Molecular Pathogenesis of Infections Caused by Legionella pneumophila, Clinical Microbiology Reviews, vol.23, issue.2, pp.274-298, 2010. ,
DOI : 10.1128/CMR.00052-09
Species and Serogroups Isolated by Culture in Patients with Sporadic Community???Acquired Legionellosis: An International Collaborative Survey, The Journal of Infectious Diseases, vol.186, issue.1, pp.127-128, 2002. ,
DOI : 10.1086/341087
Clinical and Environmental Distributions of Legionella Strains in France Are Different, Journal of Clinical Microbiology, vol.42, issue.1, pp.458-460, 2004. ,
DOI : 10.1128/JCM.42.1.458-460.2004
The occurrence of Legionella species other than Legionella pneumophila in clinical and environmental samples in Denmark identified by mip gene sequencing and matrix-assisted laser desorption ionization time-of-flight mass spectrometry, Clinical Microbiology and Infection, vol.18, issue.10, pp.1004-1009, 2012. ,
DOI : 10.1111/j.1469-0691.2011.03698.x
Comparative assessment of virulence traits in Legionella spp., Microbiology, vol.149, issue.3, pp.631-641, 2003. ,
DOI : 10.1099/mic.0.25980-0
Dictyostelium discoideum: a new host model system for intracellular pathogens of the genus Legionella, Cellular Microbiology, vol.63, issue.2, pp.135-171, 2000. ,
DOI : 10.1126/science.279.5352.873
Evidence in the Legionella pneumophila genome for exploitation of host cell functions and high genome plasticity, Nature Genetics, vol.67, issue.11, pp.1165-1173, 2004. ,
DOI : 10.1093/bioinformatics/btg490
The Genomic Sequence of the Accidental Pathogen Legionella pneumophila, Science, vol.305, issue.5692, pp.1966-1968, 2004. ,
DOI : 10.1126/science.1099776
Analysis of the Legionella longbeachae Genome and Transcriptome Uncovers Unique Strategies to Cause Legionnaires' Disease, PLoS Genetics, vol.326, issue.2, p.1000851, 2010. ,
DOI : 10.1371/journal.pgen.1000851.s015
Virulence Factors Encoded by Legionella longbeachae Identified on the Basis of the Genome Sequence Analysis of Clinical Isolate D-4968, Journal of Bacteriology, vol.192, issue.4, pp.1030-1044, 2010. ,
DOI : 10.1128/JB.01272-09
Legionella pneumophila pangenome reveals strain-specific virulence factors, BMC Genomics, vol.11, issue.1, p.181, 2010. ,
DOI : 10.1186/1471-2164-11-181
Extensive recombination events and horizontal gene transfer shaped the Legionella pneumophila genomes, BMC Genomics, vol.16, issue.7, p.536, 2011. ,
DOI : 10.1186/1471-2164-12-536
URL : https://hal.archives-ouvertes.fr/pasteur-00642457
Legionella pneumophila Strain 130b Possesses a Unique Combination of Type IV Secretion Systems and Novel Dot/Icm Secretion System Effector Proteins, Journal of Bacteriology, vol.192, issue.22, pp.6001-6016, 2010. ,
DOI : 10.1128/JB.00778-10
Legionella pathogenicity: Genome structure, regulatory networks and the host cell response, International Journal of Medical Microbiology, vol.297, issue.7-8, pp.577-587, 2007. ,
DOI : 10.1016/j.ijmm.2007.03.009
Legionella oakridgensis ATCC 33761 genome sequence and phenotypic characterization reveals its replication capacity in amoebae, International Journal of Medical Microbiology, vol.303, issue.8, pp.514-528, 2013. ,
DOI : 10.1016/j.ijmm.2013.07.003
Second serogroup of Legionella hackeliae isolated from a patient with pneumonia, J Clin Microbiol, vol.22, pp.488-489, 1985. ,
Phylogenetic diversity of intra-amoebal legionellae as revealed by 16S rRNA gene sequence comparison, Microbiology, vol.142, issue.12, pp.3525-3530, 1996. ,
DOI : 10.1099/13500872-142-12-3525
