Origins of the machinery of recombination and sex, Heredity, vol.88, issue.2, pp.125-166, 2002. ,
DOI : 10.1038/sj.hdy.6800034
On the Origin of Sexual Reproduction, Science, vol.324, issue.5932, pp.1254-1260, 2009. ,
DOI : 10.1126/science.324_1254
Origins of Eukaryotic Sexual Reproduction, Cold Spring Harbor Perspectives in Biology, vol.6, issue.3, p.16154, 2014. ,
DOI : 10.1101/cshperspect.a016154
Using a meiosis detection toolkit to investigate ancient asexual ???scandals??? and the evolution of sex, BioEssays, vol.107, issue.6, pp.579-89, 2008. ,
DOI : 10.1002/bies.20764
A Phylogenomic Inventory of Meiotic Genes, Current Biology, vol.15, issue.2, pp.185-91, 2005. ,
DOI : 10.1016/j.cub.2005.01.003
An Expanded Inventory of Conserved Meiotic Genes Provides Evidence for Sex in Trichomonas vaginalis, PLoS ONE, vol.23, issue.8, p.2879, 2008. ,
DOI : 10.1371/journal.pone.0002879.s001
Estimating the timing of early eukaryotic diversification with multigene molecular clocks, Proceedings of the National Academy of Sciences, vol.108, issue.33, pp.13624-13633, 2011. ,
DOI : 10.1073/pnas.1110633108
The Genome of Naegleria gruberi Illuminates Early Eukaryotic Versatility, Cell, vol.140, issue.5, pp.631-673, 2010. ,
DOI : 10.1016/j.cell.2010.01.032
Meiosis Gene Inventory of Four Ciliates Reveals the Prevalence of a Synaptonemal Complex-Independent Crossover Pathway, Molecular Biology and Evolution, vol.31, issue.3, pp.660-72, 2014. ,
DOI : 10.1093/molbev/mst258
Conserved Meiotic Genes Point to Sex in the Choanoflagellates, Journal of Eukaryotic Microbiology, vol.57, issue.1, pp.56-62, 2010. ,
DOI : 10.1111/j.1550-7408.2009.00450.x
(Alveolata, Dinoflagellata) is Supported by an Inventory of Meiotic Genes, Journal of Eukaryotic Microbiology, vol.9, issue.3, pp.322-329, 2014. ,
DOI : 10.1111/jeu.12110
Primary Production of the Biosphere: Integrating Terrestrial and Oceanic Components, Science, vol.281, issue.5374, pp.237-277, 1998. ,
DOI : 10.1126/science.281.5374.237
Production and dissolution of biogenic silica in the ocean: Revised global estimates, comparison with regional data and relationship to biogenic sedimentation, Global Biogeochemical Cycles, vol.33, issue.3, p.359, 1995. ,
DOI : 10.1029/95GB01070
The Revised Classification of Eukaryotes, Journal of Eukaryotic Microbiology, vol.56, issue.5, pp.429-93, 2012. ,
DOI : 10.1111/j.1550-7408.2012.00644.x
Experimental Studies on Sexual Reproduction in Diatoms, In: International Review of Cytology, vol.237, pp.91-154, 2004. ,
DOI : 10.1016/S0074-7696(04)37003-8
The Diatoms: Biology and Morphology of the Genera, 1990. ,
The Genome of the Diatom Thalassiosira Pseudonana: Ecology, Evolution, and Metabolism, Science, vol.306, issue.5693, pp.79-86, 2004. ,
DOI : 10.1126/science.1101156
The Phaeodactylum genome reveals the evolutionary history of diatom genomes, Nature, vol.9, issue.7219, pp.239-283, 2008. ,
DOI : 10.1038/nature07410
URL : https://hal.archives-ouvertes.fr/cea-00910244
Transformation of Nonselectable Reporter Genes in Marine Diatoms, Marine Biotechnology, vol.1, issue.3, pp.239-51, 1999. ,
DOI : 10.1007/PL00011773
