Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12, DNA Res, vol.8, pp.11-22, 2001. ,
The microbial pan-genome, Curr Opin Genet Dev, vol.15, pp.589-594, 2005. ,
DNA uptake signal sequences in naturally transformable bacteria, Res Microbiol, vol.150, pp.603-616, 1999. ,
Rec-mediated recombinational hot spot activity in bacteriophage lambda. II. A mutation which causes hot spot activity, Genetics, vol.77, pp.425-433, 1974. ,
Structure of chi hotspots of generalized recombination, Cell, vol.24, pp.429-436, 1981. ,
KOPS: DNA motifs that control E. coli chromosome segregation by orienting the FtsK translocase, Embo J, vol.24, pp.3770-3780, 2005. ,
URL : https://hal.archives-ouvertes.fr/hal-00021178
Identification of oligonucleotide sequences that direct the movement of the Escherichia coli FtsK translocase, Proc Natl Acad Sci U S A, vol.102, pp.17618-17623, 2005. ,
Selection for chromosome architecture in bacteria, J Mol Evol, vol.62, pp.615-629, 2006. ,
Systematic determination of the mosaic structure of bacterial genomes: species backbone versus strain-specific loops, BMC Bioinformatics, vol.6, p.171, 2005. ,
URL : https://hal.archives-ouvertes.fr/hal-02683426
The recombination hot spot chi is a regulatory element that switches the polarity of DNA degradation by the RecBCD enzyme, Genes Dev, vol.11, pp.571-581, 1997. ,
Biochemistry of homologous recombination in Escherichia coli, Microbiol Rev, vol.58, pp.401-465, 1994. ,
RecBC enzyme nicking at chi sites during DNA unwinding: Location and orientationdependence of the cutting, Cell, vol.41, pp.153-163, 1985. ,
Collapse and repair of replication forks in Escherichia coli, Mol Microbiol, vol.16, pp.373-384, 1995. ,
Comparative and evolutionary analysis of the bacterial homologous recombination systems, PLoS Genet, vol.1, p.15, 2005. ,
URL : https://hal.archives-ouvertes.fr/hal-02683075
Mechanisms of homologous recombination in bacteria, The dynamic bacterial genome, pp.3-32, 2005. ,
Characteristics of Chi distribution on different bacterial genomes, Res Microbiol, vol.150, pp.579-587, 1999. ,
URL : https://hal.archives-ouvertes.fr/hal-02697692
The complete genome sequence of Escherichia coli K-12, Science, vol.277, pp.1453-1474, 1997. ,
Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli, Proc Natl Acad Sci U S A, vol.99, pp.17020-17024, 2002. ,
An efficient statistic to detect over-and underrepresented words in DNA sequences, J Comput Biol, vol.4, pp.189-192, 1997. ,
URL : https://hal.archives-ouvertes.fr/hal-02685031
Skewed oligomers and origins of replication, Gene, vol.217, pp.57-67, 1998. ,
The orientation bias of Chi sequences is a general tendency of G-rich oligomers, Gene, vol.259, pp.207-215, 2000. ,
Replication fork collapse at replication terminator sequences, EMBO J, vol.21, pp.3898-3907, 2002. ,
URL : https://hal.archives-ouvertes.fr/hal-02683441
Understanding the rise of the superbug: Investigation of the evolution and genomic variation of Staphylococcus aureus, Funct Integr Genomics, vol.6, pp.186-201, 2006. ,
A 7-base-pair sequence protects DNA from exonucleolytic degradation in Lactococcus lactis, Proc Natl Acad Sci U S A, vol.92, pp.2244-2248, 1995. ,
URL : https://hal.archives-ouvertes.fr/hal-02710248
Identification of the Chi site of Haemophilus influenzae as several sequences related to the Escherichia coli Chi site, Mol Microbiol, vol.27, pp.1021-1029, 1998. ,
URL : https://hal.archives-ouvertes.fr/hal-02691790
A five-nucleotide sequence protects DNA from exonucleolytic degradation by AddAB, the RecBCD analogue of Bacillus subtilis, Mol Microbiol, vol.29, pp.1369-1377, 1998. ,
URL : https://hal.archives-ouvertes.fr/hal-02684405
Chi sequence protects against RecBCD degradation of DNA in vivo, Proc Natl Acad Sci, vol.89, pp.12073-12077, 1992. ,
Identification and characterization of the dif site from Bacillus subtilis, J Bacteriol, vol.183, pp.1058-1068, 2001. ,
dif, a recA-independent recombination site in the terminus region of the chromosome of Escherichia coli, New Biol, vol.3, pp.799-811, 1991. ,
Searching for patterns in genomic data, Trends Genet, vol.13, pp.497-498, 1997. ,
The unconventional Xer recombination machinery of streptococci/lactococci, PLoS Genet, vol.3, p.17, 2007. ,
URL : https://hal.archives-ouvertes.fr/hal-00180535
Whole genome sequencing of meticillin-resistant Staphylococcus aureus, Lancet, vol.357, pp.1225-1240, 2001. ,
Origin of replication in circular prokaryotic chromosomes, Environ Microbiol, vol.8, pp.353-361, 2006. ,
, DNA, words and models, vol.158, 2005.
Numerical comparison of several approximations of the word count distribution in random sequences, J Comput Biol, vol.8, pp.349-359, 2001. ,
URL : https://hal.archives-ouvertes.fr/hal-02675878
Statistical tests to compare motif count exceptionalities, BMC Bioinformatics, vol.8, p.84, 2007. ,
URL : https://hal.archives-ouvertes.fr/hal-01197521
Comparative analysis of the roles of HtrA-like surface proteases in two virulent Staphylococcus aureus strains, Infect Immun, vol.73, pp.563-572, 2005. ,
URL : https://hal.archives-ouvertes.fr/hal-02683334
High-frequency transformation of Staphylococcus aureus by electroporation, Current Microbiology, vol.21, pp.373-376, 1990. ,
A variant of the staphylococcal chloramphenicol resistance plasmid pC194 with enhanced ability to transform Lactococcus lactis subsp. lactis, Plasmid, vol.31, pp.106-110, 1994. ,
Identification of the lactococcal exonuclease/recombinase and its modulation by the putative Chi sequence, Proc Natl Acad Sci U S A, vol.95, pp.626-631, 1998. ,
URL : https://hal.archives-ouvertes.fr/hal-02689190