Guidelines: From artificial evolution to computational evolution: a research agenda, Nature Reviews Genetics, vol.69, issue.9, pp.729-735, 2006. ,
DOI : 10.1017/S0094837300004310
URL : https://hal.archives-ouvertes.fr/hal-00793902
The human gene for vascular endothelial growth factor. Multiple protein forms are encoded through alternative exon splicing, Journal of Biological Chemistry, vol.266, issue.18, pp.11947-11954, 1991. ,
A genomic view of alternative splicing, Nature Genetics, vol.30, issue.1, pp.13-19, 2002. ,
DOI : 10.1038/ng0102-13
Transcriptional Regulatory Networks in Saccharomyces cerevisiae, Transcriptional regulatory networks in Saccharomyces cerevisiae, pp.799-804, 2002. ,
DOI : 10.1126/science.1075090
Transcription regulation and animal diversity, Nature, vol.424, issue.6945, pp.147-151, 2003. ,
DOI : 10.1038/nature01763
Robustness and evolvability in living systems, NJ, 2005. ,
DOI : 10.1515/9781400849383
Evolution of cis-regulatory sequence and function in Diptera, Heredity, vol.92, issue.Pt 2, pp.139-147, 2006. ,
DOI : 10.1073/pnas.92.20.9313
Evolutionary Forces Act on Promoter Length: Identification of Enriched Cis-Regulatory Elements, Molecular Biology and Evolution, vol.26, issue.6, 2009. ,
DOI : 10.1093/molbev/msp040
An introduction to systems biology: design principles of biological circuits, CRC, 2007. ,
Gene regulatory network growth by duplication, Nature Genetics, vol.36, issue.5, pp.492-496, 2004. ,
DOI : 10.1038/ng1340
URL : http://www.nature.com/ng/journal/v36/n5/pdf/ng1340.pdf
The Evolution of Evolvability in Gene Transcription Networks, Artificial Life, vol.11, p.265, 2008. ,
Conservation and evolvability in regulatory networks: The evolution of ribosomal regulation in yeast, Proceedings of the National Academy of Sciences, vol.99, issue.2, pp.7203-7208, 2005. ,
DOI : 10.1073/pnas.012591199
The evolution of gene regulation by transcription factors and microRNAs, Nature Reviews Genetics, vol.433, issue.2, pp.93-103, 2007. ,
DOI : 10.1093/oxfordjournals.molbev.a003964
Evolving modular genetic regulatory networks, Proceedings of the 2002 Congress on Evolutionary Computation. CEC'02 (Cat. No.02TH8600), pp.1872-1877, 2002. ,
DOI : 10.1109/CEC.2002.1004528
Using promoters and functional introns in genetic algorithms for neuroevolutionary learning in non-stationary problems, Neurocomputing, vol.72, issue.10-12, 2008. ,
DOI : 10.1016/j.neucom.2008.10.022
A Computational Model of Gene Regulatory Networks and its Topological Properties, Artificial Life, vol.11, p.204, 2008. ,
Evolutionary synthesis of analog networks, 2005. ,
Replaying the Evolutionary Tape: Biomimetic Reverse Engineering of Gene Networks, Annals of the New York Academy of Sciences, vol.4, issue.1, 2008. ,
DOI : 10.1201/9781420034349
MOLECULAR BIOLOGY: Glimpses of a Tiny RNA World, Science, vol.294, issue.5543, p.797, 2001. ,
DOI : 10.1126/science.1066315
Identification of common molecular subsequences, Journal of Molecular Biology, vol.147, issue.1, pp.195-197, 1981. ,
DOI : 10.1016/0022-2836(81)90087-5
URL : http://www.cmb.usc.edu/papers/msw_papers/msw-042.pdf
A fast and elitist multiobjective genetic algorithm: NSGA-II, IEEE Transactions on Evolutionary Computation, vol.6, issue.2, pp.182-197, 2002. ,
DOI : 10.1109/4235.996017
URL : http://work.caltech.edu/amrit/papers/nsga2.ps.gz