MOLECULAR GENETIC MANIPULATION OF THE DIATOM THALASSIOSIRA PSEUDONANA (BACILLARIOPHYCEAE), Journal of Phycology, vol.42, issue.5, pp.1059-65, 2006. ,
DOI : 10.1126/science.160015
Molecular toolbox for studying diatom biology in Phaeodactylum tricornutum, Gene, vol.406, issue.1-2, pp.23-35, 2007. ,
DOI : 10.1016/j.gene.2007.05.022
The origin and evolution of the diatoms: Their adaptation to a planktonic existence Evolution of primary producers in the sea, pp.207-256, 1988. ,
Homologs of the Sexually Induced Gene 1 (sig1) Product constitute the Stramenopile Mastigonemes, Protist, vol.158, issue.1, pp.77-88, 2007. ,
DOI : 10.1016/j.protis.2006.08.004
Linkage Mapping Identifies the Sex Determining Region as a Single Locus in the Pennate Diatom Seminavis robusta, PLoS ONE, vol.159, issue.3, p.60132, 2013. ,
DOI : 10.1371/journal.pone.0060132.s002
Meiosis genes in Daphnia pulex and the role of parthenogenesis in genome evolution, BMC Evolutionary Biology, vol.9, issue.1, p.78, 2009. ,
DOI : 10.1186/1471-2148-9-78
Aberrant Sporogonic Development of Dmc1 (a Meiotic Recombinase) Deficient Plasmodium berghei Parasites, PLoS ONE, vol.76, issue.12, p.52480, 2012. ,
DOI : 10.1371/journal.pone.0052480.s003
Arabidopsis SPO11-2 functions with SPO11-1 in meiotic recombination, The Plant Journal, vol.33, issue.2, pp.206-222, 2006. ,
DOI : 10.1111/j.1365-313X.2006.02867.x
Essential Role of MCM Proteins in Premeiotic DNA Replication, Molecular Biology of the Cell, vol.13, issue.2, pp.435-479, 2002. ,
DOI : 10.1091/mbc.01-11-0537
Structural maintenance of chromosomes (SMC) proteins. Conserved molecular properties for multiple biological functions, European Journal of Biochemistry, vol.142, issue.1 ,
DOI : 10.1074/jbc.274.11.7302
STAG2 and Rad21 mammalian mitotic cohesins are implicated in meiosis, EMBO reports, vol.409, issue.6, pp.543-50, 2002. ,
DOI : 10.1093/embo-reports/kvf108
RAD51 paralogs: Roles in DNA damage signalling, recombinational repair and tumorigenesis, Seminars in Cell & Developmental Biology, vol.22, issue.8, pp.898-905, 2011. ,
DOI : 10.1016/j.semcdb.2011.07.019
The Coordinated Functions of the E. coli MutS and MutL Proteins in Mismatch Repair, Molecular Cell, vol.12, issue.1, pp.233-279, 2003. ,
DOI : 10.1016/S1097-2765(03)00219-3
Inventory and Phylogenetic Analysis of Meiotic Genes in Monogonont Rotifers, Journal of Heredity, vol.104, issue.3, pp.357-70, 2013. ,
DOI : 10.1093/jhered/est011
The Parasexual Cycle in Candida albicans Provides an Alternative Pathway to Meiosis for the Formation of Recombinant Strains, PLoS Biology, vol.169, issue.5, pp.1084-97, 2008. ,
DOI : 10.1371/journal.pbio.0060110.st006
Nuclear inheritance and genetic exchange without meiosis in the binucleate parasite Giardia intestinalis, Journal of Cell Science, vol.125, issue.10, pp.2523-2555, 2012. ,
DOI : 10.1242/jcs.103879
Life-cycle modification in open oceans accounts for genome variability in a cosmopolitan phytoplankton, The ISME Journal, vol.219, issue.6, pp.1365-77, 2015. ,
DOI : 10.1093/molbev/msq199
URL : https://hal.archives-ouvertes.fr/hal-01245155
SEXUAL REPRODUCTION IN THE PENNATE DIATOMS PSEUDO-NITZSCHIA MULTISERIES AND P. PSEUDODELICATISSIMA (BACILLARIOPHYCEAE), Journal of Phycology, vol.34, issue.1 ,
