S. Goodman, Les chauves-souris de Madagascar. Antananarivo: Association Vahatra, 2011.

S. Goodman, B. Ramasindrazana, C. Maminirina, M. Schoeman, and B. Appleton, Morphological, bioacoustical , and genetic variation in Miniopterus bats from eastern Madagascar, with the description of a new species, Zootaxa, vol.2880, pp.1-19, 2011.

S. Goodman, P. Taylor, F. Ratrimomanarivo, and S. Hoofer, The genus Neoromicia (Family Vespertilionidae ) in Madagascar, with the description of a new species, Zootaxa, vol.3250, pp.1-25, 2012.

A. Rakotoarivelo, M. Ralisata, O. Ramilijaona, M. Rakotomalala, P. Racey et al., The food habits of a Malagasy giant: Hipposideros commersoni (E. Geoffroy, 1813) Afr, J Ecol, vol.47, pp.283-291, 2009.

A. Russell, S. Goodman, and M. Cox, ORIGINAL ARTICLE: Coalescent analyses support multiple mainland-to-island dispersals in the evolution of Malagasy Triaenops bats (Chiroptera: Hipposideridae), Journal of Biogeography, vol.102, issue.6, pp.995-1003, 2008.
DOI : 10.1111/j.1365-2699.2008.01891.x

N. Weyeneth, S. Goodman, and M. Ruedi, Do diversification models of Madagascar???s biota explain the population structure of the endemic bat Myotis goudoti (Chiroptera: Vespertilionidae)?, Journal of Biogeography, vol.62, issue.1, pp.44-54, 2011.
DOI : 10.1111/j.1365-2699.2010.02393.x

A. Russell, J. Ranivo, E. Palkovacs, S. Goodman, and A. Yoder, Working at the interface of phylogenetics and population genetics: a biogeographical analysis of Triaenops spp. (Chiroptera: Hipposideridae), Molecular Ecology, vol.13, issue.4, pp.839-51, 2007.
DOI : 10.1111/j.1365-294X.2007.03192.x

S. Goodman, D. Andriafidison, R. Andrianaivoarivelo, S. Cardiff, E. Ifticene et al., The distribution and conservation of bats in the dry regions of Madagascar, Animal Conservation, vol.21, issue.2, pp.153-65, 2005.
DOI : 10.1046/j.1472-4642.1998.00012.x

F. Randrianandrianina, D. Andriafidison, A. Kofoky, O. Ramilijaona, F. Ratrimomanarivo et al., Habitat use and conservation of bats in rainforest and adjacent human-modified habitats in eastern Madagascar, Acta Chiropterologica, vol.8, issue.2, pp.429-466, 2006.
DOI : 10.3161/1733-5329(2006)8[429:HUACOB]2.0.CO;2

A. Kofoky, D. Andriafidison, F. Ratrimomanarivo, H. Razafimanahaka, D. Rakotondravony et al., Habitat Use, Roost Selection and Conservation of Bats in Tsingy De Bemaraha National Park, Madagascar, Biodiversity and Conservation, vol.77, issue.4, pp.1039-53, 2007.
DOI : 10.1007/s10531-006-9059-0

C. Calisher, J. Childs, H. Field, K. Holmes, and T. Schountz, Bats: Important Reservoir Hosts of Emerging Viruses, Clinical Microbiology Reviews, vol.19, issue.3, pp.531-576, 2006.
DOI : 10.1128/CMR.00017-06

E. Lagadec, Y. Gomard, V. Guernier, M. Dietrich, H. Pascalis et al., spp. in Bats, Madagascar and Union of the Comoros, Emerging Infectious Diseases, vol.18, issue.10, pp.1696-1704, 2012.
DOI : 10.3201/eid1810.111898

URL : https://hal.archives-ouvertes.fr/hal-01285429

D. Wilkinson, S. Temmam, C. Lebarbenchon, E. Lagadec, J. Chotte et al., Identification of novel paramyxoviruses in insectivorous bats of the Southwest Indian Ocean, Virus Research, vol.170, issue.1-2, pp.159-63, 2012.
DOI : 10.1016/j.virusres.2012.08.022

URL : https://hal.archives-ouvertes.fr/pasteur-00836609

M. Dietrich, D. Wilkinson, V. Soarimalala, S. Goodman, K. Dellagi et al., Diversification of an emerging pathogen in a biodiversity hotspot: Leptospira in endemic small mammals of Madagascar
URL : https://hal.archives-ouvertes.fr/hal-01274556

D. Wilkinson, J. Mélade, M. Dietrich, B. Ramasindrazana, V. Soarimalala et al., Highly Diverse Morbillivirus-Related Paramyxoviruses in Wild Fauna of the Southwestern Indian Ocean Islands: Evidence of Exchange between Introduced and Endemic Small Mammals, Journal of Virology, vol.88, issue.15, pp.8268-77, 2014.
DOI : 10.1128/JVI.01211-14

URL : https://hal.archives-ouvertes.fr/hal-01274563

K. Junker, O. Bain, and J. Boomker, Helminth parasites of Natal long-fingered bats, Miniopterus natalensis (Chiroptera: Miniopteridae), South Africa, Onderstepoort J Vet Res. Epub, vol.7512, issue.3, pp.261-266, 2008.

