A. Plyusnin and T. Sironen, Evolution of hantaviruses: Co-speciation with reservoir hosts for more than 100MYR, Virus Research, vol.187, pp.22-26, 2014.
DOI : 10.1016/j.virusres.2014.01.008

A. Vaheri, T. Strandin, J. Hepojoki, T. Sironen, H. Henttonen et al., Uncovering the mysteries of hantavirus infections, Nature Reviews Microbiology, vol.129, issue.8, pp.539-550, 2013.
DOI : 10.1038/nrmicro3066

Y. Zhang, Discovery of hantaviruses in bats and insectivores and the evolution of the genus Hantavirus, Virus Research, vol.187, issue.187, pp.15-21
DOI : 10.1016/j.virusres.2013.12.035

K. M. Jaaskelainen, P. Kaukinen, E. S. Minskaya, A. Plyusnina, O. Vapalahti et al., Tula and Puumala hantavirus NSs ORFs are functional and the products inhibit activation of the interferon-beta promoter, Journal of Medical Virology, vol.77, issue.10, pp.1527-1536, 2007.
DOI : 10.1002/jmv.20948

A. Plyusnin, Genetics of hantaviruses: implications to taxonomy, Archives of Virology, vol.147, issue.4, pp.665-682, 2002.
DOI : 10.1007/s007050200017

A. Vaheri, H. Henttonen, L. Voutilainen, J. Mustonen, T. Sironen et al., Hantavirus infections in Europe and their impact on public health, Reviews in Medical Virology, vol.109, issue.28, pp.35-49, 2013.
DOI : 10.1002/rmv.1722

G. E. Olsson, H. Leirs, and H. Henttonen, Hantaviruses and their hosts in Europe: Reservoirs here and there, but not everywhere? Vector Borne Zoonot. Dis, pp.549-561, 2010.

A. Plyusnin, O. Vapalahti, K. Ulfves, H. Lehväslaiho, N. Apekina et al., Sequences of wild Puumala virus genes show a correlation of genetic variation with geographic origin of the strains, Journal of General Virology, vol.75, issue.2, pp.405-409, 1994.
DOI : 10.1099/0022-1317-75-2-405

A. Heiske, B. Anheier, J. Pilaski, V. E. Volchkov, and H. Feldmann, A new Clethrionomys-derived hantavirus from Germany: evidence for distinct genetic sublineages of Puumala viruses in Western Europe, Virus Research, vol.61, issue.2, pp.101-112, 1999.
DOI : 10.1016/S0168-1702(99)00024-6

L. Karelle-bui, A. Vaheri, and P. P. Pastoret, Genetic characterization of Puumala hantavirus strains from Belgium: Evidence for a distinct phylogenetic lineage, Virus Res, vol.74, pp.1-15, 2001.

A. Plyusnina, S. W. Aberle, J. H. Aberle, and A. Plyusnin, Genetic analysis of Puumala hantavirus strains from Austria. Scand, J. Infect. Dis, vol.38, pp.512-519, 2006.

M. Razzauti, A. Plyusnina, J. Niemimaa, H. Henttonen, and A. Plyusnin, Co-circulation of two Puumala hantavirus lineages in Latvia: A russian lineage described previously and a novel Latvian lineage, Journal of Medical Virology, vol.281, issue.2, pp.314-318, 2012.
DOI : 10.1002/jmv.22263

A. Vaheri and A. Plyusnin, Molecular evolution of puumala hantavirus in Fennoscandia: Phylogenetic analysis of strains from two recolonization routes, Karelia and Denmark, J. Gen. Virol, vol.81, pp.2833-2841, 2000.