DOI : 10.1046/j.1529-8817.1998.340126.x
Sexual and vegetative phases in the planktonic diatom Pseudo-nitzschia multistriata, Harmful Algae, vol.8, pp.225-257, 2009. ,
Spo11 and the Formation of DNA Double-Strand Breaks in Meiosis, pp.81-123, 2008. ,
DOI : 10.1007/7050_2007_026
Meiosis-Specific DNA Double-Strand Breaks Are Catalyzed by Spo11, a Member of a Widely Conserved Protein Family, Cell, vol.88, issue.3, pp.375-84, 1997. ,
DOI : 10.1016/S0092-8674(00)81876-0
Mnd1/Hop2 Facilitates Dmc1-Dependent Interhomolog Crossover Formation in Meiosis of Budding Yeast, Molecular and Cellular Biology, vol.26, issue.8, pp.2913-2936, 2006. ,
DOI : 10.1128/MCB.26.8.2913-2923.2006
Mechanistic insights into the role of Hop2-Mnd1 in meiotic homologous DNA pairing, Nucleic Acids Research, vol.42, issue.2, pp.906-923, 2014. ,
DOI : 10.1093/nar/gkt924
Genetic Analysis of Baker's Yeast Msh4-Msh5 Reveals a Threshold Crossover Level for Meiotic Viability, PLoS Genetics, vol.97, issue.8, p.1001083, 2010. ,
DOI : 10.1371/journal.pgen.1001083.s004
hMSH4-hMSH5 Recognizes Holliday Junctions and Forms a Meiosis-Specific Sliding Clamp that Embraces Homologous Chromosomes, Molecular Cell, vol.15, issue.3, pp.437-51, 2004. ,
DOI : 10.1016/j.molcel.2004.06.040
ZMM proteins during meiosis: Crossover artists at work, Chromosome Research, vol.33, issue.5, pp.591-605, 2007. ,
DOI : 10.1007/s10577-007-1150-1
Two Meiotic Crossover Classes Cohabit in Arabidopsis, Current Biology, vol.15, issue.8, pp.692-701, 2005. ,
DOI : 10.1016/j.cub.2005.02.056
ZIP1 is a synaptonemal complex protein required for meiotic chromosome synapsis, Cell, vol.72, issue.3, pp.365-78, 1993. ,
DOI : 10.1016/0092-8674(93)90114-6
RED1: a yeast gene required for the segregation of chromosomes during the reductional division of meiosis., Proceedings of the National Academy of Sciences, vol.85, issue.16, pp.6057-61, 1988. ,
DOI : 10.1073/pnas.85.16.6057
Inter-Homolog Crossing-Over and Synapsis in Arabidopsis Meiosis Are Dependent on the Chromosome Axis Protein AtASY3, PLoS Genetics, vol.162, issue.2, p.1002507, 2012. ,
DOI : 10.1371/journal.pgen.1002507.s011
Cohesin Rec8 is required for reductional chromosome segregation at meiosis, Nature, vol.400, issue.6743, pp.461-465, 1999. ,
DOI : 10.1038/22774
Many functions of the meiotic cohesin, Chromosome Research, vol.33, issue.8, pp.909-933, 2010. ,
DOI : 10.1007/s10577-010-9169-0
Mechanism and control of meiotic recombination initiation, Curr Top Dev Biol, vol.52, pp.1-53, 2001. ,
DOI : 10.1016/S0070-2153(01)52008-6
Roles of RecA homologues Rad51 and Dmc1 during meiotic recombination, Cytogenetic and Genome Research, vol.107, issue.3-4, pp.201-208, 2004. ,
DOI : 10.1159/000080598
The Recombinases DMC1 and RAD51 Are Functionally and Spatially Separated during Meiosis in Arabidopsis, The Plant Cell, vol.24, issue.5, pp.2058-70, 2012. ,
DOI : 10.1105/tpc.112.098459
The Drosophila spn-D gene encodes a RAD51C-like protein that is required exclusively during meiosis, Genetics, vol.165, pp.197-204, 2003. ,
Caenorhabditis elegans Ce-rdh-1/rad-51 functions after double-strand break formation of meiotic recombination, Chromosome Research, vol.11, issue.2, pp.125-160, 2003. ,