I. Sawada, *ON A NEW TAPEWORM, VAMPIROLEPIS ISENSIS, FOUND IN BATS WITH THE TABLE OF THE MORPHOLOGICAL FEATURES OF TAPEWORMS IN VAMPIROLEPIS, Japanese Journal of Medical Science and Biology, vol.19, issue.1, pp.51-58, 1966.
DOI : 10.7883/yoken1952.19.51

R. Guerrero and O. Bain, ??? (Nematoda) parasites of small mammals described by von Linstow and Molin, Parasite, vol.18, issue.2, pp.151-61, 2011.
DOI : 10.1051/parasite/2011182151

E. Ferri, O. Bain, M. Barbuto, C. Martin, N. Lo et al., New Insights into the Evolution of Wolbachia Infections in Filarial Nematodes Inferred from a Large Range of Screened Species, PLoS ONE, vol.16, issue.6, p.21731626, 2011.
DOI : 10.1371/journal.pone.0020843.s004

S. Morand, S. Bouamer, J. Hugot, S. Morand, B. Krasnov et al., Micromammals macroparasites: From evolutionary to ecology managment, pp.63-79, 2006.
DOI : 10.1007/978-4-431-36025-4

J. Hugot, P. Baujard, and S. Morand, Biodiversity in helminths and nematodes as a field of study: an overview, Nematology, vol.3, issue.3, pp.1-10, 2001.
DOI : 10.1163/156854101750413270

M. Casiraghi, O. Bain, R. Guerrero, C. Martin, V. Pocacqua et al., Mapping the presence of Wolbachia pipientis on the phylogeny of filarial nematodes: evidence for symbiont loss during evolution, International Journal for Parasitology, vol.34, issue.2, pp.191-203, 2004.
DOI : 10.1016/j.ijpara.2003.10.004

R. Poulin and S. Morand, The Diversity of Parasites, The Quarterly Review of Biology, vol.75, issue.3, pp.277-93, 2000.
DOI : 10.1086/393500

K. Junker, M. Barbuto, M. Casiraghi, C. Martin, S. Uni et al., Nematoda: Filarioidea) from a South African miniopterid: Redescription, Wolbachia screening and phylogenetic relationships with Litomosoides, Litomosa chiropterorum Ortlepp, pp.43-50, 1932.

R. Guerrero, O. Bain, T. Attout, C. Martin, and . Guerrero, -free filaria from bat, Parasite, vol.13, issue.2, pp.127-157, 2003.
DOI : 10.1051/parasite/2006132127

URL : https://hal.archives-ouvertes.fr/in2p3-00656167

C. O. Martin and . Bain, ): A life dedicated to systematics and biology of Filariae, Plos Neglected Tropical Diseases, vol.8, issue.2, p.24551249, 1939.

R. Guerrero, C. Martin, S. Gardner, and O. Bain, New and Known Species of Litomosoides (Nematoda: Filarioidea): Important Adult and Larval Characters and Taxonomic Changes, Comparative Parasitology, vol.69, issue.2, pp.177-95, 2002.
DOI : 10.1654/1525-2647(2002)069[0177:NAKSOL]2.0.CO;2

O. Bain, Diversité et étroite spécificité parasitaire des filaires de chauves-souris, confondues sous le nom de Litomosa filaria (van Beneden, 1872) Bulletin du Muséum d'Histoire Naturelle, Paris, vol.38, issue.6, pp.928-967, 1967.

M. Tibayrenc, O. Bain, and C. Ramachandran, Deux nouvelles Litomosa (Filaroidea) de chauves-souris, Bulletin du MuséumHistoire Naturelle, Paris, vol.4, issue.1, pp.183-192, 1979.

C. Martin, O. Bain, N. Jouvenet, V. Raharimanga, V. Robert et al., First report of Litomosa spp. (Nematoda: Filarioidea) from Malagasy bats; review of the genus and relationships between species, Parasite, vol.1312, issue.1, pp.3-10, 2006.