Influence of Acanthamoeba castellanii on Intracellular Growth of Different Legionella Species in Human Monocytes, Applied and Environmental Microbiology, vol.66, issue.3, pp.914-919, 2000. ,
DOI : 10.1128/AEM.66.3.914-919.2000
The amoebae plate test implicates a paralogue of lpxB in the interaction of Legionella pneumophila with Acanthamoeba castellanii, Microbiology, vol.151, issue.1, pp.167-182, 2005. ,
DOI : 10.1099/mic.0.27563-0
Quantifying Nonvertical Inheritance in the Evolution of Legionella pneumophila, Molecular Biology and Evolution, vol.28, issue.2, pp.985-1001, 2011. ,
DOI : 10.1093/molbev/msq278
Analysis of the genetic diversity of Legionella by sequencing the 23S-5S ribosomal intergenic spacer region: from phylogeny to direct identification of isolates at the species level from clinical specimens, Microbes and Infection, vol.8, issue.1, pp.73-83, 2006. ,
DOI : 10.1016/j.micinf.2005.05.022
Phylogenetic relationships and species differentiation of 39 Legionella species by sequence determination of the RNase P RNA gene rnpB, INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, vol.55, issue.5, pp.2039-2049, 2005. ,
DOI : 10.1099/ijs.0.63656-0
Legionella-Like Amebal Pathogens??????Phylogenetic Status and Possible Role in Respiratory Disease, Emerging Infectious Diseases, vol.2, issue.3, pp.225-230, 1996. ,
DOI : 10.3201/eid0203.960311
Legionella drozanskii sp. nov., Legionella rowbothamii sp. nov. and Legionella fallonii sp. nov.: three unusual new Legionella species, INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, vol.51, issue.3, pp.1151-1160, 2001. ,
DOI : 10.1099/00207713-51-3-1151
Topology of Legionella pneumophila DotA: an inner membrane protein required for replication in macrophages, Infect Immun, vol.65, pp.571-578, 1997. ,
Altered intracellular targeting properties associated with mutations in the Legionella pneumophila dotA gene, Molecular Microbiology, vol.61, issue.4, pp.809-822, 1994. ,
DOI : 10.1016/0378-1119(85)90120-9
IcmS-dependent translocation of SdeA into macrophages by the Legionella pneumophila type IV secretion system, Molecular Microbiology, vol.1, issue.1, pp.90-103, 2005. ,
DOI : 10.1111/j.1365-2958.2005.04539.x
A Bacterial Guanine Nucleotide Exchange Factor Activates ARF on Legionella Phagosomes, Science, vol.295, issue.5555, pp.679-682, 2002. ,
DOI : 10.1126/science.1067025
A Specific Genomic Location within the icm/dot Pathogenesis Region of Different Legionella Species Encodes Functionally Similar but Nonhomologous Virulence Proteins, Infection and Immunity, vol.72, issue.8, pp.4503-4511, 2004. ,
DOI : 10.1128/IAI.72.8.4503-4511.2004
Coevolution between nonhomologous but functionally similar proteins and their conserved partners in the Legionella pathogenesis system, Proceedings of the National Academy of Sciences, vol.102, issue.34, pp.12206-12211, 2005. ,
DOI : 10.1073/pnas.0501850102
Multiple substrates of the Legionella pneumophila Dot/Icm system identified by interbacterial protein transfer, Proceedings of the National Academy of Sciences, vol.101, issue.3, pp.841-846, 2004. ,
DOI : 10.1073/pnas.0304916101
Functional Similarities between the icm/dot Pathogenesis Systems of Coxiella burnetii and Legionella pneumophila, Infection and Immunity, vol.71, issue.7, pp.3714-3723, 2003. ,
DOI : 10.1128/IAI.71.7.3714-3723.2003
biofilm formation: critical role of cellulose, Molecular Microbiology, vol.39, issue.3, pp.793-808, 2002. ,
DOI : 10.1046/j.1365-2958.2002.02802.x
