Initial sequencing and analysis of the human genome, Nature, vol.409, issue.6822, pp.860-921, 2001. ,
A physical map of the human genome, Nature, vol.409, issue.6822, pp.934-941, 2001. ,
A physical map of the mouse genome, Nature, vol.418, issue.6899, pp.743-750, 2002. ,
An integrated physical and genetic map of the rice genome, Plant Cell, vol.14, issue.3, pp.537-545, 2002. ,
URL : https://hal.archives-ouvertes.fr/hal-02285549
Access to the maize genome: an integrated physical and genetic map, Plant Physiol, vol.128, issue.1, pp.9-12, 2002. ,
Whole-genome validation of high-information-content fingerprinting, Plant Physiol, vol.139, issue.1, pp.27-38, 2005. ,
Every genome sequence needs a good map, Genome Res, vol.19, issue.11, pp.1925-1928, 2009. ,
A strategy of DNA sequencing employing computer programs, Nucleic Acids Res, vol.6, issue.7, pp.2601-2610, 1979. ,
Pairwise end sequencing: a unified approach to genomic mapping and sequencing, Genomics, vol.26, issue.2, pp.345-353, 1995. ,
Whole-genome random sequencing and assembly of Haemophilus influenzae Rd, Science, vol.269, issue.5223, pp.496-512, 1995. ,
The genome sequence of Drosophila melanogaster, Science, vol.287, issue.5461, pp.2185-2195, 2000. ,
Next-generation sequencing: from basic research to diagnostics, Clin Chem, vol.55, issue.4, pp.641-658, 2009. ,
The sequence and de novo assembly of the giant panda genome, Nature, issue.7279, pp.311-317, 2010. ,
Sequencing technologies -the next generation, Nat Rev Genet, vol.2010, issue.1, pp.31-46 ,
Toward a physical map of the genome of the nematode Caenorhabditis elegans, Proc Natl Acad Sci, vol.83, issue.20, pp.7821-7825, 1986. ,
Random-clone strategy for genomic restriction mapping in yeast, Proc Natl Acad Sci, vol.83, issue.20, pp.7826-7830, 1986. ,
Software for genome mapping by fingerprinting techniques, Comput Appl Biosci, vol.4, issue.1, pp.125-132, 1988. ,
Genome mapping by fluorescent fingerprinting, Genome Res, vol.7, issue.12, pp.1162-1168, 1997. ,
High throughput fingerprint analysis of large-insert clones, Genome Res, vol.7, issue.11, pp.1072-1084, 1997. ,
Physical mapping of the rice genome with BACs, Plant Mol Biol, vol.35, issue.1-2, pp.115-127, 1997. ,
Contig assembly of bacterial artificial chromosome clones through multiplexed fluorescence-labeled fingerprinting, Genomics, vol.56, issue.3, pp.237-246, 1999. ,
High-throughput fingerprinting of bacterial artificial chromosomes using the snapshot labeling kit and sizing of restriction fragments by capillary electrophoresis, Genomics, vol.82, issue.3, pp.378-389, 2003. ,
A new strategy for genome sequencing, Nature, vol.381, issue.6581, pp.364-366, 1996. ,
In vitro reconstruction of the Aspergillus (= Emericella) nidulans genome, Proc Natl Acad Sci, vol.94, issue.26, pp.14564-14569, 1997. ,
Sequence-tagged connectors: a sequence approach to mapping and scanning the human genome, Proc Natl Acad Sci, vol.96, issue.17, pp.9739-9744, 1999. ,
Genomic targeting and high-resolution mapping of the domestication gene Q in wheat, Genome, vol.45, issue.4, pp.706-718, 2002. ,
A gene-based high-resolution comparative radiation hybrid map as a framework for genome sequence assembly of a bovine chromosome 6 region associated with QTL for growth, body composition, and milk performance traits, BMC Genomics, vol.7, p.53, 2006. ,
URL : https://hal.archives-ouvertes.fr/hal-02662412
Diploid/polyploid syntenic shuttle mapping and haplotype-specific chromosome walking toward a rust resistance gene (Bru1) in highly polyploid sugarcane (2n approximately 12x approximately 115), Genetics, vol.180, issue.1, pp.649-660, 2008. ,
Construction of a rice bacterial artificial chromosome library and identification of clones linked to the Xa-21 disease resistance locus, Plant J, vol.7, issue.3, pp.525-533, 1995. ,
Chromosome landing: a paradigm for map-based gene cloning in plants with large genomes, Trends Genet, vol.11, issue.2, pp.63-68, 1995. ,
Map-based cloning of leaf rust resistance gene Lr21 from the large and polyploid genome of bread wheat, Genetics, vol.164, issue.2, pp.655-664, 2003. ,
DNA rearrangement in orthologous orp regions of the maize, rice and sorghum genomes, Genetics, vol.170, issue.3, pp.1209-1220, 2005. ,
Physical association of the NB-LRR resistance protein Rx with a Ran GTPase-activating protein is required for extreme resistance to Potato virus X, Plant Cell, vol.19, issue.5, pp.1682-1694, 2007. ,
High potential of a transposon mPing as a marker system in japonica × japonica cross in rice, DNA Res, vol.16, issue.2, pp.131-140, 2009. ,
FPC: a system for building contigs from restriction fingerprinted clones, Comput Appl Biosci, vol.13, issue.5, pp.523-535, 1997. ,
, Contigs built with fingerprints, markers, and FPC V4.7, vol.10, pp.1772-1787, 2000.