F. Mészaros and S. Mas-coma, On some parasitic helminths from Spanish bats, Parasitol Hung, vol.13, pp.56-64, 1980.

V. Raharimanga, F. Ariey, S. Cardiff, S. Goodman, A. Tall et al., Hémoparasites des chauves-souris à Madagascar, Arch Inst Pasteur Madag, vol.69, issue.1&2, pp.70-76, 2003.

S. Goodman, C. Maminirina, N. Weyeneth, H. Bradman, L. Christidis et al., (Chiroptera, Miniopteridae), Zoologica Scripta, vol.102, issue.Supplement, pp.339-63, 2009.
DOI : 10.1111/j.1463-6409.2008.00377.x

URL : http://dro.deakin.edu.au/eserv/DU:30047860/appleton-newspecies-2008.pdf

S. Goodman and B. Ramasindrazana, Bats or the order Chiroptera Atlas of selected land vertebrates of Madagascar. Antananarivo: Association Vahatra, pp.169-209, 2013.

R. Sikes and W. Gannon, Guidelines of the American Society of Mammalogists for the use of wild mammals in research, Journal of Mammalogy, vol.92, issue.1, pp.235-53, 2011.
DOI : 10.1644/10-MAMM-F-355.1

P. Tortosa, N. Dsouli, Y. Gomard, B. Ramasindrazana, C. Dick et al., Evolutionary History of Indian Ocean Nycteribiid Bat Flies Mirroring the Ecology of Their Hosts, PLoS ONE, vol.5, issue.9, p.75215, 2013.
DOI : 10.1371/journal.pone.0075215.s004

URL : https://hal.archives-ouvertes.fr/hal-01274578

M. Casiraghi, T. Anderson, C. Bandi, C. Bazzocchi, and C. Genchi, A phylogenetic analysis of filarial nematodes: comparison with the phylogeny of Wolbachia endosymbionts, Parasitology, vol.122, issue.1, pp.93-103, 2001.
DOI : 10.1017/S0031182000007149

E. Ferri, M. Barbuto, O. Bain, A. Galimberti, S. Uni et al., Integrated taxonomy: traditional approach and DNA barcoding for the identification of filarioid worms and related parasites (Nematoda), Frontiers in Zoology, vol.6, issue.1
DOI : 10.1186/1742-9994-6-1

D. Posada and . Jmodeltest, jModelTest: Phylogenetic Model Averaging, Molecular Biology and Evolution, vol.25, issue.7, pp.1253-1259, 2008.
DOI : 10.1093/molbev/msn083

URL : http://mbe.oxfordjournals.org/cgi/content/short/25/7/1253

D. Darriba, G. Taboada, R. Doallo, and D. Posada, jModelTest 2: more models, new heuristics and parallel computing, Nature Methods, vol.9, issue.8, p.772, 2012.
DOI : 10.1109/TAC.1974.1100705

F. Ronquist, M. Teslenko, P. Van-der-mark, D. Ayres, A. Darling et al., MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space, Systematic Biology, vol.61, issue.3, pp.539-581, 2012.
DOI : 10.1093/sysbio/sys029

J. Huelsenbeck and R. F. Mrbayes, Bayesian inference of phylogenetic trees, Bioinformatics, vol.17, issue.8, pp.744-55, 2001.

E. Paradis, C. J. Strimmer, and E. , APE: Analyses of Phylogenetics and Evolution in R language, Bioinformatics, vol.20, issue.2, pp.289-90, 2004.
DOI : 10.1093/bioinformatics/btg412

R. Team, R: A language and environment for statistical computing. R Foundation for Statistical Computing

M. Gouy, S. Guindon, and O. Gascuel, SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building, Molecular Biology and Evolution, vol.27, issue.2, pp.221-225, 2010.
DOI : 10.1093/molbev/msp259

URL : https://hal.archives-ouvertes.fr/lirmm-00705187

M. Charleston and D. Robertson, Preferential Host Switching by Primate Lentiviruses Can Account for Phylogenetic Similarity with the Primate Phylogeny, Systematic Biology, vol.51, issue.3, pp.528-563, 2002.
DOI : 10.1080/10635150290069940

S. Dray and A. Dufour, The ade4 package: Implementing the duality diagram for ecologist, Journal of Statistical Software, vol.22, issue.4, pp.1-20, 2007.

