issue.4, pp.662-670, 2000. ,
DOI : 10.1002/1097-4636(20001215)52:4<662::AID-JBM10>3.0.CO;2-3
Silver I: its antibacterial properties and mechanism of action, Journal of Wound Care, vol.11, issue.4, pp.125-155, 2002. ,
DOI : 10.12968/jowc.2002.11.4.26389
Mode of Bactericidal Action of Silver Zeolite and Its Comparison with That of Silver Nitrate, Applied and Environmental Microbiology, vol.69, issue.7, pp.4278-81000184082100082, 2003. ,
DOI : 10.1128/AEM.69.7.4278-4281.2003
Silver as biocides in burn and wound dressings and bacterial resistance to silver compounds, Journal of Industrial Microbiology & Biotechnology, vol.20, issue.7, pp.627-661, 2006. ,
DOI : 10.1007/s10295-006-0139-7
Silver tolerance and accumulation in yeasts, Biology of Metals, vol.32, issue.2, pp.100-106, 1991. ,
DOI : 10.1007/BF01135386
Silver 2: toxicity in mammals and how its products aid wound repair, Journal of Wound Care, vol.11, issue.5, pp.173-180, 2002. ,
DOI : 10.12968/jowc.2002.11.5.26398
Historical review of the use of silver in the treatment of burns. I. Early uses, Burns, vol.26, issue.2, pp.117-147, 2000. ,
DOI : 10.1016/S0305-4179(99)00108-4
Interaction of silver nitrate with readily identifiable groups: relationship to the antibacterialaction of silver ions, Letters in Applied Microbiology, vol.25, issue.4, pp.279-83, 1997. ,
DOI : 10.1046/j.1472-765X.1997.00219.x
Silver Coordination Polymers for Prevention of Implant Infection: Thiol Interaction, Impact on Respiratory Chain Enzymes, and Hydroxyl Radical Induction, Antimicrobial Agents and Chemotherapy, vol.54, issue.10, pp.4208-4226, 2010. ,
DOI : 10.1128/AAC.01830-09
Antibacterial effects of silver nanoparticles on gram-negative bacteria: Influence on the growth and biofilms formation, mechanisms of action, Colloids and Surfaces B: Biointerfaces, vol.102, pp.300-306, 2013. ,
DOI : 10.1016/j.colsurfb.2012.07.039
Bactericidal activity of Ag???zeolite mediated by reactive oxygen species under aerated conditions, Journal of Inorganic Biochemistry, vol.92, issue.1, pp.37-42, 2002. ,
DOI : 10.1016/S0162-0134(02)00489-0
Silver-ion-mediated reactive oxygen species generation affecting bactericidal activity, Water Research, vol.43, issue.4, pp.1027-1059, 2009. ,
DOI : 10.1016/j.watres.2008.12.002
Synchrotron FTIR microspectroscopy of Escherichia coli at single-cell scale under silver-induced stress conditions, Analytical and Bioanalytical Chemistry, vol.9, issue.8???9, pp.2685-97, 2013. ,
DOI : 10.1007/s00216-013-6725-4
URL : https://hal.archives-ouvertes.fr/hal-01003324
Using microbial genomics to evaluate the effectiveness of silver to prevent biofilm formation. Water science and technology: a journal of the International Association on Water Pollution Research, pp.8-9413, 2007. ,
Systems-level analysis of Escherichia coli response to silver nanoparticles: the roles of anaerobic respiration in microbial resistance. Biochemical and biophysical research communications, pp.657-62, 2012. ,
NanoSIMS50-a powerful tool to elucidate cellular localization of halogenated organic compounds. Analytical and bioanalytical chemistry, pp.2693-2701, 2012. ,
NanoSIMS: Technical Aspects and Applications in Cosmochemistry and Biological Geochemistry, Geostandards and Geoanalytical Research, vol.17, issue.Suppl S2, pp.111-54, 2013. ,
DOI : 10.1111/j.1751-908X.2013.00239.x
URL : http://hdl.handle.net/11858/00-001M-0000-0014-C390-7
Advances in the Analysis of Biogeochemical Interfaces, Adv Agron, vol.121, pp.1-46, 2013. ,
DOI : 10.1016/B978-0-12-407685-3.00001-3
