New insights on classification, identification, and clinical relevance of Blastocystis spp, Clin. Microbiol. Rev, vol.21, pp.639-665, 2008. ,
Recent developments in Blastocystis research, Adv. Parasitol, vol.82, pp.1-32, 2013. ,
, Scientific RepoRts |, vol.6
Diagnosis and subtype analysis of Blastocystis sp. in 442 patients in a hospital setting in the Netherlands, BMC Infect. Dis, vol.13, p.389, 2013. ,
Blastocystis, an unrecognized parasite: an overview of pathogenesis and diagnosis, Ther. Adv. Infect. Dis, vol.1, pp.167-178, 2013. ,
URL : https://hal.archives-ouvertes.fr/hal-01071806
Children of Senegal River Basin show the highest prevalence of Blastocystis sp. ever observed worldwide, BMC Infect. Dis, vol.14, p.164, 2014. ,
URL : https://hal.archives-ouvertes.fr/inserm-00981310
Oh my aching gut: irritable bowel syndrome, Blastocystis, and asymptomatic infection, Parasit. Vectors, vol.1, p.40, 2008. ,
Current views on the clinical relevance of Blastocystis spp, Curr. Infect. Dis. Rep, vol.12, pp.28-35, 2010. ,
New insights into Blastocystis spp.: A potential link with irritable bowel syndrome, PLos Pathog, vol.8, p.1002545, 2012. ,
URL : https://hal.archives-ouvertes.fr/hal-00814144
Blastocystis: Past pitfalls and future perspectives, Trends Parasitol, vol.28, pp.327-334, 2012. ,
Genome sequence of the stramenopile Blastocystis, a human anaerobic parasite, Genome Biol, vol.12, p.29, 2011. ,
URL : https://hal.archives-ouvertes.fr/inserm-00617212
Characterization of two cysteine proteases secreted by Blastocystis ST7, a human intestinal parasite, Parasitol. Int, vol.61, pp.437-442, 2012. ,
URL : https://hal.archives-ouvertes.fr/hal-00814173
Draft genome sequence of the intestinal parasite Blastocystis subtype 4-isolate WR1, Genom. Data, vol.4, pp.22-23, 2015. ,
URL : https://hal.archives-ouvertes.fr/hal-01247485
Differential regulation of proinflammatory cytokine expression by mitogen-activated protein kinases in macrophages in response to intestinal parasite infection, Infect. Immun, vol.82, pp.4789-4801, 2014. ,
Intra-subtype variation in enteroadhesion accounts for differences in epithelial barrier disruption and is associated with metronidazole resistance in Blastocystis subtype-7, PLos Negl. Trop. Dis, vol.8, pp.27-31, 2014. ,
Strain-dependent induction of human enterocyte apoptosis by Blastocystis disrupts epithelial barrier and ZO-1 organization in a caspase 3-and 9-dependent manner, Biomed Res. Int, p.209163, 2014. ,
Micro-eukaryotic diversity of the human distal gut microbiota: qualitative assessment using culturedependent and -independent analysis of faeces, ISME J, vol.2, pp.1183-1193, 2008. ,
The microbial eukaryote Blastocystis is a prevalent and diverse member of the healthy human gut microbiota, FEMS Microbiol. Ecol, vol.90, pp.326-330, 2014. ,
Active ulcerative colitis associated with low prevalence of Blastocystis and Dientamoeba fragilis infection, Scand. J. Gastroenterol, vol.48, pp.638-639, 2013. ,
The prevalence of intestinal parasites is not greater among individuals with irritable bowel syndrome: a population-based case-control study, Clin. Gastroenterol. Hepatol, vol.13, pp.507-513, 2015. ,
Low prevalence of Blastocystis sp. in active ulcerative colitis patients, Eur. J. Clin. Microbiol. Infect. Dis, vol.34, pp.1039-1044, 2015. ,
The gut microbiota in IBD, Nat. Rev. Gastroenterol. Hepatol, vol.9, pp.599-608, 2012. ,
Dysbiosis of the intestinal microbiota in IBS in Current concepts in colonic disorders, pp.261-276, 2012. ,
Emerging insights on intestinal dysbiosis during bacterial infections, Curr. Opin. Microbiol, vol.17, pp.67-74, 2014. ,
Parasite-induced TH1 cells and intestinal dysbiosis cooperate in IFN-? -dependent elimination of Paneth cells, Nat. Immunol, vol.14, pp.136-142, 2013. ,
Influence of bacteria from the duodenal microbiota of patients with symptomatic giardiasis on the pathogenicity of Giardia duodenalis in gnotoxenic mice, J. Med. Microbiol, vol.49, pp.209-215, 2000. ,
The interplay between Entamoeba and enteropathogenic bacteria modulates epithelial cell damage, PLos Negl. Trop. Dis, vol.2, p.266, 2008. ,
Real-time analysis of gut flora in Entamoeba histolytica infected patients of Northern India, BMC Microbiol, vol.12, p.183, 2012. ,
An evaluation of the accuracy and speed of metagenome analysis tools, Sci. Rep, vol.6, p.19233, 2015. ,
How many 16S-based studies should be included in a metagenomic conference? It may be a matter of etymology, FEMS Microbiol. Lett, vol.351, pp.145-146, 2014. ,
STAMP: Statistical analysis of taxonomic and functional profiles, Bioinformatics, vol.30, pp.3123-3124, 2014. ,