DOI : 10.1023/A:1022863814686
Origins and evolution of the recA/RAD51 gene family: Evidence for ancient gene duplication and endosymbiotic gene transfer, Proceedings of the National Academy of Sciences, vol.103, issue.27, pp.10328-10361, 2006. ,
DOI : 10.1073/pnas.0604232103
Distantly related sequences in the alpha-and beta-subunits of ATP synthase, myosin, kinases and other ATP-requiring enzymes and a common nucleotide binding fold, EMBO J, vol.1, pp.945-51, 1982. ,
RecA maintains the integrity of chloroplast DNA molecules in Arabidopsis, Journal of Experimental Botany, vol.61, issue.10, pp.2575-88, 2010. ,
DOI : 10.1093/jxb/erq088
A homolog of Escherichia coli RecA protein in plastids of higher plants., Proceedings of the National Academy of Sciences, vol.89, issue.17, pp.8068-72, 1992. ,
DOI : 10.1073/pnas.89.17.8068
Improved Prediction of Signal Peptides: SignalP 3.0, Journal of Molecular Biology, vol.340, issue.4, pp.783-95, 2004. ,
DOI : 10.1016/j.jmb.2004.05.028
Plastid proteome prediction for diatoms and other algae with secondary plastids of the red lineage, The Plant Journal, vol.13, issue.3, pp.519-547, 2015. ,
DOI : 10.1111/tpj.12734
SEXUAL REPRODUCTION, MATING SYSTEM, AND PROTOPLAST DYNAMICS OF SEMINAVIS (BACILLARIOPHYCEAE)1, Journal of Phycology, vol.11, issue.5, pp.1004-1023, 2002. ,
DOI : 10.1046/j.1529-8817.1999.3510152.x
Bioinformatic analyses implicate the collaborating meiotic crossover/chiasma proteins Zip2, Zip3, and Spo22/Zip4 in ubiquitin labeling, Proceedings of the National Academy of Sciences, vol.102, issue.49, pp.17594-17603, 2005. ,
DOI : 10.1073/pnas.0508581102
The Meiosis-Specific Zip4 Protein Regulates Crossover Distribution by Promoting Synaptonemal Complex Formation Together with Zip2, Developmental Cell, vol.10, issue.6, pp.809-828, 2006. ,
DOI : 10.1016/j.devcel.2006.04.003
Unusual nuclear structures in meiotic prophase of fission yeast: a cytological analysis, The Journal of Cell Biology, vol.121, issue.2, pp.241-56, 1993. ,
DOI : 10.1083/jcb.121.2.241
Organization and pairing of meiotic chromosomes in the ciliate Tetrahymena thermophila, Journal of Cell Science, vol.117, issue.24, pp.5791-801, 2004. ,
DOI : 10.1242/jcs.01504
Meiosis in Aspergillus nidulans: Another example for lacking synaptonemal complexes in the absence of crossover interference, Hereditas, vol.105, issue.2, pp.179-87, 2008. ,
DOI : 10.1111/j.1601-5223.1982.tb00870.x
Whence Meiosis?, Cell, vol.106, issue.6, pp.647-50, 2001. ,
DOI : 10.1016/S0092-8674(01)00500-1
A new role for the mitotic RAD21/SCC1 cohesin in meiotic chromosome cohesion and segregation in the mouse, EMBO reports, vol.5, issue.4, pp.378-84, 2004. ,
DOI : 10.1038/sj.embor.7400121
A Single Cohesin Complex Performs Mitotic and Meiotic Functions in the Protist Tetrahymena, PLoS Genetics, vol.121, issue.3, p.1003418, 2013. ,
DOI : 10.1371/journal.pgen.1003418.s009
Protist Homologs of the Meiotic Spo11 Gene and Topoisomerase VI reveal an Evolutionary History of Gene Duplication and Lineage-Specific Loss, Molecular Biology and Evolution, vol.24, issue.12, pp.2827-2868, 2007. ,
DOI : 10.1093/molbev/msm217
