P. Bady and J. F. Fruget, Étude thermique globale du Rhône. Phase 3. Influence de la variabilité hydroclimatique 1985?2004 sur les peuplements de macroinvertébrés, 2006.

A. Bij-de-vaate, K. Jazdzewski, H. A. Ketelaars, S. Gollasch, and G. Van-der-velde, Geographical patterns in range extension of Ponto-Caspian macroinvertebrate species in Europe, Canadian Journal of Fisheries and Aquatic Sciences, vol.59, issue.7, pp.1159-1174, 2002.
DOI : 10.1139/f02-098

N. Bonada, S. Dolédec, and B. Statzner, Taxonomic and biological trait differences of stream macroinvertebrate communities between mediterranean and temperate regions: implications for future climatic scenarios, Global Change Biology, vol.31, issue.8, pp.1658-1671, 2007.
DOI : 10.1038/416389a

G. Carrel, Caractérisation physico-chimique des eaux du Rhône, 2005.

S. Charvet, B. Statzner, P. Usseglio-polatera, and B. Dumont, Traits of benthic macroinvertebrates in semi-natural French streams: an initial application to biomonitoring in Europe, Freshwater Biology, vol.34, issue.2, pp.277-296, 2000.
DOI : 10.1002/(SICI)1099-0755(199609)6:3<141::AID-AQC189>3.0.CO;2-Z

A. Dai, T. Qian, K. E. Trenberth, and J. D. Milliman, Changes in Continental Freshwater Discharge from 1948 to 2004, Journal of Climate, vol.22, issue.10, pp.2773-2791, 1948.
DOI : 10.1175/2008JCLI2592.1

M. Daufresne, Impacts des pressions climatiques et non climatiques sur les communaut??s piscicoles de grands fleuves fran??ais, Hydro??cologie Appliqu??e, vol.16, pp.109-134, 2008.
DOI : 10.1051/hydro/2009006

M. Daufresne and P. Boët, Climate change impacts on structure and diversity of fish communities in rivers, Global Change Biology, vol.13, issue.12, pp.2467-2478, 2007.
DOI : 10.1002/(SICI)1099-1085(199602)10:2<205::AID-HYP358>3.0.CO;2-1

M. Daufresne, M. C. Roger, H. Capra, and N. Lamouroux, Long-term changes within the invertebrate and fish communities of the Upper Rhone River: effects of climatic factors, Global Change Biology, vol.46, issue.76, pp.124-140, 2003.
DOI : 10.1002/(SICI)1099-1085(199602)10:2<205::AID-HYP358>3.0.CO;2-1

M. Daufresne, P. Bady, and J. F. Fruget, Impacts of global changes and extreme hydroclimatic events on macroinvertebrate community structures in the French Rh??ne River, Oecologia, vol.61, issue.3, pp.544-559, 2007.
DOI : 10.1007/s00442-006-0655-1

J. Dessaix, J. F. Fruget, J. M. Olivier, and J. L. Beffy, Changes of the macroinvertebrate communities in the dammed and by-passed sections of the French Upper Rhône after its regulation, pp.265-279, 1995.

S. Devin, L. Bollache, P. Y. Noël, and J. N. Beisel, Patterns of Biological Invasions in French Freshwater Systems by Non-Indigenous Macroinvertebrates, Hydrobiologia, vol.50, issue.345, pp.137-146, 2005.
DOI : 10.1007/s10750-005-4456-z

URL : https://hal.archives-ouvertes.fr/hal-00189940

S. Dolédec and D. Chessel, Co-inertia analysis: an alternative method for studying species-environment relationships, Freshwater Biology, vol.31, issue.3, pp.277-294, 1994.
DOI : 10.1016/0269-7491(87)90079-0

V. Ducrot, P. Usseglio-polatera, A. Péry, J. Mouthon, M. Laffont et al., USING AQUATIC MACROINVERTEBRATE SPECIES TRAITS TO BUILD TEST BATTERIES FOR SEDIMENT TOXICITY ASSESSMENT: ACCOUNTING FOR THE DIVERSITY OF POTENTIAL BIOLOGICAL RESPONSES TO TOXICANTS, Environmental Toxicology and Chemistry, vol.24, issue.9, pp.2306-2315, 2005.
DOI : 10.1897/04-559R.1

M. Dynesius and C. Nilsson, Fragmentation and Flow Regulation of River Systems in the Northern Third of the World, Science, vol.266, issue.5186, pp.753-762, 1994.
DOI : 10.1126/science.266.5186.753

M. Floury, P. Usseglio-polatera, M. Ferreol, C. Delattre, and Y. Souchon, Global climate change in large European rivers: long-term effects on macroinvertebrate communities and potential local confounding factors, Global Change Biology, vol.20, issue.66, pp.1085-1099, 2013.
DOI : 10.1111/gcb.12124

URL : https://hal.archives-ouvertes.fr/hal-01115049

J. F. Fruget, Ecology of the Lower Rhône following 200 years of human influence: a review, pp.233-246, 1992.

J. F. Fruget, Changements environnementaux, dérives écologiques et perspectives de restauration du Rhône Français: bilan de 200 ans d'influences anthropiques. VertigO, pp.1-17, 2003.

I. Giuntoli, P. Maugis, and R. B. , Évolutions observées dans les dénits des rivières en France. Sélection d'un réseau de référence et analyse de l'évolution temporelle des régimes des 40 dernières années. Collection « Comprendre pour agir, 2012.

