E. Duchene, F. Huard, V. Dumas, C. Schneider, and D. Merdinoglu, The challenge of adapting grapevine varieties to climate change, Climate Research, vol.41, issue.3, pp.193-204, 2010.
DOI : 10.3354/cr00850

L. Hannah, P. Roehrdanz, M. Ikegami, A. Shepard, M. Shaw et al., Climate change, wine, and conservation, Proceedings of the National Academy of Sciences, vol.289, issue.5477, pp.6907-6912, 2013.
DOI : 10.1126/science.289.5477.284

URL : http://www.pnas.org/content/110/17/6907.full.pdf

C. Leeuwen, H. Schultz, G. De-cortazar-atauri, I. Duchêne, E. Ollat et al., Why climate change will not dramatically decrease viticultural suitability in main wine-producing areas by 2050, Proceedings of the National Academy of Sciences, vol.73, issue.17, pp.3051-3052, 2013.
DOI : 10.1007/s10584-005-4704-2

URL : https://hal.archives-ouvertes.fr/hal-00856345

F. Silva, A. Iandolino, F. Bohlmann, M. Cushman, M. Lim et al., Characterizing the Grape Transcriptome. Analysis of Expressed Sequence Tags from Multiple Vitis Species and Development of a Compendium of Gene Expression during Berry Development, PLANT PHYSIOLOGY, vol.139, issue.2, pp.574-597, 2005.
DOI : 10.1104/pp.105.065748

J. Bowers, J. Boursiquot, P. This, K. Chu, H. Johansson et al., Historical Genetics: The Parentage of Chardonnay, Gamay, and Other Wine Grapes of Northeastern France, Science, vol.285, issue.5433, pp.1562-1565, 1999.
DOI : 10.1126/science.285.5433.1562

M. Pindo, S. Vezzulli, G. Coppola, D. Cartwright, A. Zharkikh et al., SNP high-throughput screening in grapevine using the SNPlex??? genotyping system, BMC Plant Biology, vol.8, issue.1, p.12, 2008.
DOI : 10.1186/1471-2229-8-12

S. Myles, A. Boyko, C. Owens, P. Brown, F. Grassi et al., Genetic structure and domestication history of the grape, Proceedings of the National Academy of Sciences, vol.178, issue.2, pp.3530-3535, 2011.
DOI : 10.1534/genetics.107.080101

A. Doligez, A. Bouquet, Y. Danglot, F. Lahogue, S. Riaz et al., Genetic mapping of grapevine (Vitis vinifera L.) applied to the detection of QTLs for seedlessness and berry weight, Theor Appl Genet, vol.105, pp.780-795, 2002.

E. Marguerit, O. Brendel, E. Lebon, C. Van-leeuwen, and N. Ollat, Rootstock control of scion transpiration and its acclimation to water deficit are controlled by different genes, New Phytologist, vol.102, issue.Suppl 1, pp.416-429, 2012.
DOI : 10.1073/pnas.0503960102

URL : https://hal.archives-ouvertes.fr/hal-01267814

L. Deluc, J. Grimplet, M. Wheatley, R. Tillett, D. Quilici et al., Transcriptomic and metabolite analyses of Cabernet Sauvignon grape berry development, BMC Genomics, vol.8, issue.1, p.429, 2007.
DOI : 10.1186/1471-2164-8-429

M. Polesani, L. Bortesi, A. Ferrarini, A. Zamboni, M. Fasoli et al., General and species-specific transcriptional responses to downy mildew infection in a susceptible (Vitis vinifera) and a resistant (V. riparia) grapevine species, BMC Genomics, vol.11, issue.1, p.117, 2007.
DOI : 10.1186/1471-2164-11-117

O. Jaillon, J. Aury, B. Noel, A. Policriti, C. Clepet et al., The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla, Nature, vol.147, issue.7161, pp.463-468, 2007.
DOI : 10.1016/0022-2836(81)90087-5