The multicellular morphotypes of Salmonella typhimurium and Escherichia coli produce cellulose as the second component of the extracellular matrix, Molecular Microbiology, vol.32, issue.6, pp.1452-1463, 2001. ,
DOI : 10.1093/glycob/9.1.31
Hopanoids Play a Role in Membrane Integrity and pH Homeostasis in Rhodopseudomonas palustris TIE-1, Journal of Bacteriology, vol.191, issue.19, pp.6145-6156, 2009. ,
DOI : 10.1128/JB.00460-09
Sterols in microorganisms, Applied Microbiology and Biotechnology, vol.60, issue.5, pp.495-506, 2003. ,
DOI : 10.1007/s00253-002-1172-8
Hopanoid Production Is Required for Low-pH Tolerance, Antimicrobial Resistance, and Motility in Burkholderia cenocepacia, Journal of Bacteriology, vol.193, issue.23, pp.6712-6723, 2011. ,
DOI : 10.1128/JB.05979-11
Biotransformation of Chitin to Chitosan. United States Patent 5739015, 1998. ,
Characterization of Chitin Synthases from Entamoeba, Protist, vol.155, issue.3, pp.323-330, 2004. ,
DOI : 10.1078/1434461041844204
Temperate Legionella bacteriophage: discovery and characteristics, Zh Mikrobiol Epidemiol Immunobiol, vol.4, pp.86-88, 2008. ,
Evidence for the Presence of Legionella Bacteriophages in Environmental Water Samples, Microbial Ecology, vol.33, issue.1, pp.191-197, 2008. ,
DOI : 10.1007/s00248-007-9325-z
Cytosolic recognition of flagellin by mouse macrophages restricts Legionella pneumophila infection, J Exp Med, vol.17, pp.1093-1104, 2006. ,
Flagellin-Deficient Legionella Mutants Evade Caspase-1- and Naip5-Mediated Macrophage Immunity, PLoS Pathogens, vol.57, issue.3, p.18, 2006. ,
DOI : 10.1371/journal.ppat.0020018.sg001
Comparative and functional genomics of Legionella identified eukaryotic like proteins as key players in host-pathogen interactions, Front Microbiol, vol.21511, p.208505, 2011. ,
URL : https://hal.archives-ouvertes.fr/pasteur-01422820
Genome dynamics in Legionella: the basis of versatility and adaptation to intracellular replication. Cold Spring Harb Perspect Med, p.9993, 2013. ,
URL : https://hal.archives-ouvertes.fr/pasteur-01333411
Regulation, Integrase-Dependent Excision, and Horizontal Transfer of Genomic Islands in Legionella pneumophila, Journal of Bacteriology, vol.195, issue.7, pp.1583-1597, 2013. ,
DOI : 10.1128/JB.01739-12
Environmental Mimics and the Lvh Type IVA Secretion System Contribute to Virulence-Related Phenotypes of Legionella pneumophila, Infection and Immunity, vol.75, issue.2, pp.723-735, 2007. ,
DOI : 10.1128/IAI.00956-06
Novel Type IV Secretion System Involved in Propagation of Genomic Islands, Journal of Bacteriology, vol.189, issue.3, pp.761-771, 2007. ,
DOI : 10.1128/JB.01327-06
A Distinct and Divergent Lineage of Genomic Island-Associated Type IV Secretion Systems in Legionella, PLoS ONE, vol.1, issue.12, p.82221, 2013. ,
DOI : 10.1371/journal.pone.0082221.s010
Pathogen effector protein screening in yeast identifies Legionella factors that interfere with membrane trafficking, Proceedings of the National Academy of Sciences, vol.102, issue.13, pp.4866-4871, 2005. ,
DOI : 10.1073/pnas.0501315102
Role for the Ankyrin eukaryotic-like genes of Legionella pneumophila in parasitism of protozoan hosts and human macrophages, Environmental Microbiology, vol.70, issue.6, pp.1460-1474, 2008. ,
DOI : 10.1111/j.1462-2920.2007.01560.x
The E Block motif is associated with Legionella pneumophila translocated substrates, Cellular Microbiology, vol.76, issue.2, pp.227-245, 2011. ,
DOI : 10.1111/j.1462-5822.2010.01531.x
