S. Abe, S. Rhee, . Ki, M. Osonoi, T. Nakamura et al., Expression of intermediate filaments at muscle insertions in human fetuses, Journal of Anatomy, vol.37, issue.2, 2010.
DOI : 10.1111/j.1469-7580.2010.01246.x

L. Aven, A. , and X. , Mechanisms of respiratory innervation during embryonic development, Organogenesis, vol.11, issue.3, pp.194-198, 2013.
DOI : 10.1007/s11882-009-0071-9

A. H. Koning, Design and validation of a 3D virtual reality desktop system for sonographic length and volume measurements in early pregnancy evaluation, J. Clin, 2015.

B. S. De-bakker, K. H. De-jong, J. Hagoort, K. De-bree, C. T. Besselink et al., An interactive three-dimensional digital atlas and quantitative database of human development, Science, vol.32, issue.6315, p.53, 2016.
DOI : 10.1002/jmor.1050880104

P. Bastide, C. Darido, J. Pannequin, R. Kist, S. Robine et al., Sox9 regulates cell proliferation and is required for Paneth cell differentiation in the intestinal epithelium, The Journal of Cell Biology, vol.14, issue.4, 2007.
DOI : 10.1126/science.286.5437.113

URL : https://hal.archives-ouvertes.fr/hal-00267010

M. Belle, D. Godefroy, C. Dominici, C. Heitz-marchaland, P. Zelina et al., A Simple Method for 3D Analysis of Immunolabeled Axonal Tracts in a Transparent Nervous System. Cell Rep, pp.1191-1201, 2014.
URL : https://hal.archives-ouvertes.fr/hal-01083957

M. I. Castro, Analysis of early human neural crest development, Dev. Biol, vol.344, pp.578-592, 2010.

E. Blechschmidt, The Beginnings of Human Life, 1977.

N. Bondurand and M. H. Sham, The role of SOX10 during enteric nervous system development, Developmental Biology, vol.382, issue.1, pp.330-343, 2013.
DOI : 10.1016/j.ydbio.2013.04.024

N. Bondurand, A. Kobetz, V. Pingault, N. Lemort, F. Encha-razavi et al., gene during human development, FEBS Letters, vol.101, issue.3, pp.168-172, 1998.
DOI : 10.1016/S0014-5793(98)00843-6

F. Bourgeois, J. Messéant, E. Kordeli, J. M. Petit, P. Delers et al., A critical and previously unsuspected role for doublecortin at the neuromuscular junction in mouse and human, Neuromuscular Disorders, vol.25, issue.6, pp.461-473, 2015.
DOI : 10.1016/j.nmd.2015.01.012

A. M. Bispo-de-filippis, Zika virus intrauterine infection causes fetal brain abnormality and microcephaly: Tip of the iceberg?, Ultrasound Obstet. Gynecol, vol.47, pp.6-7, 2016.

G. D. Orvis and R. R. Behringer, Cellular mechanisms of M??llerian duct formation in the mouse, Developmental Biology, vol.306, issue.2, pp.493-504, 2007.
DOI : 10.1016/j.ydbio.2007.03.027

P. Matryba, N. Plesnila, M. Dichgans, F. Hellal, and A. Ertürk, Shrinkagemediated imaging of entire organs and organisms using uDISCO, Nat. Methods, 2016.

M. C. Parera, M. Van-dooren, M. Van-kempen, R. De-krijger, F. Grosveld et al., Distal angiogenesis: a new concept for lung vascular morphogenesis, AJP: Lung Cellular and Molecular Physiology, vol.288, issue.1, pp.141-149, 2005.
DOI : 10.1152/ajplung.00148.2004

URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.326.2676

L. M. Parysek, R. L. Chisholm, C. A. Ley, and R. D. Goldman, A type III intermediate filament gene is expressed in mature neurons, Neuron, vol.1, issue.5, pp.395-401, 1988.
DOI : 10.1016/0896-6273(88)90189-4

R. K. Pooh, K. Shiota, and A. Kurjak, Imaging of the human embryo with magnetic resonance imaging microscopy and high-resolution transvaginal 3-dimensional sonography: human embryology in the 21st century, American Journal of Obstetrics and Gynecology, vol.204, issue.1, 2011.
DOI : 10.1016/j.ajog.2010.07.028

D. Portes, V. Francis, F. Pinard, J. M. Desguerre, I. Moutard et al., Doublecortin is the major gene causing X-linked subcortical laminar heterotopia (SCLH) Hum, 1998.

