P. Biller, C. Knibbe, L. Guéguen, and E. Tannier, Breaking good: accounting for the diversity of fragile regions for estimating rearrangement distances

G. Fertin, G. Jean, and E. Tannier, Genome Rearrangements on Both Gene Order and Intergenic Regions, WABI 2016, pp.162-73, 2016.
DOI : 10.1007/978-3-319-43681-4_13

URL : https://hal.archives-ouvertes.fr/hal-01334942

M. Braga, M. Sagot, C. Scornavacca, and E. Tannier, Exploring the Solution Space of Sorting by Reversals, with Experiments and an Application to Evolution, IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol.5, issue.3, pp.348-56, 2008.
DOI : 10.1109/TCBB.2008.16

URL : https://hal.archives-ouvertes.fr/hal-00428206

M. Braga and J. Stoye, The Solution Space of Sorting by DCJ, Journal of Computational Biology, vol.17, issue.9, pp.1145-65, 2010.
DOI : 10.1089/cmb.2010.0109

Y. Diekmann, M. Sagot, and E. Tannier, Evolution under Reversals: Parsimony and Conservation of Common Intervals, IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol.4, issue.2, pp.301-310, 2007.
DOI : 10.1109/TCBB.2007.1042

URL : https://hal.archives-ouvertes.fr/hal-00434588

C. Baudet, U. Dias, and Z. Dias, Length and Symmetry on the Sorting by Weighted Inversions Problem, In: Advances in Bioinformatics and Computational Biology Lecture Notes in Computer Science, vol.8826, issue.14, pp.99-106, 2014.
DOI : 10.1007/978-3-319-12418-6_13

URL : https://hal.archives-ouvertes.fr/hal-01092607

K. Swenson and M. Blanchette, Models and algorithms for genome rearrangement with positional constraints In: Algorithms in Bioinformatics -15th International Workshop, Proceedings, pp.243-56, 2015.

P. Biller, L. Guéguen, and E. Tannier, Moments of genome evolution by Double Cut-and-Join, BMC Bioinformatics, vol.16, issue.Suppl 14, p.7, 2015.
DOI : 10.1186/1471-2105-16-S14-S7

URL : https://hal.archives-ouvertes.fr/hal-01179597

S. Yancopoulos, O. Attie, and R. Friedberg, Efficient sorting of genomic permutations by translocation, inversion and block interchange, Bioinformatics, vol.21, issue.16, pp.3340-346, 2005.
DOI : 10.1093/bioinformatics/bti535

P. Pevzner and G. Tesler, Human and mouse genomic sequences reveal extensive breakpoint reuse in mammalian evolution, Proceedings of the National Academy of Sciences, vol.100, issue.13, pp.7672-677, 2003.
DOI : 10.1073/pnas.1330369100

O. Attie, A. Darling, and S. Yancopoulos, The rise and fall of breakpoint reuse depending on genome resolution, BMC Bioinformatics, vol.12, issue.Suppl 9, 2011.
DOI : 10.1186/1471-2148-6-90