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Compacting de Bruijn graphs from sequencing data quickly and in low memory

Rayan Chikhi 1 Antoine Limasset 2 Paul Medvedev 3
1 BONSAI - Bioinformatics and Sequence Analysis
Université de Lille, Sciences et Technologies, Inria Lille - Nord Europe, CRIStAL - Centre de Recherche en Informatique, Signal et Automatique de Lille (CRIStAL) - UMR 9189, CNRS - Centre National de la Recherche Scientifique
2 GenScale - Scalable, Optimized and Parallel Algorithms for Genomics
Inria Rennes – Bretagne Atlantique , IRISA-D7 - GESTION DES DONNÉES ET DE LA CONNAISSANCE
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Journal articles
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https://hal.archives-ouvertes.fr/hal-01395704
Contributor : Rayan Chikhi <>
Submitted on : Friday, November 11, 2016 - 1:29:46 PM
Last modification on : Thursday, December 19, 2019 - 1:30:39 AM

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Rayan Chikhi, Antoine Limasset, Paul Medvedev. Compacting de Bruijn graphs from sequencing data quickly and in low memory. Bioinformatics, Oxford University Press (OUP), 2016, 32 (12), pp.i201 - i208. ⟨10.1093/bioinformatics/btw279⟩. ⟨hal-01395704⟩

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