The splicing fate of plant SPO11 genes, Frontiers in Plant Science, vol.9, p.214, 2014. ,
DOI : 10.1186/1471-2156-9-83
Green Evolution and Dynamic Adaptations Revealed by Genomes of the Marine Picoeukaryotes Micromonas, Science, vol.324, issue.5924, pp.268-72, 2009. ,
DOI : 10.1126/science.1167222
URL : https://hal.archives-ouvertes.fr/hal-00693449
Molecular characterization of homologues of both subunits A (SPO11) and B of the archaebacterial topoisomerase 6 in plants, Gene, vol.271, issue.1, pp.81-87, 2001. ,
DOI : 10.1016/S0378-1119(01)00496-6
Rad51 Is an Accessory Factor for Dmc1-Mediated Joint Molecule Formation During Meiosis, Science, vol.337, issue.6099, pp.1222-1227, 2012. ,
DOI : 10.1126/science.1219379
The Importance of Genetic Recombination for Fidelity of Chromosome Pairing in Meiosis, Developmental Cell, vol.5, issue.6, pp.915-940, 2003. ,
DOI : 10.1016/S1534-5807(03)00357-5
The Meiosis-Specific Hop2 Protein of S. cerevisiae Ensures Synapsis between Homologous Chromosomes, Cell, vol.94, issue.3, pp.375-86, 1998. ,
DOI : 10.1016/S0092-8674(00)81480-4
Bipartite stimulatory action of the Hop2-Mnd1 complex on the Rad51 recombinase, Genes & Development, vol.21, issue.14, pp.1747-57, 2007. ,
DOI : 10.1101/gad.1563007
MCM8 Is Required for a Pathway of Meiotic Double-Strand Break Repair Independent of DMC1 in Arabidopsis thaliana, PLoS Genetics, vol.168, issue.1, p.1003165, 2013. ,
DOI : 10.1371/journal.pgen.1003165.s003
URL : https://hal.archives-ouvertes.fr/hal-01190669
REC, Drosophila MCM8, Drives Formation of Meiotic Crossovers, PLoS Genetics, vol.168, issue.3, p.40, 2005. ,
DOI : 10.1371/journal.pgen.0010040.st003
MCM8- and MCM9-Deficient Mice Reveal Gametogenesis Defects and Genome Instability Due to Impaired Homologous Recombination, Molecular Cell, vol.47, issue.4, pp.523-557, 2012. ,
DOI : 10.1016/j.molcel.2012.05.048
URL : https://hal.archives-ouvertes.fr/hal-00733290
The MCM8-MCM9 Complex Promotes RAD51 Recruitment at DNA Damage Sites To Facilitate Homologous Recombination, Molecular and Cellular Biology, vol.33, issue.8, pp.1632-1676, 2013. ,
DOI : 10.1128/MCB.01503-12
Arabidopsis RAD51C Gene Is Important for Homologous Recombination in Meiosis and Mitosis, PLANT PHYSIOLOGY, vol.139, issue.2, pp.896-908, 2005. ,
DOI : 10.1104/pp.105.065243
The Arabidopsis homologue of Xrcc3 plays an essential role in meiosis, The EMBO Journal, vol.23, issue.2, pp.439-488, 2004. ,
DOI : 10.1038/sj.emboj.7600055
URL : https://hal.archives-ouvertes.fr/inserm-00595813
The Synaptonemal Complex in Genetic Segregation, Annual Review of Genetics, vol.18, issue.1, pp.331-413, 1984. ,
DOI : 10.1146/annurev.ge.18.120184.001555
The Arabidopsis synaptonemal complex protein ZYP1 is required for chromosome synapsis and normal fidelity of crossing over, Genes & Development, vol.19, issue.20, pp.2488-500, 2005. ,
DOI : 10.1101/gad.354705
Zip3 Provides a Link between Recombination Enzymes and Synaptonemal Complex Proteins, Cell, vol.102, issue.2, pp.245-55, 2000. ,
DOI : 10.1016/S0092-8674(00)00029-5
Meiotic recombination intermediates and mismatch repair proteins, Cytogenetic and Genome Research, vol.107, issue.3-4, pp.232-280, 2004. ,
DOI : 10.1159/000080601