Legionella pneumophila Pathogenesis in the Galleria mellonella Infection Model, Infection and Immunity, vol.80, issue.8, pp.2780-2790, 2012. ,
DOI : 10.1128/IAI.00510-12
A Legionella pneumophila-translocated substrate that is required for growth within macrophages and protection from host cell death, Proceedings of the National Academy of Sciences, vol.103, issue.49, pp.18745-18750, 2006. ,
DOI : 10.1073/pnas.0609012103
The Legionella pneumophila Effector SidJ Is Required for Efficient Recruitment of Endoplasmic Reticulum Proteins to the Bacterial Phagosome, Infection and Immunity, vol.75, issue.2, pp.592-603, 2007. ,
DOI : 10.1128/IAI.01278-06
Microtubule dysfunction by posttranslational nitrotyrosination of ??-tubulin: A nitric oxide-dependent mechanism of cellular injury, Proceedings of the National Academy of Sciences, vol.96, issue.11, pp.6365-6370, 1999. ,
DOI : 10.1073/pnas.96.11.6365
Overexpression of Camellia sinensis Thaumatin-Like Protein, CsTLP in Potato Confers Enhanced Resistance to Macrophomina phaseolina and Phytophthora infestans Infection, Molecular Biotechnology, vol.22, issue.2, pp.609-622, 2013. ,
DOI : 10.1007/s12033-012-9603-y
Osmotin and Thaumatin from Grape: A Putative General Defense Mechanism Against Pathogenic Fungi, Phytopathology, vol.93, issue.12, pp.1505-1512, 2003. ,
DOI : 10.1094/PHYTO.2003.93.12.1505
Drosophila host defense after oral infection by an entomopathogenic Pseudomonas species, Proceedings of the National Academy of Sciences, vol.102, issue.32, pp.11414-11419, 2005. ,
DOI : 10.1073/pnas.0502240102
A synaptic vesicle membrane protein is conserved from mammals to Drosophila, Neuron, vol.2, issue.5, pp.1475-1481, 1989. ,
DOI : 10.1016/0896-6273(89)90193-1
COP and clathrin-coated vesicle budding: different pathways, common approaches, Current Opinion in Cell Biology, vol.16, issue.4, pp.379-391, 2004. ,
DOI : 10.1016/j.ceb.2004.06.009
effector acquired from protozoa is involved in sphingolipids metabolism and is targeted to the host cell mitochondria, Cellular Microbiology, vol.76, issue.8, pp.1219-1235, 2009. ,
DOI : 10.1111/j.1462-5822.2009.01328.x
The origins of eukaryotic-like proteins in Legionella pneumophila, International Journal of Medical Microbiology, vol.300, issue.7, pp.470-481, 2010. ,
DOI : 10.1016/j.ijmm.2010.04.016
GamA is a eukaryotic-like glucoamylase responsible for glycogen- and starch-degrading activity of Legionella pneumophila, International Journal of Medical Microbiology, vol.301, issue.2, pp.133-139, 2011. ,
DOI : 10.1016/j.ijmm.2010.08.016
Tubulin Tyrosine Ligase and Stathmin Compete for Tubulin Binding In Vitro, Journal of Molecular Biology, vol.425, issue.14, pp.2412-2414, 2013. ,
DOI : 10.1016/j.jmb.2013.04.017
Cross genome comparisons of serine proteases in Arabidopsis and rice, BMC Genomics, 0200. ,
The hyp operon gene products are required for the maturation of catalytically active hydrogenase isoenzymes in Escherichia coli, Archives of Microbiology, vol.158, issue.6, pp.444-451, 1992. ,
DOI : 10.1007/BF00276307
Truncated Hemoglobins: A New Family of Hemoglobins Widely Distributed in Bacteria, Unicellular Eukaryotes, and Plants, Journal of Biological Chemistry, vol.277, issue.2, pp.871-874, 2002. ,
DOI : 10.1074/jbc.R100058200
Truncated hemoglobin HbN protects Mycobacterium bovis from nitric oxide, Proceedings of the National Academy of Sciences, vol.99, issue.9, pp.5902-5907, 2002. ,
DOI : 10.1073/pnas.092017799
Responses of Mycobacterium tuberculosis Hemoglobin Promoters to In Vitro and In Vivo Growth Conditions, Applied and Environmental Microbiology, vol.74, issue.11, pp.3512-3522, 2008. ,
