K. Avinash, F. Nausheen, D. Arpita, S. Manish, and C. Manoj, Extreme Classification of PubMed Articles usingMeSH Labels, Working Notes for the Conference and Labs of the Evaluation Forum (CLEF), 2015.

G. Balikas, I. Partalas, A. Ngomo, A. Krithara, E. Gaussier et al., Results of the bioasq track of the question answering lab at clef 2014. Results of the BioASQ Track of the Question Answering Lab at CLEF, pp.1181-93, 2014.

P. Baudis and J. Sedivy, Biomedical Question Answering using the YodaQA System: Prototype Notes, Working Notes for the Conference and Labs of the Evaluation Forum (CLEF), 2015.

S. Choi, SNUMedinfo at CLEF QA track BioASQ 2015, Working Notes for the Conference and Labs of the Evaluation Forum (CLEF), 2015.

S. Choi, J. Choi, S. Yoo, H. Kim, and Y. Lee, Semantic concept-enriched dependence model for medical information retrieval, Journal of Biomedical Informatics, vol.47, pp.18-27, 2014.
DOI : 10.1016/j.jbi.2013.08.013

J. Demsar, Statistical Comparisons of Classifiers over Multiple Data Sets, Journal of Machine Learning Research, vol.7, pp.1-30, 2006.

N. Fiorini, S. Ranwez, S. Harispe1, J. Montmain, and V. Ranwez, USI at BioASQ 2015: a semantic similarity-based approach for semantic indexing, Working Notes for the Conference and Labs of the Evaluation Forum (CLEF), 2015.
URL : https://hal.archives-ouvertes.fr/hal-01288396

M. Huang, A. Nvol, and Z. Lu, Recommending MeSH terms for annotating biomedical articles, Journal of the American Medical Informatics Association, vol.18, issue.5, pp.660-667, 2011.
DOI : 10.1136/amiajnl-2010-000055

C. Susan, R. Schmidt-alan, G. Aronson-james, D. Mork, and . Demner-fushman, Recent enhancements to the nlm medical text indexer, Working Notes for the Conference and Labs of the Evaluation Forum (CLEF), 2014.

A. Kosmopoulos, I. Partalas, and E. Gaussier, Georgios Paliouras, and Ion Androutsopoulos. Evaluation Measures for Hierarchical Classification: a unified view and novel approaches. CoRR, abs/1306, 2013.

C. Lin, ROUGE: A package for automatic evaluation of summaries, Proceedings of the ACL workshop 'Text Summarization Branches Out, pp.74-81, 2004.

P. Malakasiotis, E. Archontakis, I. Androutsopoulos, D. Galanis, and H. Papageorgiou, Biomedical question-focused multi-document summarization: ILSP and AUEB at BioASQ3, Working Notes for the Conference and Labs of the Evaluation Forum (CLEF), 2015.

Y. Mao and Z. Lu, NCBI at the 2015 BioASQ challenge task: Baseline results from MeSH Now, Working Notes for the Conference and Labs of the Evaluation Forum (CLEF), 2015.

M. Neves, HPI question answering system in the BioASQ 2015 challenge, Working Notes for the Conference and Labs of the Evaluation Forum (CLEF), 2015.

Y. Papanikolaou, G. Tsoumakas, M. Laliotis, N. Markantonatos, and I. Vlahavas, AUTH-Atypon at BioASQ 3: Large-Scale Semantic Indexing in Biomedicine, Working Notes for the Conference and Labs of the Evaluation Forum (CLEF), 2015.

S. Peng, R. You, Z. Xie, Y. Zhang, and S. Zhu, The Fudan participation in the 2015 BioASQ Challenge: Large-scale Biomedical Semantic Indexing and Question Answering, Working Notes for the Conference and Labs of the Evaluation Forum (CLEF), 2015.

F. J. Ribadas, L. M. De-campos, M. Víctor, A. E. Darriba1, and . Romero, CoLe and UTAI at BioASQ 2015: experiments with similarity based descriptor assignment, Working Notes for the Conference and Labs of the Evaluation Forum (CLEF), 2015.

T. Strohman, D. Metzler, H. Turtle, and W. Croft, Indri: A language model-based search engine for complex queries, Proceedings of the International Conference on Intelligent Analysis, pp.2-6, 2005.

L. Tang, S. Rajan, and V. K. Narayanan, Large scale multi-label classification via metalabeler, Proceedings of the 18th international conference on World wide web, WWW '09, pp.211-220, 2009.
DOI : 10.1145/1526709.1526738

G. Tsatsaronis, G. Balikas, P. Malakasiotis, I. Partalas, M. Zschunke et al., An overview of the BIOASQ large-scale biomedical semantic indexing and question answering competition, BMC Bioinformatics, vol.25, issue.22, p.138, 2015.
DOI : 10.1093/bioinformatics/btp535

URL : https://hal.archives-ouvertes.fr/hal-01156600

G. Tsoumakas, I. Katakis, and I. Vlahavas, Mining Multi-label Data, Data Mining and Knowledge Discovery Handbook, pp.667-685, 2010.
DOI : 10.1007/978-0-387-09823-4_34

Z. Yang, N. Gupta, X. Sun, D. Xu, C. Zhang et al., Learning to Answer Biomedical Factoid and List Questions OAQA at BioASQ 3B, Working Notes for the Conference and Labs of the Evaluation Forum (CLEF), 2015.

H. Yenala, A. Kamineni, M. Shrivastava, and M. Chinnakotla, BioASQ 3b Challange 2015: Bio-Medical Question Answering System, Working Notes for the Conference and Labs of the Evaluation Forum (CLEF), 2015.

Z. Zhang, T. Liu, B. Zhang, Y. Li, C. Zhao et al., A generic retrieval system for biomedical literatures: USTB at BioASQ2015 Question Answering Task, Working Notes for the Conference and Labs of the Evaluation Forum (CLEF), 2015.