Mouse Sycp1 functions in synaptonemal complex assembly, meiotic recombination, and XY body formation, Genes & Development, vol.19, issue.11, pp.1376-89, 2005. ,
DOI : 10.1101/gad.329705
Chromosome synapsis in Arabidopsis: analysis of the transverse filament protein ZYP1 reveals novel functions for the synaptonemal complex, Chromosoma, vol.33, issue.3, pp.212-221, 2006. ,
DOI : 10.1007/s00412-005-0042-4
Correction: ZHP-3 Acts at Crossovers to Couple Meiotic Recombination with Synaptonemal Complex Disassembly and Bivalent Formation in C. elegans, PLoS Genetics, vol.4, issue.11, p.1000235, 2008. ,
DOI : 10.1371/annotation/ffbb52bd-7ceb-404c-8c96-93577bf83932
ZIP4H (TEX11) Deficiency in the Mouse Impairs Meiotic Double Strand Break Repair and the Regulation of Crossing Over, PLoS Genetics, vol.5, issue.3, p.1000042, 2008. ,
DOI : 10.1371/journal.pgen.1000042.s007
The Arabidopsis HEI10 Is a New ZMM Protein Related to Zip3, PLoS Genetics, vol.24, issue.7, p.1002799, 2012. ,
DOI : 10.1371/journal.pgen.1002799.s010
URL : https://hal.archives-ouvertes.fr/hal-01190765
Zip4/Spo22 Is Required for Class I CO Formation but Not for Synapsis Completion in Arabidopsis thaliana, PLoS Genetics, vol.143, issue.5, p.83, 2007. ,
DOI : 10.1371/journal.pgen.0030083.sg003
DNA double-strand breaks, but not crossovers, are required for the reorganization of meiotic nuclei in Tetrahymena, Journal of Cell Science, vol.121, issue.13, pp.2148-58, 2008. ,
DOI : 10.1242/jcs.031799
(Bacillariophyta), British Phycological Journal, vol.1972, issue.2, pp.167-81, 1989. ,
DOI : 10.1016/0014-4827(69)90451-0
Observations on the fine structure and development of the spindle at mitosis and meiosis in a marine centric diatom (Lithodesmium undulatum), Journal of Microscopy, vol.22, issue.3, pp.295-320, 1969. ,
DOI : 10.1111/j.1365-2818.1969.tb00678.x
Electron microscope observations of diatoms, ???sterreichische Botanische Zeitschrift, vol.59, issue.1-5, pp.321-351, 1969. ,
DOI : 10.1007/BF01379632
Biochemistry and genetics of eukaryotic mismatch repair., Genes & Development, vol.10, issue.12, pp.1433-1475, 1996. ,
DOI : 10.1101/gad.10.12.1433
A phylogenomic study of the MutS family of proteins, Nucleic Acids Research, vol.26, issue.18, pp.4291-300, 1998. ,
DOI : 10.1093/nar/26.18.4291
The Arabidopsis MutS homolog AtMSH4 functions at an early step in recombination: evidence for two classes of recombination in Arabidopsis, Genes & Development, vol.18, issue.20, pp.2557-70, 2004. ,
DOI : 10.1101/gad.317504
The MUS81/MMS4 endonuclease acts independently of double-holliday junction resolution to promote a distinct subset of crossovers during meiosis in budding yeast, Genetics, vol.164, pp.81-94, 2003. ,
Mechanisms and functions of DNA mismatch repair, Cell Research, vol.62, issue.1, pp.85-98, 2008. ,
DOI : 10.1126/science.7761852
Mispair-specific Recruitment of the Mlh1-Pms1 Complex Identifies Repair Substrates of the Saccharomyces cerevisiae Msh2-Msh3 Complex, Journal of Biological Chemistry, vol.289, issue.13, pp.9352-64, 2014. ,
DOI : 10.1074/jbc.M114.552190
DNA mismatch repair and mutation avoidance pathways, Journal of Cellular Physiology, vol.6, issue.1, pp.28-41, 2002. ,
DOI : 10.1002/jcp.10077