URL : https://hal.archives-ouvertes.fr/inria-00180136

A. Zamboni, D. Carli, M. Guzzo, F. Stocchero, M. Zenoni et al., Identification of Putative Stage-Specific Grapevine Berry Biomarkers and Omics Data Integration into Networks, PLANT PHYSIOLOGY, vol.154, issue.3, pp.1439-1459, 2010.
DOI : 10.1104/pp.110.160275

S. Zenoni, A. Ferrarini, E. Giacomelli, L. Xumerle, M. Fasoli et al., Characterization of Transcriptional Complexity during Berry Development in Vitis vinifera Using RNA-Seq, PLANT PHYSIOLOGY, vol.152, issue.4, pp.1787-1795, 2010.
DOI : 10.1104/pp.109.149716

M. Fasoli, D. Santo, S. Zenoni, S. Tornielli, G. Farina et al., The Grapevine Expression Atlas Reveals a Deep Transcriptome Shift Driving the Entire Plant into a Maturation Program, The Plant Cell, vol.24, issue.9, pp.3489-3505, 2012.
DOI : 10.1105/tpc.112.100230

S. Myles, J. Chia, B. Hurwitz, C. Simon, G. Zhong et al., Rapid Genomic Characterization of the Genus Vitis, PLoS ONE, vol.5, issue.1, p.8219, 2010.
DOI : 10.1371/journal.pone.0008219.s008

C. Silva, G. Zamperin, A. Ferrarini, A. Minio, A. Dal-molin et al., The High Polyphenol Content of Grapevine Cultivar Tannat Berries Is Conferred Primarily by Genes That Are Not Shared with the Reference Genome, The Plant Cell, vol.25, issue.12, pp.4777-4788, 2013.
DOI : 10.1105/tpc.113.118810

D. Genova, A. Almeida, A. Munoz-espinoza, C. Vizoso, P. Travisany et al., Whole genome comparison between table and wine grapes reveals a comprehensive catalog of structural variants, BMC Plant Biology, vol.14, issue.1, p.7, 2014.
DOI : 10.1007/s00122-011-1633-5

A. Doligez, E. Audiot, R. Baumes, and P. This, QTLs for muscat flavor and monoterpenic odorant content in grapevine (Vitis vinifera L.), Molecular Breeding, vol.37, issue.2, pp.109-125, 2006.
DOI : 10.17660/ActaHortic.2004.652.58

A. Fournier-level, L. Cunff, L. Gomez, C. Doligez, A. Ageorges et al., Quantitative Genetic Bases of Anthocyanin Variation in Grape (Vitis vinifera L. ssp. sativa) Berry: A Quantitative Trait Locus to Quantitative Trait Nucleotide Integrated Study, Genetics, vol.183, issue.3, pp.1127-1139, 2009.
DOI : 10.1534/genetics.109.103929

A. Coupel-ledru, E. Lebon, C. A. Doligez, A. Cabrera-bosquet, L. Péchier et al., Genetic variation in a grapevine progeny (Vitis vinifera L. cvs Grenache??Syrah) reveals inconsistencies between maintenance of daytime leaf water potential and response of transpiration rate under drought, Journal of Experimental Botany, vol.65, issue.21, pp.6205-6218, 2012.
DOI : 10.1093/jxb/eru228

URL : https://hal.archives-ouvertes.fr/hal-01054469

M. Wilkinson, M. Dumontier, I. Aalbersberg, G. Appleton, M. Axton et al., The FAIR Guiding Principles for scientific data management and stewardship, Scientific Data, vol.22, issue.2012, p.160018, 2016.
DOI : 10.7717/peerj-cs.1

URL : http://www.nature.com/articles/sdata201618.pdf

B. Fecher and H. Friesike, What drives academic data sharing?, PLoS One, vol.10, p.118053, 2015.
DOI : 10.2139/ssrn.2439645

URL : http://www.econstor.eu/bitstream/10419/96241/1/783721773.pdf

J. Grimplet, A. Adam-blondon, P. Bert, O. Bitz, D. Cantu et al., The grapevine gene nomenclature system, BMC Genomics, vol.15, issue.1, p.1077, 2014.
DOI : 10.1016/0014-5793(90)80961-H