D. Traversa, F. Costanzo, R. Iorio, I. Aroch, and E. Lavy, Mitochondrial cytochrome c oxidase subunit 1 (cox1) gene sequence of Spirocerca lupi (Nematoda, Spirurida): Avenues for potential implications, Veterinary Parasitology, vol.146, issue.3-4, pp.3-4263, 2007.
DOI : 10.1016/j.vetpar.2007.03.015

A. Cornet, Essai de cartographie bioclimatique à Madagascar. Note explicative n° 55, Paris: ORSTOM, 1974.

L. Christidis, S. Goodman, K. Naughton, and B. Appleton, Insights into the Evolution of a Cryptic Radiation of Bats: Dispersal and Ecological Radiation of Malagasy Miniopterus (Chiroptera: Miniopteridae), PLoS ONE, vol.12, issue.4, p.24642892
DOI : 10.1371/journal.pone.0092440.s002

S. Goodman, C. Maminirina, H. Bradman, L. Christidis, and B. Appleton, The Use of Molecular Phylogenetic and Morphological Tools to Identify Cryptic and Paraphyletic Species: Examples from the Diminutive Long-fingered Bats (Chiroptera: Miniopteridae: Miniopterus) on Madagascar, American Museum Novitates, vol.3669, pp.1-33, 2009.
DOI : 10.1206/652.1

B. Ramasindrazana, S. Goodman, M. Schoeman, and B. Appleton, bats (Chiroptera: Miniopteridae) from Madagascar and the Comoros using bioacoustics overlaid on molecular genetic and morphological characters, Biological Journal of the Linnean Society, vol.104, issue.2, pp.284-302, 2011.
DOI : 10.1111/j.1095-8312.2011.01740.x

F. Gondorf, A. Berbudi, B. Buerfent, J. Ajendra, D. Bloemker et al., Chronic Filarial Infection Provides Protection against Bacterial Sepsis by Functionally Reprogramming Macrophages, PLOS Pathogens, vol.6, issue.1, 2015.
DOI : 10.1371/journal.ppat.1004616.s007

M. Zuk and K. Mckean, Sex differences in parasite infections: Patterns and processes, International Journal for Parasitology, vol.26, issue.10, pp.1009-1032, 1996.
DOI : 10.1016/S0020-7519(96)80001-4

L. Rodrigues, R. Pereira, M. Rainho, A. Palmeirim, and J. , Behavioural determinants of gene flow in the bat Miniopterus schreibersii, Behavioral Ecology and Sociobiology, vol.243, issue.5, pp.835-878, 2010.
DOI : 10.1007/s00265-009-0900-9

R. Pereira, M. Salgueiro, P. Rodrigues, L. Coelho, M. Palmeirim et al., Population Structure of a Cave-Dwelling Bat, Miniopterus schreibersii: Does It Reflect History and Social Organization?, Journal of Heredity, vol.100, issue.5, pp.533-577, 2009.
DOI : 10.1093/jhered/esp032

M. Lehane, The biology of blood-sucking in insects, 2005.

V. Robert, B. Ramasindrazana, and S. Goodman, The species composition and distribution of hematophagous insects collected by light-traps in and near cave systems of Madagascar, Malagasy Nature, vol.8, pp.54-66, 2014.

O. Bain, M. Casiraghi, C. Martin, and S. Uni, The Nematoda Filarioidea: critical analysis linking molecular and traditional approaches, Parasite, vol.15, issue.3, pp.342-350, 2008.
DOI : 10.1051/parasite/2008153342

S. Brant and S. Gardner, Two New Species of Litomosoides (Nemata: Onchocercidae) from Ctenomys opimus (Rodentia: Ctenomyidae) on the Altiplano of Bolivia, The Journal of Parasitology, vol.83, issue.4, pp.700-705, 1997.
DOI : 10.2307/3284249

S. Gardner and G. Schmidt, Two new species ofLitomosoides (Nematoda: Onchocercidae) from pocket gophers (Rodentia: Geomyidae) in Colorado, Systematic Parasitology, vol.40, issue.3, pp.235-277, 1986.
DOI : 10.1007/BF00009892

J. Notarnicola, Description of Adult and Fourth-Stage Larva of Litomosoides navonae n. sp. (Nematoda: Onchocercidae), a Parasite of Five Species of Sigmodontine Rodents from Northeastern Argentina, Systematic Parasitology, vol.28, issue.suppl. 1, pp.171-83, 2005.
DOI : 10.1007/s11230-005-5490-y

S. Goodman, K. Ryan, C. Maminirina, J. Fahr, L. Christidis et al., Specific Status of Populations on Madagascar Referred to Miniopterus fraterculus (Chiroptera: Vespertilionidae), with Description of a New Species, Journal of Mammalogy, vol.88, issue.5, pp.1216-1245, 2007.
DOI : 10.1644/06-MAMM-A-285R1.1