The Complete Genome Sequence of Escherichia coli K-12, Science, vol.277, issue.5331, pp.1453-62, 1997. ,
DOI : 10.1126/science.277.5331.1453
Plasma-Mediated Nanosilver-Organosilicon Composite Films Deposited on Stainless Steel: Synthesis, Surface Characterization, and Evaluation of Anti-Adhesive and Anti-Microbial Properties on the Model Yeast Saccharomyces cerevisiae, Plasma Processes and Polymers, vol.83, issue.144, pp.324-362, 2012. ,
DOI : 10.1002/ppap.201100033
URL : https://hal.archives-ouvertes.fr/hal-01268402
High-resolution quantitative imaging of mammalian and bacterial cells using stable isotope mass spectrometry, Journal of Biology, vol.5, issue.6, pp.20-50, 2006. ,
DOI : 10.1186/jbiol42
R: A language and environment for statistical computing. R Foundation for Statistical Computing V, Austria, 2012. ,
affy--analysis of Affymetrix GeneChip data at the probe level, Bioinformatics, vol.20, issue.3, pp.307-322, 2004. ,
DOI : 10.1093/bioinformatics/btg405
linear models for microarray data, Bioinformatics and Computational Biology Solutions using, pp.397-420, 2005. ,
DOI : 10.1007/0-387-29362-0_23
URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.182.2271
Exploration, normalization, and summaries of high density oligonucleotide array probe level data, Biostatistics, vol.4, issue.2, pp.249-64, 2003. ,
DOI : 10.1093/biostatistics/4.2.249
Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Statistical applications in genetics and molecular biology, 2004. ,
DOI : 10.2202/1544-6115.1027
URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.135.8477
Controlling the false discovery rate: a practical and powerful approach to multiple testing, Journal of the Royal Statistical Society Series B, vol.57, pp.289-300, 1995. ,
topGO: Enrichment analysis for Gene Ontology, 2.2.0 Rpv, 2010. ,
A Sparse PLS for Variable Selection when Integrating Omics Data. Statistical applications in genetics and molecular biology, 2008. ,
URL : https://hal.archives-ouvertes.fr/hal-00300204
integrOmics: an R package to unravel relationships between two omics datasets, Bioinformatics, vol.25, issue.21, pp.2855-2861, 2009. ,
DOI : 10.1093/bioinformatics/btp515
Visualising associations between paired ???omics??? data sets, BioData Mining, vol.43, issue.3, p.19, 2013. ,
DOI : 10.1002/cem.1180010105
URL : https://hal.archives-ouvertes.fr/hal-00943410
Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks, Genome Research, vol.13, issue.11, pp.2498-504, 2003. ,
DOI : 10.1101/gr.1239303
Uptake visualization of deltamethrin by NanoSIMS and acute toxicity to the water flea Daphnia magna, Chemosphere, vol.76, issue.1, pp.134-174, 2009. ,
DOI : 10.1016/j.chemosphere.2009.02.005
Fourier Transform Infrared (FTIR) Spectroscopy of Biological Tissues, Applied Spectroscopy Reviews, vol.52, issue.2, pp.134-79, 2008. ,
DOI : 10.1002/jrs.1107
Roles of the FabA and FabZ beta-hydroxyacyl-acyl carrier protein dehydratases in Escherichia coli fatty acid biosynthesis. The Journal of biological chemistry, pp.27795-801, 1996. ,
Regulation of fatty acid biosynthesis in Escherichia coli. Microbiological reviews, PMID, vol.57, issue.3, pp.522-564, 1993. ,
Ag nanoparticles: size- and surface-dependent effects on model aquatic organisms and uptake evaluation with NanoSIMS, Nanotoxicology, vol.401, issue.7, pp.1168-78, 2013. ,
DOI : 10.1021/es101484s
Identification and localization of nanoparticles in tissues by mass spectrometry, Surface and Interface Analysis, vol.260, issue.1, pp.230-233, 2013. ,
DOI : 10.1002/sia.5099
