M. Esteller, Non-coding RNAs in human disease, Nat. Rev. Genet, vol.12, pp.861-874, 2011.

S. Higashi, C. Fournier, C. Gautier, C. Gaspin, and M. Sagot, Mirinho: An efficient and general plant and animal pre-miRNA predictor for genomic and deep sequencing data, BMC Bioinformatics, vol.16, p.179, 2015.
URL : https://hal.archives-ouvertes.fr/hal-01166487

S. Agarwal, C. Vaz, A. Bhattacharya, and A. Srinivasan, Prediction of novel precursor miRNAs using a context-sensitive hidden Markov model (CSHMM), BMC Bioinformatics, vol.11, p.29, 2010.

Y. Wu, B. Wei, H. Liu, T. Li, and S. Rayner, MiRPara: a SVM-based software tool for prediction of most probable microRNA coding regions in genome scale sequences, BMC Bioinformatics, vol.12, p.107, 2011.

S. Tempel and F. Tahi, A fast ab-initio method for predicting miRNA precursors in genomes, Nucleic Acids Res, vol.40, p.80, 2012.
URL : https://hal.archives-ouvertes.fr/hal-00667075

S. Tyagi, C. Vaz, V. Gupta, R. Bhatia, S. Maheshwari et al., CID-miRNA: a web server for prediction of novel miRNA precursors in human genome, Biochem. Biophys. Res. Commun, vol.372, pp.831-834, 2008.

A. Grundhoff, C. Sullivan, and D. Ganem, A combined computational and microarray-based approach identifies novel microRNAs encoded by human gamma-herpesviruses, RNA, vol.12, pp.733-750, 2006.

P. Kerpedjiev, S. Hammer, and I. Hofacker, Forna (force-directed RNA): Simple and effective online RNA secondary structure diagrams, Bioinformatics, vol.31, pp.3377-3379, 2015.

A. Kozomara and S. Griffiths-jones, miRBase: integrating microRNA annotation and deep-sequencing data, Nucleic Acids Res, vol.39, pp.152-157, 2011.

V. D. Tran, S. Tempel, and B. Zerath, miRBoost: boosting support vector machines for microRNA precursor classification, RNA, vol.21, pp.775-785, 2015.
URL : https://hal.archives-ouvertes.fr/hal-01146718

S. Tempel, N. Pollet, and F. Tahi, 2012) ncRNAclassifier: a tool for the detection of transposable element sequences in RNA hairpins and their classification, BMC Bioinformatics, vol.13, p.246