F. Hendricks, Impact hydrologique d'un changement climatique sur le bassin du Rh??ne, Hydro??cologie Appliqu??e, vol.13, pp.77-100, 2001.
DOI : 10.1051/hydro:2001007

G. Khalaf and H. Tachet, Colonization of artificial substrata by macro-invertebrates in a stream and variations according to stone size, Freshwater Biology, vol.72, issue.5, pp.475-482, 1980.
DOI : 10.1007/BF00017555

A. Lecerf, P. Usseglio-polatera, J. Charcosset, D. Lambrigot, B. Bracht et al., Assessment of functional integrity of eutrophic streams using litter breakdown and benthic macroinvertebrates, Archiv f??r Hydrobiologie, vol.165, issue.1, pp.105-126, 2006.
DOI : 10.1127/0003-9136/2006/0165-0105

URL : https://hal.archives-ouvertes.fr/hal-00023384

J. Mouthon, Découverte de Sinanodonta woodiana (Lea, 1834) (Bivalvia: Unionacea) dans un réservoir eutrophe, pp.241-243, 2008.

G. E. Petts, H. Moller, and A. L. Roux, Historical change of large alluvial rivers: Western Europe, J. Wiley and Sons, vol.355, 1989.

C. Piscart, A. Lecerf, P. Usseglio-polatera, J. C. Moreteau, and J. N. Beisel, Biodiversity patterns along a salinity gradient: the case of net-spinning caddisflies, Biodiversity and Conservation, vol.152, issue.Suppl., pp.2235-2249, 2005.
DOI : 10.1007/s10531-004-4783-9

C. Piscart, P. Usseglio-polatera, J. C. Moreteau, and J. N. Beisel, The role of salinity in the selection of biological traits of freshwater invertebrates, Archiv f??r Hydrobiologie, vol.166, issue.2, pp.185-198, 2006.
DOI : 10.1127/0003-9136/2006/0166-0185

URL : https://hal.archives-ouvertes.fr/hal-00022914

Y. Souchon, M. C. Roger, B. Villeneuve, and J. Piffady, Rhône amont. CNPE Bugey. Tendances temporelles de l'hydrologie, de la température et des communautés biologiques de macroinvertébrés et de poisons au cours des trente dernières années, 2011.

T. R. Southwood, Habitat, the Templet for Ecological Strategies?, The Journal of Animal Ecology, vol.46, issue.2, pp.337-365, 1977.
DOI : 10.2307/3817

K. Stahl, H. Hisdal, J. Hannaford, L. M. Tallaksen, H. J. Van-lanen et al., Streamflow trends in Europe: evidence from a dataset of near-natural catchments, Hydrology and Earth System Sciences, vol.14, issue.12, pp.2367-2382, 2010.
DOI : 10.5194/hess-14-2367-2010

URL : https://hal.archives-ouvertes.fr/hal-00550096

B. Statzner and L. Bêche, Can biological invertebrate traits resolve effects of multiple stressors on running water ecosystems? Freshwater Biol, pp.80-119, 2010.

B. Statzner, K. Hoppenhaus, M. Arens, and P. Richoux, Reproductive traits, habitat use and templet theory: a synthesis of world-wide data on aquatic insects, Freshwater Biology, vol.38, issue.1, pp.109-135, 1997.
DOI : 10.1046/j.1365-2427.1997.00195.x

B. Statzner, S. Dolédec, and B. Hugueny, Biological trait composition of European stream invertebrate communities: assessing the effects of various trait filter types, Ecography, vol.65, issue.Suppl. 1, pp.470-488, 2004.
DOI : 10.1111/j.0906-7590.2004.03836.x

B. Statzner, P. Bady, S. Dolédec, and F. Schöll, Invertebrate traits for the biomonitoring of large European rivers: an initial assessment of trait patterns in least impacted river reaches, Freshwater Biology, vol.37, issue.423, pp.2136-2161, 2005.
DOI : 10.1111/j.1365-2427.2005.01447.x

URL : https://hal.archives-ouvertes.fr/halsde-00340340

B. Statzner, N. Bonada, and S. Doledec, Biological attributes discriminating invasive from native European stream macroinvertebrates, Biological Invasions, vol.537, issue.4, pp.517-530, 2008.
DOI : 10.1007/s10530-007-9148-3

URL : https://hal.archives-ouvertes.fr/halsde-00267474

N. C. Stenseth, A. Mysterud, G. Ottersen, J. W. Hurrell, K. S. Chan et al., Ecological Effects of Climate Fluctuations, Science, vol.297, issue.5585, pp.1292-1296, 2002.
DOI : 10.1126/science.1071281

K. Tockner, M. Pusch, D. Borchardt, and M. S. Lorang, Multiple stressors in coupled river-floodplain ecosystems, Freshwater Biology, vol.88, pp.135-151, 2010.
DOI : 10.1111/j.1365-2427.2009.02371.x

C. R. Townsend and A. G. Hildrew, Species traits in relation to a habitat templet for river systems, Freshwater Biology, vol.8, issue.3, pp.265-275, 1994.
DOI : 10.1007/BF00008618

C. R. Townsend, S. Dolédec, and M. Scarsbrook, Species traits in relation to temporal and spatial heterogeneity in streams: a test of habitat templet theory, Freshwater Biology, vol.37, issue.2, pp.367-387, 1997.
DOI : 10.1046/j.1365-2427.1997.00166.x

P. Usseglio-polatera, M. Bournaud, P. Richoux, and H. Tachet, Biological and ecological traits of benthic freshwater macroinvertebrates: relationships and definition of groups with similar traits, Freshwater Biology, vol.58, issue.2, pp.175-205, 2000.
DOI : 10.1046/j.1365-2427.1997.00166.x

J. Fruget, C. Jézéquel, G. Archambaud, J. Dessaix, and M. Roger, Long-term effects of global and local changes on benthic macroinvertebrate communities in multistressed large rivers: the example of the Rhône River during the last 30 years, Knowl. Manag. Aquat. Ecosyst, vol.416, p.29, 2015.