Parallel computation of a maximum-likelihood estimator of a physical map, Genetics, vol.157, issue.3, pp.1021-1043, 2001. ,
Information theoretic approach to genome reconstruction, Handbook of computational molecular biology, pp.1-26, 2006. ,
A fast random cost algorithm for physical mapping, Proc Natl Acad Sci, vol.91, issue.23, pp.11094-11098, 1994. ,
Probabilistic assessment of clone overlaps in DNA fingerprint mapping via a priori models, J Comput Biol, vol.12, issue.3, pp.283-297, 2005. ,
Algebraic correction methods for computational assessment of clone overlaps in DNA fingerprint mapping, BMC Bioinformatics, vol.8, p.127, 2007. ,
Statistical analysis of DNA fingerprint data for ordered clone physical mapping of human chromosomes, Bull Math Biol, vol.53, issue.6, pp.853-879, 1991. ,
Construction of physical maps from oligonucleotide fingerprints data, J Comput Biol, vol.6, issue.2, pp.237-252, 1999. ,
Mapping and sequencing complex genomes: let's get physical, Nat Rev Genet, vol.5, issue.8, pp.578-588, 2004. ,
A map for sequence analysis of the Arabidopsis thaliana genome, Nat Genet, vol.22, issue.3, pp.265-270, 1999. ,
Automated ordering of fingerprinted clones, Bioinformatics, vol.20, issue.8, pp.1264-1271, 2004. ,
Beware of mis-assembled genomes, Bioinformatics, vol.21, issue.24, pp.4320-4321, 2005. ,
A physical map of the 1-gigabase bread wheat chromosome 3B, Science, vol.322, issue.5898, pp.101-104, 2008. ,
URL : https://hal.archives-ouvertes.fr/hal-00964135
Interval graphs and maps of DNA, Bull Math Biol, vol.48, issue.2, pp.189-195, 1986. ,
The use of simulated annealing in chromosome reconstruction experiments based on binary scoring, Genetics, vol.132, issue.2, pp.591-601, 1992. ,
An algorithm based on graph theory for the assembly of contigs in physical mapping of DNA, Comput Appl Biosci, vol.10, issue.3, pp.309-317, 1994. ,
Genomic mapping by anchoring random clones: a mathematical analysis, Genomics, vol.11, issue.4, pp.806-827, 1991. ,
Algorithms for clustering data N, J, 1988. ,
Pajek -analysis and visualization of large networks, Graph drawing software. Edited by: Jünger M, Mutzel P, pp.77-103, 2003. ,
, Modern graph theory, 2002.
A genetic algorithm for assembling chromosome physical maps, The Second International Conference on Bioinformatics. Supercomputing and Complex Genomic Analysis, pp.273-285, 1992. ,
Physical mapping of chromosomes: A combinatorial problem in molecular biology, Algorithmica, vol.13, issue.2, pp.52-76, 1995. ,
Constructing large-scale genetic maps using an evolutionary strategy algorithm, Genetics, vol.165, issue.4, pp.2269-2282, 2003. ,
ODS: ordering DNA sequences-a physical mapping algorithm based on simulated annealing, Comput Appl Biosci, vol.9, issue.2, pp.215-219, 1993. ,
Objective criteria for the evaluation of clustering methods, Journal of the American Statistical Association, vol.66, pp.846-850, 1971. ,
An algorithm for drawing general undirected graphs, Information Processing Letters, vol.31, pp.7-15, 1989. ,
Genome physical mapping with large-insert bacterial clones by fingerprint analysis: methodologies, source clone genome coverage, and contig map quality, Genomics, vol.84, issue.6, pp.941-951, 2004. ,
A BAC clone fingerprinting approach to the detection of human genome rearrangements, Genome Biol, vol.8, issue.10, p.224, 2007. ,
Efficacy of clone fingerprinting methodologies, Genomics, vol.89, issue.1, pp.160-165, 2007. ,
Dissecting large and complex genomes: flow sorting and BAC cloning of individual chromosomes from bread wheat, Plant J, vol.39, issue.6, pp.960-968, 2004. ,
Multilocus consensus genetic maps (MCGM): formulation, algorithms, and results, Comput Biol Chem, vol.30, issue.1, pp.12-20, 2006. ,
Methods for genetic analysis in the Triticeae, Genetics and Genomics of the Triticeae, pp.163-199, 2009. ,
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