N. Renier, E. L. Adams, C. Kirst, Z. Wu, R. Azevedo et al., Mapping of Brain Activity by Automated Volume Analysis of Immediate Early Genes, Cell, vol.165, issue.7, pp.1789-1802, 2016.
DOI : 10.1016/j.cell.2016.05.007

D. S. Richardson and J. W. Lichtman, Clarifying Tissue Clearing, Cell, vol.162, issue.2, pp.246-257, 2015.
DOI : 10.1016/j.cell.2015.06.067

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4537058

B. E. Rockich, S. M. Hrycaj, H. P. Shih, M. S. Nagy, M. A. Ferguson et al., Sox9 plays multiple roles in the lung epithelium during branching morphogenesis, Proceedings of the National Academy of Sciences, vol.23, issue.10, pp.4456-64, 2013.
DOI : 10.1097/WNR.0b013e328355f260

F. R. Sabin, The lymphatic system in human embryos, with a consideration of the morphology of the system as a whole, American Journal of Anatomy, vol.9, issue.1, pp.43-91, 1909.
DOI : 10.1002/aja.1000090104

A. Sarkar and K. Hochedlinger, The Sox Family of Transcription Factors: Versatile Regulators of Stem and Progenitor Cell Fate, Cell Stem Cell, vol.12, issue.1, pp.15-30, 2013.
DOI : 10.1016/j.stem.2012.12.007

C. Schuster, M. Mildner, A. Botta, L. Nemec, R. Rogojanu et al., Development of Blood and, 2015.

M. P. Sparrow, M. Weichselbaum, and P. B. Mccray, Development of the Innervation and Airway Smooth Muscle in Human Fetal Lung, American Journal of Respiratory Cell and Molecular Biology, vol.20, issue.4, 1999.
DOI : 10.1165/ajrcmb.20.4.3385

F. Razavi, A. Munnich, S. Lyonnet, and M. Vekemans, Expression of the PAX2 gene in human embryos and exclusion in the CHARGE syndrome, Am. J, 2000.

Q. And, S. A. Data, . Software, and . Availability, All movies and files are available through a dedicated website

K. Resources, . Key, . Table, R. Or, B. Source et al., RRID: AB_1078266 Mouse monoclonal anti-ALCAM/BEN (Clone F84.1) Santa Cruz Biotechnology Cat# sc 53980; RRID:AB_831079 Goat polyclonal anti-Choline Acetyltransferase Millipore Cat# AB144P; RRID:AB_2079751 Rabbit polyclonal anti-mouse collagen Type IV MD Biosciences Cat# MD20451; RRID:AB_10576569 Rat monoclonal anti-Ctip2 Abcam Cat# ab18465; RRID:AB_2064130 Mouse monoclonal anti-D2-40 Endothelial marker BioLegend Cat# 916601; RRID:AB_2565182 Goat anti-Doublecortin (C18) Santa Cruz Biotechnology Cat# sc-8066; RRID:AB_2088494 Rabbit monoclonal anti-Doublecortin Cell Signaling Technology Cat# 4604S; RRID:AB_10693771 Mouse monoclonal anti-Foxp1 (Clone JC12) Abcam Cat# ab32010; RRID:AB_1141518 Goat polyclonal anti-Foxp2 (N16) Santa Cruz Biotechnology Cat# sc-21069; RRID:AB_2107124 Rabbit polyclonal anti-Foxp2 Abcam Cat# ab16046; RRID:AB_2107107 Rabbit polyclonal anti-Phospho-Histone H3(Ser10) Cell Signaling Technology Cat# 9701S; RRID:AB_331534 Rabbit polyclonal anti-Islet1 Abcam Cat# ab20670; RRID:AB_881306 Rabbit polyclonal anti-Ki67 Abcam Cat# ab15580, RRID:AB_443209 Guinea-pig monoclonal anti-Lmx1b Carmen Birchmeier, MaxDelbrück Center for Molecular Medicine, p.2314752

M. Cat# and A. Rrid, AB_10141047 Mouse monoclonal anti-Parvalbumine Swant Cat# 235 RRID:AB_10000343 Goat polyclonal anti-Human Pax2 R and D Systems Cat# AF3364; RRID:AB_10889828 Rabbit polyclonal anti-Pax6 Millipore Cat# AB5409, RRID:AB_2315065 Mouse Anti-Chicken PAX7 Monoclonal Antibody, p.528428

M. Cat# and M. , RRID:AB_2284441 Rabbit polyclonal anti-Peripherin Millipore Cat# AB1530; RRID:AB_90725 Rabbit polyclonal anti-Phox2b J, p.2315160

D. Anti-goat and H. Igg, Alexa Fluor 647) preadsorbed Abcam Cat# ab150135; RRID: N/A Donkey Anti-Goat IgG (H+L) Cy?3 AffiniPure Jackson ImmunoResearch Labs Cat#, pp.705-165

T. Fisher, S. Cat#, and A. , RRID:AB_2534013 Tested, non-working antibodies Table S1 Biological Samples Human tissue This paper N/A Chemicals, Peptides, and Recombinant Proteins Tetrahydrofuran Anhydre >99.9% (THF) Sigma-Adrich Cat# 186562 CAS Number, pp.109-99

X. Triton, E. Sigma, . Kit, S. Cat#, S. Kit et al., Adrich Cat# X100-500ml CAS Number: 9002- 93-1 SYLGARD® 184 SILICONE, Critical Commercial Assays