URL : https://hal.archives-ouvertes.fr/hal-01128546

M. Spannagl, M. Alaux, M. Lange, D. Bolser, K. Bader et al., transPLANT Resources for Triticeae Genomic Data, The Plant Genome, vol.9, issue.1, p.13, 2016.
DOI : 10.3835/plantgenome2015.06.0038

URL : https://dl.sciencesocieties.org/publications/tpg/pdfs/9/1/plantgenome2015.06.0038

Z. Stephens, S. Lee, F. Faghri, R. Campbell, C. Zhai et al., Big Data: Astronomical or Genomical?, PLOS Biology, vol.28, issue.7, p.1002195, 2015.
DOI : 10.1371/journal.pbio.1002195.s006

URL : http://doi.org/10.1371/journal.pbio.1002195

J. Medina-aunon, S. Martínez-bartolome, M. Lopez-garcía, E. Salazar, R. Navajas et al., The ProteoRed MIAPE web toolkit: a user-friendly framework to connect and share proteomics standards, Mol Cell Proteomics, vol.10, pp.111-008334, 2011.

R. Salek, C. Steinbeck, M. Viant, R. Goodacre, and W. Dunn, The role of reporting standards for metabolite annotation and identification in metabolomic studies, GigaScience, vol.2, issue.1, p.13, 2013.
DOI : 10.1186/2047-217X-2-13

R. Swaminathan, Y. Huang, S. Moosavinasab, R. Buckley, C. Bartlett et al., A Review on Genomics APIs, Computational and Structural Biotechnology Journal, vol.14, pp.8-15, 2016.
DOI : 10.1016/j.csbj.2015.10.004

URL : http://doi.org/10.1016/j.csbj.2015.10.004

D. Ayres, A. Darling, D. Zwickl, P. Beerli, M. Holder et al., BEAGLE: An Application Programming Interface and High-Performance Computing Library for Statistical Phylogenetics, Systematic Biology, vol.61, issue.1, pp.170-173, 2012.
DOI : 10.1093/sysbio/syr100

URL : https://academic.oup.com/sysbio/article-pdf/61/1/170/4712375/syr100.pdf

M. Moretto, P. Sonego, S. Pilati, G. Malacarne, L. Costantini et al., VESPUCCI: Exploring Patterns of Gene Expression in Grapevine, Frontiers in Plant Science, vol.2015, issue.bav002, p.633, 2016.
DOI : 10.1093/database/bav002

A. Brazma, P. Hingamp, J. Quackenbush, G. Sherlock, P. Spellman et al., Minimum information about a microarray experiment (MIAME)-toward standards for microarray data, Nature Genetics, vol.29, issue.4, pp.365-371, 2001.
DOI : 10.1038/ng1201-365

URL : http://doi.org/10.1100/tsw.2009.57

C. Taylor, N. Paton, K. Lilley, P. Binz, R. Julian et al., The minimum information about a proteomics experiment (MIAPE), Nature Biotechnology, vol.25, issue.8, pp.887-893, 2007.
DOI : 10.1038/nbt1329

R. Goodacre, D. Broadhurst, A. Smilde, B. Kristal, J. Baker et al., Proposed minimum reporting standards for data analysis in metabolomics, Metabolomics, vol.68, issue.13, pp.231-241, 2007.
DOI : 10.1017/CBO9780511812651

P. Krajewski, D. Chen, H. Cwiek, A. Van-dijk, F. Fiorani et al., Towards recommendations for metadata and data handling in plant phenotyping, Journal of Experimental Botany, vol.66, issue.18
DOI : 10.1093/jxb/erv271

A. González-beltrán, E. Maguire, S. Sansone, and P. Rocca-serra, linkedISA: semantic representation of ISA-Tab experimental metadata, BMC Bioinformatics, vol.15, issue.Suppl 14, p.4, 2014.
DOI : 10.1016/j.cmpb.2013.04.009

A. Brazma, Minimum Information About a Microarray Experiment (MIAME) ??? Successes, Failures, Challenges, The Scientific World JOURNAL, vol.9, pp.420-423, 2009.
DOI : 10.1100/tsw.2009.57

