A. Gheyas, C. Boschiero, L. Eory, H. Ralph, R. Kuo et al., Functional classification of 15 million SNPs detected from diverse chicken populations, DNA Research, vol.22, issue.3, pp.205-222, 2015.
DOI : 10.1093/dnares/dsv005

X. Li, A. Buitenhuis, M. Lund, C. Li, D. Sun et al., Joint genome-wide association study for milk fatty acid traits in Chinese and Danish Holstein populations, Journal of Dairy Science, vol.98, issue.11, pp.8152-63, 2015.
DOI : 10.3168/jds.2015-9383

H. Shinada, T. Yamamoto, H. Sato, E. Yamamoto, K. Hori et al., Quantitative trait loci for rice blast resistance detected in a local rice breeding population by genome-wide association mapping, Breeding Science, vol.65, issue.5, pp.388-95, 2015.
DOI : 10.1270/jsbbs.65.388

I. Marcotuli, K. Houston, R. Waugh, G. Fincher, R. Burton et al., Genome Wide Association Mapping for Arabinoxylan Content in a Collection of Tetraploid Wheats, ):e0132787. Available from, 2015.
DOI : 10.1371/journal.pone.0132787.s002

S. Ossowski, K. Schneeberger, R. Clark, C. Lanz, N. Warthmann et al., Sequencing of natural strains of Arabidopsis thaliana with short reads, Genome Research, vol.18, issue.12, pp.2024-2057, 2008.
DOI : 10.1101/gr.080200.108

J. Cao, K. Schneeberger, S. Ossowski, T. Günther, S. Bender et al., Whole-genome sequencing of multiple Arabidopsis thaliana populations, Nature Genetics, vol.155, issue.10, pp.956-63, 2011.
DOI : 10.1016/j.ajhg.2009.01.005

P. Danecek, A. Auton, G. Abecasis, C. Albers, E. Banks et al., The variant call format and VCFtools, Bioinformatics, vol.27, issue.15, pp.2156-2164, 2011.
DOI : 10.1093/bioinformatics/btr330

A. Mckenna, M. Hanna, E. Banks, A. Sivachenko, K. Cibulskis et al., The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data, Genome Research, vol.20, issue.9, pp.1297-303, 2010.
DOI : 10.1101/gr.107524.110

J. Casbon, PyVCF -A Variant Call Format Parser for Python Available from: https://pyvcf.readthedocs.org/en, 2012.

V. Obenchain, M. Lawrence, V. Carey, S. Gogarten, P. Shannon et al., VariantAnnotation: a Bioconductor package for exploration and annotation of genetic variants, Bioinformatics, vol.30, issue.14, pp.2076-2084, 2014.
DOI : 10.1093/bioinformatics/btu168

U. Wittelsburger, B. Pfeifer, and M. Lercher, WhopGenome: high-speed access to whole-genome variation and sequence data in R, Bioinformatics, vol.31, issue.3, pp.413-418, 2015.
DOI : 10.1093/bioinformatics/btu636

M. Bach and A. Werner, Innovative control systems for tracked vehicle platforms Available from, pp.163-74978, 2014.

S. K. Gajendran, A survey on NoDQL databases University of Illinois Available from

A. Moniruzzaman and S. Hossain, Nosql database: New era of databases for big data analytics-classification, characteristics and comparison Available from, CoRR [Internet], vol.6, issue.4, pp.1-14, 2013.

O. Connor, B. Merriman, B. Nelson, and S. , SeqWare query engine: storing and searching sequence data in the cloud, S2. Available from, 2010.