Toxicity Mechanisms in Escherichia coli Vary for Silver Nanoparticles and Differ from Ionic Silver, ACS Nano, vol.8, issue.1, pp.374-86, 2014. ,
DOI : 10.1021/nn4044047
to adverse conditions determined by microarrays and FT-IR spectroscopy, Canadian Journal of Microbiology, vol.55, issue.6, pp.714-742, 2009. ,
DOI : 10.1139/W09-016
cis/trans isomerization of unsaturated fatty acids as possible control mechanism of membrane fluidity inPseudomonas putida P8, Bf02522976 WOS:A1996VD35200003. PMID, pp.811-816, 1996. ,
DOI : 10.1007/BF02522976
The cis-trans isomerase of unsaturated fatty acids in Pseudomonas and Vibrio: biochemistry, molecular biology and physiological function of a unique stress adaptive mechanism. FEMS microbiology letters, pp.1-7, 2003. ,
Formation of trans Fatty Acids Is Not Involved in Growth-Linked Membrane Adaptation of Pseudomonas putida, Applied and Environmental Microbiology, vol.71, issue.4, pp.1915-1937, 2005. ,
DOI : 10.1128/AEM.71.4.1915-1922.2005
Changes in Membrane Fatty Acids Composition of Microbial Cells Induced by Addiction of Thymol, Carvacrol, Limonene, Cinnamaldehyde, and Eugenol in the Growing Media, Journal of Agricultural and Food Chemistry, vol.54, issue.7, pp.2745-2754, 2006. ,
DOI : 10.1021/jf052722l
Effects of sub-lethal concentrations of hexanal and 2-(E)-hexenal on membrane fatty acid composition and volatile compounds of Listeria monocytogenes, Staphylococcus aureus, Salmonella enteritidis and Escherichia coli, International Journal of Food Microbiology, vol.123, issue.1-2, pp.1-8, 2008. ,
DOI : 10.1016/j.ijfoodmicro.2007.09.009
Genome-Wide Transcriptional Response of Chemostat-Cultured Escherichia coli to Zinc, Journal of Bacteriology, vol.187, issue.3, pp.1124-1158, 2005. ,
DOI : 10.1128/JB.187.3.1124-1134.2005
Multiple High-Throughput Analyses Monitor the Response of E. coli to Perturbations, Science, vol.316, issue.5824, pp.593-600, 2007. ,
DOI : 10.1126/science.1132067
Transcriptional Responses of Escherichia coli to S-Nitrosoglutathione under Defined Chemostat Conditions Reveal Major Changes in Methionine Biosynthesis, Journal of Biological Chemistry, vol.280, issue.11, pp.10065-72, 2005. ,
DOI : 10.1074/jbc.M410393200
Escherichia coli Transcriptome Dynamics during the Transition from Anaerobic to Aerobic Conditions, Journal of Biological Chemistry, vol.281, issue.38, pp.27806-27821, 2006. ,
DOI : 10.1074/jbc.M603450200
Identification of the L,D-Transpeptidases for Peptidoglycan Cross-Linking in Escherichia coli, Journal of Bacteriology, vol.190, issue.13, pp.4782-4787, 2008. ,
DOI : 10.1128/JB.00025-08
K12 Elicits Expression of Oxidative Stress Responses and Protein Nitration and Nitrosylation, Journal of Biological Chemistry, vol.285, issue.27, pp.20724-20755, 2010. ,
DOI : 10.1074/jbc.M109.085506
Metabolomic and transcriptomic stress response of Escherichia coli, Molecular Systems Biology, vol.180, 2010. ,
DOI : 10.1128/JB.183.15.4562-4570.2001
URL : http://doi.org/10.1038/msb.2010.18
The expression profile of Escherichia coli K-12 in response to minimal, optimal and excess copper concentrations, Microbiology, vol.151, issue.4, pp.1187-98000228509100017, 2005. ,
DOI : 10.1099/mic.0.27650-0
Cadmium Toxicity in Glutathione Mutants of Escherichia coli, Journal of Bacteriology, vol.190, issue.15, pp.5439-54, 2008. ,
DOI : 10.1128/JB.00272-08
A genetic analysis of the response of Escherichia coli to cobalt stress, Environmental Microbiology, vol.61, issue.10, pp.2846-57, 2010. ,
DOI : 10.1111/j.1462-2920.2010.02265.x
URL : https://hal.archives-ouvertes.fr/hal-01145017