Commensal Clostridia: leading players in the maintenance of gut homeostasis, Gut Pathog, vol.5, p.23, 2013. ,
Blastocystis is associated with decrease of fecal microbiota protective bacteria: comparative analysis between patients with irritable bowel syndrome and control subjects, PLos One, vol.9, p.111868, 2014. ,
URL : https://hal.archives-ouvertes.fr/hal-01111985
A retrospective metagenomics approach to studying Blastocystis, FEMS Microbiol. Ecol, vol.91, p.72, 2015. ,
Intestinal dysbiosis associated with systemic lupus erythematosus, MBio, vol.5, pp.1548-1562, 2014. ,
Assessing the fecal microbiota: an optimized Ion Torrent 16S rRNA gene-based analysis protocol, PLos One, vol.8, p.68739, 2013. ,
URL : https://hal.archives-ouvertes.fr/hal-01190517
Why related bacterial species bloom simultaneously in the gut: Principles underlying the 'like will to like' concept, Cell. Microbiol, vol.16, pp.179-184, 2014. ,
Role of commensal gut bacteria in inflammatory bowel diseases, Gut Microbes, vol.3, pp.544-555, 2012. ,
Commensal bacteria at the interface of host metabolism and the immune system, Nat. Immunol, vol.14, pp.676-684, 2013. ,
Review article: The role of butyrate on colonic function, Aliment. Pharmacol. Ther, vol.27, pp.104-119, 2008. ,
The role of short-chain fatty acids in health and disease, Adv. Immunol, vol.121, pp.91-119, 2014. ,
A decrease of the butyrate-producing species Roseburia hominis and Faecalibacterium prausnitzii defines dysbiosis in patients with ulcerative colitis, Gut, vol.63, pp.1275-1283, 2013. ,
Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients, Proc. Natl. Acad. Sci. USA 105, pp.16731-16736, 2008. ,
URL : https://hal.archives-ouvertes.fr/hal-00652961
Blastocystis: getting to grips with our guileful guest, Trends Parasitol, vol.29, pp.523-529, 2013. ,
Therapeutic helminth infection of macaques with idiopathic chronic diarrhea alters the inflammatory signature and mucosal microbiota of the colon, PLos Pathog, vol.8, p.1003000, 2012. ,
Helminth colonization is associated with increased diversity of the gut microbiota, PLos Negl. Trop. Dis, vol.8, p.2880, 2014. ,
Impact of experimental hookworm infection on the human gut microbiota, J. Infect. Dis, vol.210, pp.1-4, 2014. ,
Self-) infections with parasites: re-interpretations for the present, Trends Parasitol, vol.30, pp.377-385, 2014. ,
, Scientific RepoRts |, vol.6
A guide to enterotypes across the human body: meta-analysis of microbial community structures in human microbiome datasets, PLos Comput. Biol, vol.9, p.1002863, 2013. ,
Rethinking 'enterotypes', Cell Host Microbe, vol.16, pp.433-437, 2014. ,
Development and evaluation of a real-time PCR assay for detection and quantification of Blastocystis parasites in human stool samples: Prospective study of patients with hematological malignancies, J. Clin. Microbiol, vol.49, pp.975-983, 2011. ,
URL : https://hal.archives-ouvertes.fr/hal-00825471
R: A language and environment for statistical computing. R Foundation for Statistical Computing, 2013. ,
Quantitative real-time PCR using TaqMan and SYBR Green for Actinobacillus actinomycetemcomitans, Porphyromonas gingivalis, Prevotella intermedia, tetQ gene and total bacteria, FEMS Immunol. Med. Microbiol, vol.39, pp.81-86, 2003. ,
Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities, Appl. Environ. Microbiol, vol.75, pp.7537-7541, 2009. ,
Hierarchical clustering analysis of millions of 16S rRNA pyrosequences in quasilinear computational time, Nucleic Acids Res, vol.39, p.95, 2011. ,
Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences, Genome Biol, vol.11, p.86, 2010. ,
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools, Nucleic Acids Res, vol.41, pp.590-596, 2013. ,
Naïve Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy, Appl. Environ. Microbiol, vol.73, pp.5261-5267, 2007. ,
The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome, Gigascience, vol.1, p.7, 2012. ,
Moderated estimation of fold change and dispersion for RNA-Seq data with DESeq2, Genome Biol, vol.15, p.550, 2014. ,
QIIME allows analysis of high-throughput community sequencing data, Nat. methods, vol.7, pp.335-336, 2010. ,
Waste not, want not: why rarefying microbiome data is inadmissible, PLos Comput. Biol, vol.10, p.1003531, 2014. ,
FactoMineR : An R package for multivariate analysis, J. Stat. Softw, vol.25, pp.1-18, 2008. ,
, Scientific RepoRts |, vol.6
, Consortia The Blastocystis Investigation Group
, Philippe Poirier 7,8 , Ivan Wawrzyniak 8 , Frédéric Delbac 8 , Christelle Morelle 9, Guillaume Desoubeaux, vol.7, p.17
, Centre AZM pour la Recherche en Biotechnologies et ses applications
11 Laboratoire de Parasitologie-Mycologie, vol.13 ,
, Groupe Hospitalier Pellegrin