A. Mitchell, H. Chang, L. Daugherty, M. Fraser, S. Hunter et al., The InterPro protein families database: the classification resource after 15 years, Nucleic Acids Research, vol.43, issue.D1, pp.213-221, 2015.
DOI : 10.1093/nar/gku1243
URL : https://hal.archives-ouvertes.fr/hal-01222896

M. Punta, P. C. Coggill, R. Y. Eberhardt, J. Mistry, J. Tate et al., The Pfam protein families database, Nucleic Acids Research, vol.40, issue.D1, pp.290-301, 2012.
DOI : 10.1093/nar/gkr1065
URL : https://hal.archives-ouvertes.fr/hal-01294685

R. Y. Eberhardt, D. H. Haft, M. Punta, M. Martin, C. O-'donovan et al., AntiFam: a tool to help identify spurious ORFs in protein annotation, Database, vol.2012, issue.0, 2012.
DOI : 10.1093/database/bas003

A. Bateman and R. D. Finn, SCOOP: a simple method for identification of novel protein superfamily relationships, Bioinformatics, vol.23, issue.7, pp.809-814, 2007.
DOI : 10.1093/bioinformatics/btm034

S. ¨-oding and J. , Protein homology detection by HMM-HMM comparison, Bioinformatics, vol.21, issue.7, pp.951-960, 2005.
DOI : 10.1093/bioinformatics/bti125

R. D. Finn, A. Bateman, J. Clements, P. Coggill, R. Y. Eberhardt et al., Pfam: the protein families database, Nucleic Acids Research, vol.42, issue.D1, pp.222-230, 2014.
DOI : 10.1093/nar/gkt1223
URL : https://hal.archives-ouvertes.fr/hal-01294685

C. Chen, D. A. Natale, R. D. Finn, H. Huang, J. Zhang et al., Representative Proteomes: A Stable, Scalable and Unbiased Proteome Set for Sequence Analysis and Functional Annotation, PLoS ONE, vol.55, issue.4, 2011.
DOI : 10.1371/journal.pone.0018910.s002

S. Velankar, J. M. Dana, J. Jacobsen, G. Van-ginkel, P. J. Gane et al., SIFTS: Structure Integration with Function, Taxonomy and Sequences resource, Nucleic Acids Research, vol.41, issue.D1, pp.483-489, 2013.
DOI : 10.1093/nar/gks1258

A. Heger, C. A. Wilton, A. Sivakumar, and L. Holm, ADDA: a domain database with global coverage of the protein universe, Nucleic Acids Research, vol.33, issue.Database issue, pp.188-191, 2005.
DOI : 10.1093/nar/gki096

S. F. Altschul, T. L. Madden, A. A. Schäffer, J. Zhang, Z. Zhang et al., Gapped BLAST and PSI-BLAST: a new generation of protein database search programs, Nucleic Acids Research, vol.25, issue.17, pp.3389-3402, 1997.
DOI : 10.1093/nar/25.17.3389

R. D. Finn, J. Mistry, J. Tate, P. Coggill, A. Heger et al., The Pfam protein families database, Nucleic Acids Research, vol.38, issue.Database, pp.211-222, 2010.
DOI : 10.1093/nar/gkp985
URL : https://hal.archives-ouvertes.fr/hal-01294685

R. D. Finn, J. Clements, W. Arndt, B. L. Miller, T. J. Wheeler et al., HMMER web server: 2015 update, Nucleic Acids Research, vol.43, issue.W1, pp.30-38, 2015.
DOI : 10.1093/nar/gkv397

R. D. Finn, J. Mistry, B. Schuster-b-¨-ockler, S. Griffiths-jones, V. Hollich et al., Pfam: clans, web tools and services, Nucleic Acids Research, vol.34, issue.90001, pp.247-251, 2006.
DOI : 10.1093/nar/gkj149
URL : http://doi.org/10.1093/nar/gkj149

E. Potenza, D. Domenico, T. Walsh, I. Tosatto, and S. C. , MobiDB 2.0: an improved database of intrinsically disordered and mobile proteins, Nucleic Acids Research, vol.43, issue.D1, pp.315-320, 2015.
DOI : 10.1093/nar/gku982

T. L. Vincent, D. N. Woolfson, and J. C. Adams, Prediction and analysis of higher-order coiled-coils: Insights from proteins of the extracellular matrix, tenascins and thrombospondins, The International Journal of Biochemistry & Cell Biology, vol.45, issue.11, pp.2392-2401, 2013.
DOI : 10.1016/j.biocel.2013.07.011

J. Surkont and J. B. Pereira-leal, Evolutionary Patterns in Coiled-Coils, Genome Biology and Evolution, vol.7, issue.2, pp.545-556, 2015.
DOI : 10.1093/gbe/evv007

J. Mistry, R. D. Finn, S. R. Eddy, A. Bateman, and M. Punta, Challenges in homology search: HMMER3 and convergent evolution of coiled-coil regions, Nucleic Acids Research, vol.41, issue.12, p.121, 2013.
DOI : 10.1093/nar/gkt263

O. J. Rackham, M. Madera, C. T. Armstrong, T. L. Vincent, D. N. Woolfson et al., The Evolution and Structure Prediction of Coiled Coils across All Genomes, Journal of Molecular Biology, vol.403, issue.3, pp.480-493, 2010.
DOI : 10.1016/j.jmb.2010.08.032