DOI : 10.1128/AEM.02663-07
A Phylogenetic and Structural Analysis of Truncated Hemoglobins, Journal of Molecular Evolution, vol.275, issue.2, pp.196-210, 2006. ,
DOI : 10.1007/s00239-005-0077-4
Iron-Regulated Expression of Alginate Production, Mucoid Phenotype, and Biofilm Formation by Pseudomonas aeruginosa, mBio, vol.5, issue.1, pp.1010-01013, 2014. ,
DOI : 10.1128/mBio.01010-13
Transcriptional profiling of Legionella pneumophila biofilm cells and the influence of iron on biofilm formation, Microbiology, vol.154, issue.1, pp.30-41, 2008. ,
DOI : 10.1099/mic.0.2007/008698-0
URL : https://hal.archives-ouvertes.fr/hal-00801241
Iron Detoxification Properties of Escherichia coli Bacterioferritin. ATTENUATION OF OXYRADICAL CHEMISTRY, Journal of Biological Chemistry, vol.277, issue.40, pp.37064-37069, 2002. ,
DOI : 10.1074/jbc.M205712200
NEW EMBO MEMBER'S REVIEW: Ferritins, iron uptake and storage from the bacterioferritin viewpoint, The EMBO Journal, vol.22, issue.9, pp.1959-1968, 2003. ,
DOI : 10.1093/emboj/cdg215
despite mutations of active site residues, Molecular Microbiology, vol.62, issue.3, pp.507-517, 2013. ,
DOI : 10.1111/mmi.12293
URL : https://hal.archives-ouvertes.fr/pasteur-01336155
The Legionella pneumophila Dot/Icm-secreted Effector PlcC/CegC1 Together with PlcA and PlcB Promotes Virulence and Belongs to a Novel Zinc Metallophospholipase C Family Present in Bacteria and Fungi, Journal of Biological Chemistry, vol.288, issue.16, pp.11080-11092, 2013. ,
DOI : 10.1074/jbc.M112.426049
Iterative Correction of Reference Nucleotides (iCORN) using second generation sequencing technology, Bioinformatics, vol.26, issue.14, pp.1704-1707, 2010. ,
DOI : 10.1093/bioinformatics/btq269
MicroScope--an integrated microbial resource for the curation and comparative analysis of genomic and metabolic data, Nucleic Acids Research, vol.41, issue.D1, pp.636-647, 2013. ,
DOI : 10.1093/nar/gks1194
PanOCT: automated clustering of orthologs using conserved gene neighborhood for pan-genomic analysis of bacterial strains and closely related species, Nucleic Acids Research, vol.40, issue.22, p.172, 2012. ,
DOI : 10.1093/nar/gks757
BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons, BMC Genomics, vol.192, issue.1, p.402, 2011. ,
DOI : 10.1128/JB.01144-09
Easyfig: a genome comparison visualizer, Bioinformatics, vol.27, issue.7, pp.1009-1010, 2011. ,
DOI : 10.1093/bioinformatics/btr039
Mauve: Multiple Alignment of Conserved Genomic Sequence With Rearrangements, Genome Research, vol.14, issue.7, pp.1394-1403, 2004. ,
DOI : 10.1101/gr.2289704
Sel1 Repeat Protein LpnE Is a Legionella pneumophila Virulence Determinant That Influences Vacuolar Trafficking, Infection and Immunity, vol.75, issue.12, pp.5575-5585, 2007. ,
DOI : 10.1128/IAI.00443-07
MUSCLE: a multiple sequence alignment method with reduced time and space complexity, BMC Bioinformatics, vol.5, issue.1, p.113, 2004. ,
DOI : 10.1186/1471-2105-5-113
BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments, BMC Evolutionary Biology, vol.10, issue.1, p.210, 2010. ,
DOI : 10.1186/1471-2148-10-210
FastTree 2 ??? Approximately Maximum-Likelihood Trees for Large Alignments, PLoS ONE, vol.5, issue.3, p.9490, 2010. ,
DOI : 10.1371/journal.pone.0009490.s003
Selection of Conserved Blocks from Multiple Alignments for Their Use in Phylogenetic Analysis, Molecular Biology and Evolution, vol.17, issue.4, pp.540-552, 2000. ,
DOI : 10.1093/oxfordjournals.molbev.a026334