S. Wang, I. Pandis, C. Wu, S. He, D. Johnson et al., High dimensional biological data retrieval optimization with NoSQL technology, S3. Available from, 2014.
DOI : 10.1186/bcr2468

B. Langmead, M. Schatz, J. Lin, M. Pop, and S. Salzberg, Searching for SNPs with cloud computing, Genome Biology, vol.10, issue.11, 2009.
DOI : 10.1186/gb-2009-10-11-r134

URL : http://doi.org/10.1186/gb-2009-10-11-r134

E. Afgan, B. Chapman, and J. Taylor, CloudMan as a platform for tool, data, and analysis distribution, BMC Bioinformatics, vol.13, issue.1, p.315, 2012.
DOI : 10.1002/cpe.1836

URL : http://doi.org/10.1186/1471-2105-13-315

M. Schatz, CloudBurst: highly sensitive read mapping with MapReduce, Bioinformatics, vol.25, issue.11, pp.1363-1372, 2009.
DOI : 10.1093/bioinformatics/btp236

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2682523

T. Russ, C. Ramakrishnan, E. Hovy, M. Bota, and G. Burns, Knowledge engineering tools for reasoning with scientific observations and interpretations: a neural connectivity use case, BMC Bioinformatics, vol.12, issue.1, p.351, 2011.
DOI : 10.1007/s12021-008-9032-z

Z. Ye and S. Li, Arequest skewaware heterogeneous distributed storage systembased on Cassandra, the International Conference on Computer and Management, pp.1-5, 2011.
DOI : 10.1109/caman.2011.5778745

G. Manyam, M. A. Payton, J. A. Roth, L. V. Abruzzo, and K. Coombes, Relax with CouchDB -Into the non-relational DBMS era of bioinformatics Available from, Genomics. Elsevier Inc, vol.2012, 2015.

H. Ohyanagi, T. Ebata, X. Huang, H. Gong, M. Fujita et al., Genome Diversity Database of Wild Oryza Species Special Online Collection ? Database Paper, pp.1-7, 2015.

N. Alexandrov, S. Tai, W. Wang, L. Mansueto, K. Palis et al., SNP-Seek database of SNPs derived from 3000 rice genomes, Nucleic Acids Research, vol.43, issue.D1, pp.2-6, 2015.
DOI : 10.1093/nar/gku1039

C. Miller, Y. Qiao, T. Disera, D. Astous, B. et al., bam.iobio: a web-based, real-time, sequence alignment file inspector, Nature Methods, vol.11, issue.12, p.1189, 2014.
DOI : 10.1093/bioinformatics/btr174

D. Sera and T. Vcf, iobio?A visually driven variant data inspector and real-time analysis web application, 2015.

M. Skinner, A. Uzilov, L. Stein, C. Mungall, and I. Holmes, JBrowse: a nextgeneration genome browser Available from: http://genome.cshlp.org/content, Genome Res, vol.1919, issue.9, pp.1630-1638, 1630.
DOI : 10.1101/gr.094607.109

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2752129

M. Inc and . Mongodb, Available from: https://www.mongodb, 2015.

P. Cingolani, A. Platts, L. Wang, M. Coon, T. Nguyen et al., A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff, Fly, vol.8, issue.2, pp.80-92, 2012.
DOI : 10.1101/gr.4086505

B. Giardine, C. Riemer, R. Hardison, R. Burhans, L. Elnitski et al., Galaxy: A platform for interactive large-scale genome analysis, Genome Research, vol.15, issue.10, pp.1451-1456, 2005.
DOI : 10.1101/gr.4086505

H. Thorvaldsdóttir, J. Robinson, and J. Mesirov, Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration, Briefings in Bioinformatics, vol.14, issue.2, pp.178-92, 2013.
DOI : 10.1093/bib/bbs017

. Pivotal-software-inc, S. Java, and . Framework, Available from, 2015.

. Highsoft and A. Highcharts, Available from: http://www.highcharts.com/ products/highcharts. Accessed, 2015.

. Oracle and . Mysql, Available from Available from: https://www.docker.com/ 41. Platform as a Service Available from: https://en.wikipedia.org/wiki/Paas 42, 2015.

G. Sempere, . Philippe, . Dereeper, M. Ruiz, . Sarah et al., Supporting information for " Gigwa -Genotype Investigator for Genome Wide Analyses " . GigaScience Database, 2016.