Widespread and frequent horizontal transfers of transposable elements in plants.

Moaine El Baidouri (1) , Marie-Christine Carpentier (1) , Richard Cooke (1) , Dongying Gao (2) , Eric Lasserre (1) , Christel Llauro (1) , Marie Mirouze (3) , Nathalie Picault (1) , Scott A Jackson (2) , Olivier Panaud (1)

1 LGDP - Laboratoire Génome et développement des plantes
2 University of Georgia [USA]
3 UMR DIADE - Diversité, adaptation, développement des plantes

Vertical, transgenerational transmission of genetic material occurs through reproduction of living organisms. In addition to vertical inheritance, horizontal gene transfer between reproductively isolated species has recently been shown to be an important, if not dominant, mechanism in the evolution of prokaryotic genomes. In contrast, only a few horizontal transfer (HT) events have been characterized so far in eukaryotes and mainly concern transposable elements (TEs). Whether these are frequent and have a significant impact on genome evolution remains largely unknown. We performed a computational search for highly conserved LTR retrotransposons among 40 sequenced eukaryotic genomes representing the major plant families. We found that 26 genomes (65%) harbor at least one case of horizontal TE transfer (HTT). These transfers concern species as distantly related as palm and grapevine, tomato and bean, or poplar and peach. In total, we identified 32 cases of HTTs, which could translate into more than 2 million among the 13,551 monocot and dicot genera. Moreover, we show that these TEs have remained functional after their transfer, occasionally causing a transpositional burst. This suggests that plants can frequently exchange genetic material through horizontal transfers and that this mechanism may be important in TE-driven genome evolution.

Domaines: Sciences du Vivant [q-bio]; Biochimie, Biologie Moléculaire; Bio-Informatique, Biologie Systémique [q-bio.QM]; Biologie végétale; Amélioration des plantes; Génétique; Génétique des plantes; Evolution [q-bio.PE]; Systématique, phylogénie et taxonomie; Biochimie [q-bio.BM]; Biologie moléculaire; Biologie structurale [q-bio.BM]; Génomique, Transcriptomique et Protéomique [q-bio.GN]; Réseaux moléculaires [q-bio.MN]; Biologie cellulaire

Moaine El Baidouri, Marie-Christine Carpentier, Richard Cooke, Dongying Gao, Eric Lasserre, et al.. Widespread and frequent horizontal transfers of transposable elements in plants.. Genome Research, 2014, 24 (5), pp.831-8. ⟨10.1101/gr.164400.113⟩. ⟨hal-01218140⟩