S. Anjilvel and B. Asgharian, A Multiple-Path Model of Particle Deposition in the Rat Lung, Fundamental and Applied Toxicology, vol.28, issue.1, pp.41-50, 1995.
DOI : 10.1006/faat.1995.1144

B. Asgharian, O. T. Price, and W. Hofmann, Prediction of particle deposition in the human lung using realistic models of lung ventilation, Journal of Aerosol Science, vol.37, issue.10, pp.1209-1221, 2006.
DOI : 10.1016/j.jaerosci.2006.01.002

J. H. Bates and B. Suki, Assessment of peripheral lung mechanics, Respiratory Physiology & Neurobiology, vol.163, issue.1-3, pp.54-63, 2008.
DOI : 10.1016/j.resp.2008.03.012

P. Brand, M. Schulte, M. Wencker, C. H. Herpich, G. Klein et al., Lung deposition of inhaled ??1-proteinase inhibitor in cystic fibrosis and ??1-antitrypsin deficiency, European Respiratory Journal, vol.34, issue.2, pp.354-60, 2009.
DOI : 10.1183/09031936.00118408

C. Darquenne and M. Paiva, One-dimensional simulation of aerosol transport and deposition in the human lung, Journal of applied physiology, vol.77, pp.2889-98, 1994.

L. De-rochefort, L. Vial, R. Fodil, X. Ma??trema??tre, B. Louis et al., In vitro validation of computational fluid dynamic simulation in human proximal airways with hyperpolarized 3He magnetic resonance phase-contrast velocimetry, Journal of Applied Physiology, vol.102, issue.5, pp.2012-2035, 2007.
DOI : 10.1152/japplphysiol.01610.2005

K. Emami, R. V. Cadman, J. M. Woodburn, M. C. Fischer, S. J. Kadlecek et al., Early changes of lung function and structure in an elastase model of emphysema--a hyperpolarized 3He MRI study, Journal of Applied Physiology, vol.104, issue.3, pp.773-786, 2008.
DOI : 10.1152/japplphysiol.00482.2007

K. Emami, E. Chia, S. Kadlecek, J. P. Macduffie-woodburn, J. Zhu et al., Regional correlation of emphysematous changes in lung function and structure: a comparison between pulmonary function testing and hyperpolarized MRI metrics, Journal of Applied Physiology, vol.110, issue.1, pp.225-260, 2011.
DOI : 10.1152/japplphysiol.00269.2010

E. Moghadam, M. Basikevs, Y. Marsden, and A. L. , A new preconditioning technique for implicitly coupled multidomain simulations with applications to hemodynamics, Computational Mechanics, vol.35, issue.1, pp.1141-1152, 2013.
DOI : 10.1007/s00466-013-0868-1

E. Moghadam, M. Bazilevs, Y. Hsia, T. Vignon-clementel, I. E. Marsden et al., A comparison of outlet boundary treatments for prevention of backflow divergence with relevance to blood flow simulations, Computational Mechanics, vol.65, issue.41???43, pp.277-291, 2011.
DOI : 10.1007/s00466-011-0599-0
URL : https://hal.archives-ouvertes.fr/hal-00650986

E. Moghadam, M. Vignon-clementel, I. E. Figliola, R. Marsden, and A. L. , A modular numerical method for implicit 0D/3D coupling in cardiovascular finite element simulations, Journal of Computational Physics, vol.244, pp.63-79, 2013.
DOI : 10.1016/j.jcp.2012.07.035
URL : https://hal.archives-ouvertes.fr/hal-00765816

R. E. Jacob, J. P. Carson, M. Thomas, and D. R. Einstein, Dynamic Multiscale Boundary Conditions for 4D CT of Healthy and Emphysematous Rats, PLoS ONE, vol.27, issue.6, p.65874, 2013.
DOI : 10.1371/journal.pone.0065874.g007

I. Katz, M. Pichelin, G. Caillibotte, S. Montesantos, C. Majoral et al., Controlled, Parametric, Individualized, 2D, and 3D Imaging Measurements of Aerosol Deposition in the Respiratory Tract of Healthy Human Subjects: Preliminary Comparisons with Simulations, Aerosol Science and Technology, vol.79, issue.7, pp.714-723, 2013.
DOI : 10.1089/jam.1989.2.285

P. W. Longest, G. Tian, R. L. Walenga, and M. Hindle, Comparing MDI and DPI Aerosol Deposition Using In Vitro Experiments and a New Stochastic Individual Path (SIP) Model of the Conducting Airways, Pharmaceutical Research, vol.99, issue.6, pp.1670-88, 2012.
DOI : 10.1007/s11095-012-0691-y

B. Ma and K. R. Lutchen, CFD Simulation of Aerosol Deposition in an Anatomically Based Human Large???Medium Airway Model, Annals of Biomedical Engineering, vol.39, issue.Suppl 1, pp.271-85, 2009.
DOI : 10.1007/s10439-008-9620-y

B. Ma, V. Ruwet, P. Corieri, R. Theunissen, M. Riethmuller et al., CFD simulation and experimental validation of fluid flow and particle transport in a model of alveolated airways, Journal of Aerosol Science, vol.40, issue.5, pp.403-141, 2009.
DOI : 10.1016/j.jaerosci.2009.01.002

