N. J. Mulder, R. Apweiler, T. K. Attwood, A. Bairoch, A. Bateman et al., New developments in the InterPro database, Nucleic Acids Research, vol.35, issue.Database, pp.224-228, 2007.
DOI : 10.1093/nar/gkl841

URL : https://hal.archives-ouvertes.fr/hal-00434830

N. Hulo, A. Bairoch, V. Bulliard, L. Cerutti, E. De-castro et al., The PROSITE database, Nucleic Acids Research, vol.34, issue.90001, pp.227-230, 2006.
DOI : 10.1093/nar/gkj063

T. K. Attwood, P. Bradley, D. R. Flower, A. Gaulton, N. Maudling et al., PRINTS and its automatic supplement, prePRINTS, Nucleic Acids Research, vol.31, issue.1, pp.400-402, 2003.
DOI : 10.1093/nar/gkg030

URL : http://doi.org/10.1093/nar/gkg030

R. D. Finn, J. Tate, J. Mistry, P. C. Coggill, J. S. Sammut et al., The Pfam protein families database, Nucleic Acids Research, vol.36, issue.Database, pp.281-288, 2008.
DOI : 10.1093/nar/gkm960

URL : https://hal.archives-ouvertes.fr/hal-01294685

C. Bru, E. Courcelle, S. Carrè-re, Y. Beausse, S. Dalmar et al., The ProDom database of protein domain families: more emphasis on 3D, Nucleic Acids Research, vol.33, issue.Database issue, pp.212-215, 2005.
DOI : 10.1093/nar/gki034

URL : https://hal.archives-ouvertes.fr/hal-01214150

I. Letunic, R. R. Copley, B. Pils, S. Pinkert, J. Schultz et al., SMART 5: domains in the context of genomes and networks, Nucleic Acids Research, vol.34, issue.90001, pp.257-260, 2006.
DOI : 10.1093/nar/gkj079

D. H. Haft, J. D. Selengut, and O. White, The TIGRFAMs database of protein families, Nucleic Acids Research, vol.31, issue.1, pp.371-373, 2003.
DOI : 10.1093/nar/gkg128

A. N. Nikolskaya, C. N. Arighi, H. Huang, W. C. Barker, and C. H. Wu, PIRSF family classification system for protein functional and evolutionary analysis, Evol. Bioinform. Online, vol.2, pp.197-209, 2006.

D. Wilson, M. Madera, C. Vogel, C. Chothia, and J. Gough, The SUPERFAMILY database in 2007: families and functions, Nucleic Acids Research, vol.35, issue.Database, pp.308-313, 2007.
DOI : 10.1093/nar/gkl910

H. Mi, N. Guo, A. Kejariwal, and P. D. Thomas, PANTHER version 6: protein sequence and function evolution data with expanded representation of biological pathways, Nucleic Acids Research, vol.35, issue.Database, pp.247-252, 2007.
DOI : 10.1093/nar/gkl869

C. Yeats, J. Lees, A. Reid, P. Kellam, N. Martin et al., Gene3D: comprehensive structural and functional annotation of genomes, Nucleic Acids Research, vol.36, issue.Database, pp.414-418, 2008.
DOI : 10.1093/nar/gkm1019

URL : http://doi.org/10.1093/nar/gkm1019

E. Quevillon, V. Silventoinen, S. Pillai, N. Harte, N. Mulder et al., InterProScan: protein domains identifier, Nucleic Acids Research, vol.33, issue.Web Server, pp.116-120, 2005.
DOI : 10.1093/nar/gki442

URL : http://doi.org/10.1093/nar/gki442

R. Leinonen, F. G. Diez, D. Binns, W. Fleischmann, R. Lopez et al., UniProt archive, Bioinformatics, vol.20, issue.17, pp.3236-3237, 2004.
DOI : 10.1093/bioinformatics/bth191

K. A. Brayton, A. O. Lau, D. R. Herndon, L. Hannick, L. S. Kappmeyer et al., Genome Sequence of Babesia bovis and Comparative Analysis of Apicomplexan Hemoprotozoa, PLoS Pathogens, vol.31, issue.10, p.148, 2007.
DOI : 10.1371/journal.ppat.0030148.st008

T. Itoh, T. Tanaka1, R. A. Barrero, C. Yamasaki, Y. Fujii et al., Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana, Genome Research, vol.17, issue.2, pp.175-183, 2007.
DOI : 10.1101/gr.5509507

M. A. Harris, J. Clark, A. Ireland, J. Lomax, M. Ashburner et al., The Gene Ontology (GO) database and informatics resource, Nucleic Acids Res, vol.32, pp.258-261, 2004.

N. D. Rawlings, D. P. Tolle, and A. J. Barrett, MEROPS: the peptidase database, Nucleic Acids Research, vol.32, issue.90001, pp.160-164, 2004.
DOI : 10.1093/nar/gkh071

S. Kerrien, Y. Alam-faruque, B. Aranda, I. Bancarz, A. Bridge et al., IntAct--open source resource for molecular interaction data, Nucleic Acids Research, vol.35, issue.Database, pp.561-565, 2007.
DOI : 10.1093/nar/gkl958

R. Petryszak, E. Kretschmann, D. Wieser, and R. Apweiler, The predictive power of the CluSTr database, Bioinformatics, vol.21, issue.18, pp.3604-3609, 2005.
DOI : 10.1093/bioinformatics/bti542

H. Berman, K. Henrick, H. Nakamura, and J. L. Markley, The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data, Nucleic Acids Research, vol.35, issue.Database, pp.301-303, 2007.
DOI : 10.1093/nar/gkl971

U. Pieper, N. Eswar, H. Braberg, M. S. Madhusudhan, F. Davis et al., MODBASE, a database of annotated comparative protein structure models, and associated resources, Nucleic Acids Research, vol.32, issue.90001, pp.217-222, 2004.
DOI : 10.1093/nar/gkh095

URL : https://hal.archives-ouvertes.fr/pasteur-01414232

J. Kopp and T. Schwede, The SWISS-MODEL Repository: new features and functionalities, Nucleic Acids Research, vol.34, issue.90001, pp.315-318, 2006.
DOI : 10.1093/nar/gkj056

URL : http://doi.org/10.1093/nar/gkj056

A. Labarga, F. Valentin, M. Anderson, and R. Lopez, Web Services at the European Bioinformatics Institute, Nucleic Acids Research, vol.35, issue.Web Server, pp.6-11, 2007.
DOI : 10.1093/nar/gkm291

URL : http://doi.org/10.1093/nar/gkm291

A. Prlic, T. Down, and T. J. Hubbard, Adding Some SPICE to DAS, Bioinformatics, vol.21, issue.Suppl 2, pp.40-41, 2005.
DOI : 10.1093/bioinformatics/bti1106

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2656757

R. C. Jiminez, A. F. Quinn, A. Garcia, A. Labarga, K. O-'neill et al., Dasty2, an Ajax protein DAS client, Bioinformatics, vol.24, issue.18, pp.2119-2121, 2008.
DOI : 10.1093/bioinformatics/btn387