J. Horling, A. Lundkvist, M. Jaarola, A. Plyusnin, H. Tegelström et al., Distribution and genetic heterogeneity of Puumala virus in Sweden, Journal of General Virology, vol.77, issue.10, pp.2555-2562, 1996.
DOI : 10.1099/0022-1317-77-10-2555

P. Johansson, G. E. Olsson, H. T. Low, G. Bucht, C. Ahlm et al., Puumala hantavirus genetic variability in an endemic region (Northern Sweden), Infection, Genetics and Evolution, vol.8, issue.3, pp.286-296, 2008.
DOI : 10.1016/j.meegid.2008.01.003

R. S. Sikes and W. L. Gannon, Guidelines of the American Society of Mammalogists for the use of wild mammals in research, Journal of Mammalogy, vol.92, issue.1, pp.235-253, 2011.
DOI : 10.1644/10-MAMM-F-355.1

A. Billecocq, D. Coudrier, F. Boué, B. Combes, H. Zeller et al., Expression of the Nucleoprotein of the Puumala Virus from the Recombinant Semliki Forest Virus Replicon: Characterization and Use as a Potential Diagnostic Tool, Clinical and Vaccine Immunology, vol.10, issue.4, pp.658-663, 2003.
DOI : 10.1128/CDLI.10.4.658-663.2003

A. Plyusnina, M. Razzauti, T. Sironen, J. Niemimaa, O. Vapalahti et al., Analysis of Complete Puumala Virus Genome, Finland, Emerging Infectious Diseases, vol.18, issue.11, pp.2070-2072, 2012.
DOI : 10.3201/eid1811.120747

B. E. Pickett, D. S. Greer, Y. Zhang, L. Stewart, L. Zhou et al., Virus Pathogen Database and Analysis Resource (ViPR): A Comprehensive Bioinformatics Database and Analysis Resource for the Coronavirus Research Community, Viruses, vol.4, issue.12, pp.3209-3226, 2012.
DOI : 10.3390/v4113209

Z. Gu, ViPR: An open bioinformatics database and analysis resource for virology research, Nucleic Acids Res, vol.2012, issue.40, pp.593-598

M. Gouy, S. Guindon, and O. Gascuel, SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building, Molecular Biology and Evolution, vol.27, issue.2, pp.221-224, 2010.
DOI : 10.1093/molbev/msp259
URL : https://hal.archives-ouvertes.fr/lirmm-00705187

S. Guindon, J. F. Dufayard, V. Lefort, M. Anisimova, W. Hordijk et al., New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0, Systematic Biology, vol.59, issue.3, pp.307-321, 2010.
DOI : 10.1093/sysbio/syq010
URL : https://hal.archives-ouvertes.fr/lirmm-00511784

K. Tamura, G. Stecher, D. Peterson, A. Filipski, and S. Kumar, MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0, Molecular Biology and Evolution, vol.30, issue.12, pp.2725-2729, 2013.
DOI : 10.1093/molbev/mst197

M. D. Bowen, W. Gelbmann, T. G. Ksiazek, S. T. Nichol, and N. Nowotny, Puumala virus and two genetic variants of tula virus are present in Austrian rodents, Journal of Medical Virology, vol.198, issue.2, pp.174-181, 1997.
DOI : 10.1002/(SICI)1096-9071(199710)53:2<174::AID-JMV11>3.0.CO;2-J

A. Plyusnina, J. Deter, N. Charbonnel, J. F. Cosson, A. Plyusnin et al., Puumala and Tula hantaviruses in France, Virus Research, vol.129, issue.1, pp.58-63, 2007.
DOI : 10.1016/j.virusres.2007.04.023

M. Razzauti, A. Plyusnina, H. Henttonen, and A. Plyusnin, Accumulation of point mutations and reassortment of genomic RNA segments are involved in the microevolution of Puumala hantavirus in a bank vole (Myodes glareolus) population, Journal of General Virology, vol.89, issue.7, pp.1649-1660, 2008.
DOI : 10.1099/vir.0.2008/001248-0

M. Razzauti, A. Plyusnina, H. Henttonen, and A. Plyusnin, Microevolution of Puumala hantavirus during a Complete Population Cycle of Its Host, the Bank Vole (Myodes glareolus), PLoS ONE, vol.147, issue.1, p.64447, 2013.
DOI : 10.1371/journal.pone.0064447.t006

G. Castel, M. Razzauti, E. Jousselin, G. J. Kergoat, and J. Cosson, Changes in Diversification Patterns and Signatures of Selection during the Evolution of Murinae-Associated Hantaviruses, Viruses, vol.6, issue.3, pp.1112-1134, 2014.
DOI : 10.3390/v6031112
URL : https://hal.archives-ouvertes.fr/hal-01011063