Diatom reproductive biology: Living in a crystal cage, Int J Plant Reprod Biol, vol.2, pp.1-10, 2010. ,
Evolution of centric diatoms inferred from patterns of oogenesis and spermatogenesis, Phycological Research, vol.32, issue.Suppl., pp.156-65, 2008. ,
DOI : 10.1111/j.1440-1835.2008.00497.x
Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga, Nature, vol.19, issue.7463, pp.453-460, 2013. ,
DOI : 10.1038/nature12326
URL : https://hal.archives-ouvertes.fr/hal-01282538
Culture of phytoplankton for feeding marine invertebrates Culture of Marine Invertebrate Animals, pp.29-60, 1975. ,
TRAPID: an efficient online tool for the functional and comparative analysis of de novo RNA-Seq transcriptomes, Genome Biology, vol.14, issue.12, p.134, 2013. ,
DOI : 10.1186/1471-2105-10-356
HMMER web server: interactive sequence similarity searching, Nucleic Acids Research, vol.39, issue.suppl, pp.29-37, 2011. ,
DOI : 10.1093/nar/gkr367
MUSCLE: multiple sequence alignment with high accuracy and high throughput, Nucleic Acids Research, vol.32, issue.5, pp.1792-1799, 2004. ,
DOI : 10.1093/nar/gkh340
MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0, Molecular Biology and Evolution, vol.30, issue.12, pp.2725-2734, 2013. ,
DOI : 10.1093/molbev/mst197
Physiological and Transcriptomic Evidence for a Close Coupling between Chloroplast Ontogeny and Cell Cycle Progression in the Pennate Diatom Seminavis robusta, PLANT PHYSIOLOGY, vol.148, issue.3, pp.1394-411, 2008. ,
DOI : 10.1104/pp.108.122176
Trimmomatic: a flexible trimmer for Illumina sequence data, Bioinformatics, vol.30, issue.15, pp.2114-2134, 2014. ,
DOI : 10.1093/bioinformatics/btu170
Full-length transcriptome assembly from RNA-Seq data without a reference genome, Nature Biotechnology, vol.30, issue.7, pp.644-52, 2011. ,
DOI : 10.1101/GR.229202. ARTICLE PUBLISHED ONLINE BEFORE MARCH 2002
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome, Genome Biology, vol.10, issue.3, p.25, 2009. ,
DOI : 10.1186/gb-2009-10-3-r25
The Sequence Alignment/Map format and SAMtools, Bioinformatics, vol.25, issue.16, pp.2078-2087, 2009. ,
DOI : 10.1093/bioinformatics/btp352
RNA-Seq analysis in MeV, Bioinformatics, vol.27, issue.22, pp.3209-3219, 2011. ,
DOI : 10.1093/bioinformatics/btr490
Clustal W and Clustal X version 2.0, Bioinformatics, vol.23, issue.21, pp.2947-2955, 2007. ,
DOI : 10.1093/bioinformatics/btm404
URL : https://hal.archives-ouvertes.fr/hal-00206210
Selection and validation of reference genes for qPCR analysis in the pennate diatoms Pseudo-nitzschia multistriata and P. arenysensis, Journal of Experimental Marine Biology and Ecology, vol.451, pp.74-81, 2014. ,
DOI : 10.1016/j.jembe.2013.11.003
Relative expression software tool (REST(C)) for group-wise comparison and statistical analysis of relative expression results in real-time PCR, Nucleic Acids Research, vol.30, issue.9, p.36, 2002. ,
DOI : 10.1093/nar/30.9.e36
Forkhead-Associated Domain of Yeast Xrs2, a Homolog of Human Nbs1, Promotes Nonhomologous End Joining Through Interaction With a Ligase IV Partner Protein, Lif1, Genetics, vol.179, issue.1, pp.213-238, 2008. ,
DOI : 10.1534/genetics.107.079236