K. R. Minard, A. P. Kuprat, S. Kabilan, R. E. Jacob, D. R. Einstein et al., Phase-contrast MRI and CFD modeling of apparent (3)He gas flow in rat pulmonary airways, Journal of Magnetic Resonance, vol.2012, issue.221, pp.129-138

J. Müller, O. Sahni, X. Li, K. E. Jansen, M. S. Shephard et al., Anisotropic adaptive finite element method for modelling blood flow, Computer Methods in Biomechanics and Biomedical Engineering, vol.127, issue.5, pp.295-305, 2005.
DOI : 10.1016/S0021-9290(02)00185-9

G. Mylavarapu, S. Murugappan, M. Mihaescu, M. Kalra, S. Khosla et al., Validation of computational fluid dynamics methodology used for human upper airway flow simulations, Journal of Biomechanics, vol.42, issue.10, pp.1553-1559, 2009.
DOI : 10.1016/j.jbiomech.2009.03.035

J. M. Oakes, E. Breen, M. Scadeng, G. S. Tchantchou, and C. Darquenne, MRI-based measurements of aerosol deposition in the lung of healthy and elastase-treated rats, Journal of Applied Physiology, vol.116, issue.12, pp.1561-1568, 2014.
DOI : 10.1152/japplphysiol.01165.2013
URL : https://hal.archives-ouvertes.fr/hal-01095643

J. M. Oakes, S. Day, S. J. Weinstein, R. , and R. J. , Flow Field Analysis in Expanding Healthy and Emphysematous Alveolar Models Using Particle Image Velocimetry, Journal of Biomechanical Engineering, vol.132, issue.2, pp.21008-21009, 2010.
DOI : 10.1115/1.4000870

J. M. Oakes, A. L. Marsden, C. Grandmont, S. C. Shadden, C. Darquenne et al., Airflow and Particle Deposition Simulations in Health and Emphysema: From In Vivo to In Silico Animal Experiments, Annals of Biomedical Engineering, vol.114, issue.2, pp.899-914, 2014.
DOI : 10.1007/s10439-013-0954-8
URL : https://hal.archives-ouvertes.fr/hal-00916348

J. M. Oakes, M. Scadeng, E. C. Breen, A. L. Marsden, and C. Darquenne, Rat airway morhometry measured from in-situ MRI-based geometric models, Journal of Applied Physiology, vol.112, 1921.

J. M. Oakes, M. Scadeng, E. C. Breen, G. K. Prisk, and C. Darquenne, Regional Distribution of Aerosol Deposition in Rat Lungs Using Magnetic Resonance Imaging, Annals of Biomedical Engineering, vol.63, issue.5, pp.967-978, 2013.
DOI : 10.1007/s10439-013-0745-2

T. J. Pedley, R. C. Schroter, and M. F. Sudlow, The prediction of pressure drop and variation of resistance within the human bronchial airways, Respiration Physiology, vol.9, issue.3, pp.387-405, 1970.
DOI : 10.1016/0034-5687(70)90094-0

A. Rubini, E. L. Carniel, A. Parmagnani, and A. N. Natali, Flow and Volume Dependence of Rat Airway Resistance During Constant Flow Inflation and Deflation, Lung, vol.30, issue.6, pp.511-519, 2011.
DOI : 10.1007/s00408-011-9318-z

O. Schmid, I. Bolle, V. Harder, E. Karg, S. Takenaka et al., Model for the Deposition of Aerosol Particles in the Respiratory Tract of the Rat. I. Nonhygroscopic Particle Deposition, Journal of Aerosol Medicine and Pulmonary Drug Delivery, vol.21, issue.3, pp.291-307, 2008.
DOI : 10.1089/jamp.2008.0689

S. C. Shadden, FlowVC (Version 1) [Computer software, 2010.

T. D. Sweeney, J. D. Brain, S. Leavitt, and J. J. Godleski, Emphysema alters the deposition pattern of inhaled particles in hamsters, The American journal of Pathology, vol.128, pp.19-28, 1987.

W. M. Thurlbeck and N. L. Muller, Emphysema: definition, imaging, and quantification., American Journal of Roentgenology, vol.163, issue.5, pp.1017-1025, 1994.
DOI : 10.2214/ajr.163.5.7976869

C. Van-ertbruggen, P. Corieri, R. Theunissen, M. L. Riethmuller, and C. Darquenne, Validation of CFD predictions of flow in a 3D alveolated bend with experimental data, Journal of Biomechanics, vol.41, issue.2, pp.399-405, 2009.
DOI : 10.1016/j.jbiomech.2007.08.013

R. R. Wright, Bronchial atrophy and collapse in chronic obstructive pulmonary emphysema, American Journal of Pathology, vol.37, pp.63-77, 1960.

H. C. Yeh, G. M. Schum, and M. T. Duggan, Anatomic Models of the tracheobronchial and pulmonary regions of the rat, The Anatomical Record, vol.15, issue.3, pp.483-92, 1979.
DOI : 10.1002/ar.1091950308

Z. Zhang and C. Kleinstreuer, Effect of Particle Inlet Distributions on Deposition in a Triple Bifurcation Lung Airway Model, Journal of Aerosol Medicine, vol.14, issue.1, pp.13-29, 2001.
DOI : 10.1089/08942680152007864