U. Omasits, C. H. Ahrens, S. Müller, and B. Wollscheid, Protter: interactive protein feature visualization and integration with experimental proteomic data, Bioinformatics, vol.30, issue.6, pp.884-886
DOI : 10.1093/bioinformatics/btt607

P. Gott, L. Zöller, G. Darai, and E. K. Bautz, A major antigenic domain of hantaviruses is located on the aminoproximal site of the viral nucleocapsid protein, Virus Genes, vol.14, issue.1, pp.31-40, 1997.
DOI : 10.1023/A:1007983306341

F. Elgh, A. Lundkvist, O. A. Alexeyev, G. Wadell, and P. Juto, A major antigenic domain for the human humoral response to Puumala virus nucleocapsid protein is located at the aminoterminus, Journal of Virological Methods, vol.59, issue.1-2, pp.161-172, 1996.
DOI : 10.1016/0166-0934(96)02042-3

A. Lundkvist, H. Kallio-kokko, K. B. Sjölander, H. Lankinen, B. Niklasson et al., Characterization of Puumala Virus Nucleocapsid Protein: Identification of B-Cell Epitopes and Domains Involved in Protective Immunity, Virology, vol.216, issue.2, pp.397-406, 1996.
DOI : 10.1006/viro.1996.0075

M. G. Katze, J. L. Fornek, R. E. Palermo, K. A. Walters, and M. J. Korth, Innate immune modulation by RNA viruses: emerging insights from functional genomics, Nature Reviews Immunology, vol.29, issue.8, pp.644-654, 2008.
DOI : 10.1038/nri2377

M. Sadeghi, I. Eckerle, V. Daniel, U. Burkhardt, G. Opelz et al., Cytokine expression during early and late phase of acute Puumala hantavirus infection, BMC Immunology, vol.12, issue.1, p.65, 2011.
DOI : 10.1073/pnas.0707454104

N. Charbonnel, M. Pagès, T. Sironen, H. Henttonen, O. Vapalahti et al., Immunogenetic Factors Affecting Susceptibility of Humans and Rodents to Hantaviruses and the Clinical Course of Hantaviral Disease in Humans, Viruses, vol.6, issue.5, pp.2214-2241, 2014.
DOI : 10.3390/v6052214
URL : https://hal.archives-ouvertes.fr/hal-01190031

F. Sauvage, C. Penalba, P. Vuillaume, F. Boue, D. Coudrier et al., Infection in Humans and in the Reservoir Host, Ardennes Region, France, Emerging Infectious Diseases, vol.8, issue.12, pp.1509-1511, 2002.
DOI : 10.3201/eid0812.010518
URL : https://hal.archives-ouvertes.fr/hal-00427299

F. Sauvage, M. Langlais, and D. Pontier, Predicting the emergence of human hantavirus disease using a combination of viral dynamics and rodent demographic patterns, Epidemiology and Infection, vol.135, issue.01, pp.46-56, 2007.
DOI : 10.1017/S0950268806006595
URL : https://hal.archives-ouvertes.fr/hal-00195448

J. M. Reynes, C. M. Dutrop, D. Carli, M. Levast, N. Fontaine et al., Infection par l???hantavirus Puumala en Is??re??: une extension g??ographique de cette zoonose en France, M??decine et Maladies Infectieuses, vol.45, issue.5, pp.177-180, 2015.
DOI : 10.1016/j.medmal.2015.03.001

Z. M. Hu and D. L. Duan, Insufficient geographical sampling could severely influence phylogeographic interpretations, Marine Biology, vol.156, issue.6, pp.1521-1522, 2013.
DOI : 10.1007/s00227-013-2198-4

T. A. Gutierrez-garcia and E. Vazquez-dominguez, Comparative Phylogeography: Designing Studies while Surviving the Process, BioScience, vol.61, issue.11, pp.857-868, 2011.
DOI : 10.1525/bio.2011.61.11.5