URL : http://doi.org/10.1100/tsw.2009.57

S. Nicolas, J. Péros, T. Lacombe, A. Launay, L. Paslier et al., Genetic diversity, linkage disequilibrium and power of a large grapevine (Vitis vinifera L) diversity panel newly designed for association studies, BMC Plant Biology, vol.9, issue.3, p.74, 2016.
DOI : 10.1371/journal.pone.0110436

URL : https://hal.archives-ouvertes.fr/inserm-01322529

S. Venuti, D. Copetti, S. Foria, L. Falginella, S. Hoffmann et al., Historical Introgression of the Downy Mildew Resistance Gene Rpv12 from the Asian Species Vitis amurensis into Grapevine Varieties, PLoS ONE, vol.108, issue.4, p.61228, 2013.
DOI : 10.1371/journal.pone.0061228.s009

E. Gotor, A. Alercia, V. Rao, J. Watts, and F. Caracciolo, The scientific information activity of Bioversity International: the descriptor lists, Genetic Resources and Crop Evolution, vol.3, issue.3, pp.757-772, 2008.
DOI : 10.1007/s10722-008-9342-x

K. Ilic, E. Kellogg, P. Jaiswal, F. Zapata, P. Stevens et al., The Plant Structure Ontology, a Unified Vocabulary of Anatomy and Morphology of a Flowering Plant, PLANT PHYSIOLOGY, vol.143, issue.2, pp.587-599, 2007.
DOI : 10.1104/pp.106.092825

M. Ashburner, C. Ball, J. Blake, D. Botstein, H. Butler et al., Gene Ontology: tool for the unification of biology, Nature Genetics, vol.9, issue.1, pp.25-29, 2000.
DOI : 10.1091/mbc.9.12.3273

M. Fahy, E. Cotter, D. Azam, K. Vadivelu, I. Burant et al., Metabolomics Workbench: an international repository for metabolomics data and metadata, metabolite standards, protocols, tutorials and training, and analysis tools, Nucleic Acids Res, vol.44, pp.463-470, 2016.

S. Naithani, R. Raja, E. Waddell, J. Elser, S. Gouthu et al., VitisCyc: a metabolic pathway knowledgebase for grapevine (Vitis vinifera), Frontiers in Plant Science, vol.12, issue.198, p.644, 2014.
DOI : 10.1186/1471-2229-12-185

URL : http://journal.frontiersin.org/article/10.3389/fpls.2014.00644/pdf

P. Hornbeck, B. Zhang, B. Murray, J. Kornhauser, V. Latham et al., PhosphoSitePlus, 2014: mutations, PTMs and recalibrations, Nucleic Acids Research, vol.43, issue.D1, pp.512-520, 2015.
DOI : 10.1093/nar/gku1267

URL : https://academic.oup.com/nar/article-pdf/43/D1/D512/17437800/gku1267.pdf

E. Maul, K. Sudharma, S. Kecke, G. Marx, C. Muller et al., The European Vitis Database (www.eu-vitis.de)?a technical innovation through an online uploading and interactive modification system, Vitis, vol.51, pp.79-85, 2012.
URL : https://hal.archives-ouvertes.fr/hal-01267795

D. Steinbach, M. Alaux, J. Amselem, N. Choisne, S. Durand et al., GnpIS: an information system to integrate genetic and genomic data from plants and fungi, Database, vol.2013, issue.0, p.58, 2013.
DOI : 10.1093/database/bat058

URL : https://academic.oup.com/database/article-pdf/doi/10.1093/database/bat058/16733878/bat058.pdf

E. Toepfer and R. , Vitis International Variety Catalogue (VIVC): A cultivar database referenced by genetic profiles and morphology, BIO Web of Conferences, vol.5, p.1009, 2015.

M. Tello-ruiz, J. Stein, S. Wei, J. Preece, A. Olson et al., Gramene 2016: comparative plant genomics and pathway resources, Nucleic Acids Research, vol.44, issue.D1, pp.1133-1140, 2016.
DOI : 10.1093/nar/gkv1179

URL : https://academic.oup.com/nar/article-pdf/44/D1/D1133/16661591/gkv1179.pdf

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