Saccharomyces cerevisiae Mer3 Is a DNA Helicase Involved in Meiotic Crossing Over, Molecular and Cellular Biology, vol.22, issue.10, pp.3281-91, 2002. ,
DOI : 10.1128/MCB.22.10.3281-3291.2002
FANCM Limits Meiotic Crossovers, Science, vol.336, issue.6088, pp.1588-90, 2012. ,
DOI : 10.1126/science.1220381
URL : https://hal.archives-ouvertes.fr/hal-01004174
Fen-1 Facilitates Homologous Recombination by Removing Divergent Sequences at DNA Break Ends, Molecular and Cellular Biology, vol.25, issue.16, pp.6948-55, 2005. ,
DOI : 10.1128/MCB.25.16.6948-6955.2005
Identification and characterization of Saccharomyces cerevisiae EXO1, a gene encoding an exonuclease that interacts with MSH2, Proceedings of the National Academy of Sciences, vol.94, issue.14, pp.7487-92, 1997. ,
DOI : 10.1073/pnas.94.14.7487
Human Dna2 Is a Nuclear and Mitochondrial DNA Maintenance Protein, Molecular and Cellular Biology, vol.29, issue.15, pp.4274-82, 2009. ,
DOI : 10.1128/MCB.01834-08
BRCA1 Is Required for Meiotic Spindle Assembly and Spindle Assembly Checkpoint Activation in Mouse Oocytes1, Biology of Reproduction, vol.79, issue.4, pp.718-744, 2008. ,
DOI : 10.1095/biolreprod.108.069641
BRCA2 acts as a RAD51 loader to facilitate telomere replication and capping, Nature Structural & Molecular Biology, vol.14, issue.9, pp.1461-1470, 2010. ,
DOI : 10.1038/nsmb.1943
Draft genome sequence and genetic transformation of the oleaginous alga Nannochloropis gaditana, Nature Communications, vol.313, p.686, 2012. ,
DOI : 10.1038/ncomms1688
Meiosis, recombination and chromosomes: a review of gene isolation and fluorescent in situ hybridization data in plants, Journal of Experimental Botany, vol.54, issue.380, pp.11-23, 2003. ,
DOI : 10.1093/jxb/erg042
Pathways to meiotic recombination in Arabidopsis thaliana, New Phytologist, vol.33, issue.3, pp.523-567, 2011. ,
DOI : 10.1111/j.1469-8137.2011.03665.x
Ten Years of Gene Discovery for Meiotic Event Control in Rice, Journal of Genetics and Genomics, vol.41, issue.3, pp.125-162, 2014. ,
DOI : 10.1016/j.jgg.2014.02.002
Meiotic recombination in mammals: localization and regulation, Nature Reviews Genetics, vol.86, issue.11, pp.794-806, 2013. ,
DOI : 10.1016/j.molcel.2005.09.021
URL : https://hal.archives-ouvertes.fr/hal-00875210
Gene Discovery Using Computational and Microarray Analysis of Transcription in the Drosophila melanogaster Testis, Genome Research, vol.10, issue.12, pp.2030-2073, 2000. ,
DOI : 10.1101/gr.10.12.2030
Meiotic recombination in Caenorhabditis elegans, Chromosome Research, vol.33, issue.5, pp.607-628, 2007. ,
DOI : 10.1007/s10577-007-1146-x
The Sum1/Ndt80 Transcriptional Switch and Commitment to Meiosis in Saccharomyces cerevisiae, Microbiology and Molecular Biology Reviews, vol.76, issue.1, pp.1-15, 2012. ,
DOI : 10.1128/MMBR.05010-11
Msh4 and Msh5 Function in SC-Independent Chiasma Formation During the Streamlined Meiosis of Tetrahymena, Genetics, vol.198, issue.3, pp.983-93, 2014. ,
DOI : 10.1534/genetics.114.169698
The Recombinases Rad51 and Dmc1 Play Distinct Roles in DNA Break Repair and Recombination Partner Choice in the Meiosis of Tetrahymena, PLoS Genetics, vol.140, issue.3, p.1001359, 2011. ,
DOI : 10.1371/journal.pgen.1001359.s006