Chemical reaction network structure and the stability of complex isothermal reactors???I. The deficiency zero and deficiency one theorems, Chemical Engineering Science, vol.42, issue.10, pp.2229-2268, 1987. ,
DOI : 10.1016/0009-2509(87)80099-4
The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models, Bioinformatics, vol.19, issue.4, pp.524-531, 2003. ,
DOI : 10.1093/bioinformatics/btg015
BIOCHAM: an environment for modeling biological systems and formalizing experimental knowledge, Bioinformatics, vol.22, issue.14, pp.1805-1807, 2006. ,
DOI : 10.1093/bioinformatics/btl172
URL : https://hal.archives-ouvertes.fr/hal-01431364
Rule-based modeling of transcriptional attenuation at the tryptophan operon, In Transactions on Computational Systems Biology, pp.199-228, 2010. ,
URL : https://hal.archives-ouvertes.fr/hal-00445566
Petri net modelling of biological networks, Briefings in Bioinformatics, vol.8, issue.4, pp.210-219, 2007. ,
DOI : 10.1093/bib/bbm029
BioModels: Content, Features, Functionality and Use. CPT: Pharmacometrics & Systems Pharmacology, pp.55-68, 2015. ,
SubtiWiki--a comprehensive community resource for the model organism Bacillus subtilis, Nucleic Acids Research, vol.40, issue.D1, pp.1278-1287, 2012. ,
DOI : 10.1093/nar/gkr923
Qualitative Reasoning for Reaction Networks with Partial Kinetic Information, Computational Methods for Systems Biology Lecture Notes in Computer Science, vol.9308, pp.157-169, 2015. ,
DOI : 10.1007/978-3-319-23401-4_14
Reduction of dynamical biochemical reactions networks in computational biology, Die kinetik der invertinwirkung, pp.352-363, 1913. ,
DOI : 10.3389/fgene.2012.00131
On the validity of the steady state assumption of enzyme kinetics, Bulletin of Mathematical Biology, vol.50, issue.6, pp.579-593, 1988. ,
DOI : 10.1016/S0092-8240(88)80057-0
On the mathematical status of the pseudo-steady state hypothesis of biochemical kinetics, Mathematical Biosciences, vol.1, issue.1, pp.95-113, 1967. ,
DOI : 10.1016/0025-5564(67)90029-6
The quasi-steady-state assumption: a case study in perturbation. SIAM review, pp.446-477, 1989. ,
A schematic method of deriving the rate laws for enzyme-catalyzed reactions. The Journal of physical chemistry, pp.1375-1378, 1956. ,
Graphical rules of steady-state reaction systems, Canadian Journal of Chemistry, vol.59, issue.4, pp.737-755, 1981. ,
DOI : 10.1139/v81-107
Inferring reaction systems from ordinary differential equations, Theoretical Computer Science, vol.599, pp.64-78, 2015. ,
DOI : 10.1016/j.tcs.2014.07.032
URL : https://hal.archives-ouvertes.fr/hal-01103692
Graphical reduction of reaction networks by linear elimination of species, Journal of Mathematical Biology, vol.40, issue.73, pp.1-43, 2016. ,
DOI : 10.1021/ed069p544
Attractor Equivalence: An Observational Semantics for Reaction Networks, In Formal Methods in Macro-Biology, 2014. ,
DOI : 10.1007/978-3-319-10398-3_7
URL : https://hal.archives-ouvertes.fr/hal-00990924
Observational program calculi and the correctness of translations, Theoretical Computer Science, vol.577, issue.577, pp.98-124 ,
DOI : 10.1016/j.tcs.2015.02.027
URL : https://hal.archives-ouvertes.fr/hal-00824349
Computation of elementary modes: a unifying framework and the new binary approach, BMC Bioinformatics, vol.5, issue.1, pp.175-197, 2004. ,
DOI : 10.1186/1471-2105-5-175
Structural simplification of chemical reaction networks in partial steady states modeling identifies Smad nucleocytoplasmic shuttling as a dynamic signal-interpreting system, Proceedings of the National Academy of Sciences, pp.6608-6613, 2008. ,