A. Bergel, D. Féron, and A. Mollica, Catalysis of oxygen reduction in PEM fuel cell by seawater biofilm, Electrochemistry Communications, vol.7, issue.9, pp.900-904, 2005.
DOI : 10.1016/j.elecom.2005.06.006

L. Björnsson, P. Hugenholtz, G. W. Tyson, and L. L. Blackall, Filamentous Chloroflexi (green non-sulfur bacteria) are abundant in wastewater treatment processes with biological nutrient removal c, Microbiology, vol.148, issue.8, pp.2309-2318, 2002.
DOI : 10.1099/00221287-148-8-2309

A. P. Borole, G. Reguera, B. Ringeisen, Z. Wang, Y. Feng et al., Electroactive biofilms: Current status and future research needs, Energy & Environmental Science, vol.80, issue.12, pp.4813-4834, 2011.
DOI : 10.1039/C1EE01753E

S. Carbajosa, M. Malki, R. Caillard, M. F. Lopez, F. J. Palomares et al., Electrochemical growth of Acidithiobacillus ferrooxidans on a graphite electrode for obtaining a biocathode for direct electrocatalytic reduction of oxygen, Biosensors and Bioelectronics, vol.26, issue.2, pp.877-880, 2010.
DOI : 10.1016/j.bios.2010.07.037

B. Cercado, N. Byrne, M. Bertrand, D. Pocaznoi, M. Rimboud et al., Garden compost inoculum leads to microbial bioanodes with potential-independent characteristics, Bioresource Technology, vol.134, pp.276-284, 2013.
DOI : 10.1016/j.biortech.2013.01.123

URL : https://hal.archives-ouvertes.fr/hal-00878185

B. Cercado-quezada, M. Delia, and A. Bergel, Treatment of dairy wastes with a microbial anode formed from garden compost, Journal of Applied Electrochemistry, vol.50, issue.B5, pp.225-232, 2010.
DOI : 10.1007/s10800-009-0001-5

K. Y. Cheng, G. Ho, and R. Cord-ruwisch, Anodophilic Biofilm Catalyzes Cathodic Oxygen Reduction, Environmental Science & Technology, vol.44, issue.1, pp.518-525, 2010.
DOI : 10.1021/es9023833

S. E. Dowd, T. R. Callaway, R. D. Wolcott, Y. Sun, T. Mckeehan et al., Evaluation of the bacterial diversity in the feces of cattle using 16S rDNA bacterial tag-encoded FLX amplicon pyrosequencing (bTEFAP), BMC Microbiology, vol.8, issue.1, 2008.
DOI : 10.1186/1471-2180-8-125

C. Dumas, A. Mollica, D. Féron, R. Basseguy, L. Etcheverry et al., Checking graphite and stainless anodes with an experimental model of marine microbial fuel cell, Bioresource Technology, vol.99, issue.18, pp.8887-8894, 2008.
DOI : 10.1016/j.biortech.2008.04.054

URL : https://hal.archives-ouvertes.fr/hal-00475980

R. C. Edgar, Search and clustering orders of magnitude faster than BLAST, Bioinformatics, vol.26, issue.19, pp.2460-2461, 2010.
DOI : 10.1093/bioinformatics/btq461

R. C. Edgar, B. J. Haas, J. C. Clemente, C. Quince, and R. Knight, UCHIME improves sensitivity and speed of chimera detection, Bioinformatics, vol.27, issue.16, pp.2194-2200, 2011.
DOI : 10.1093/bioinformatics/btr381

B. Erable, D. Féron, and A. Bergel, Microbial Catalysis of the Oxygen Reduction Reaction for Microbial Fuel Cells: A Review, ChemSusChem, vol.102, issue.6, pp.975-987, 2012.
DOI : 10.1002/cssc.201100836

URL : https://hal.archives-ouvertes.fr/hal-00786371

Y. Fan, E. Sharbrough, and H. Liu, Quantification of the Internal Resistance Distribution of Microbial Fuel Cells, Environmental Science & Technology, vol.42, issue.21, pp.8101-8107, 2008.
DOI : 10.1021/es801229j

S. Freguia, K. Rabaey, Z. Yuan, and J. Keller, Sequential anode???cathode configuration improves cathodic oxygen reduction and effluent quality of microbial fuel cells, Water Research, vol.42, issue.6-7, pp.1387-1396, 2008.
DOI : 10.1016/j.watres.2007.10.007

K. Fricke, F. Harnisch, and U. Schröder, On the use of cyclic voltammetry for the study of anodic electron transfer in microbial fuel cells, Energy & Environmental Science, vol.4, issue.1, p.144, 2008.
DOI : 10.1039/b802363h

F. Harnisch and U. Schröder, Selectivity versus Mobility: Separation of Anode and Cathode in Microbial Bioelectrochemical Systems, ChemSusChem, vol.42, issue.10, pp.921-926, 2009.
DOI : 10.1002/cssc.200900111

S. Ishii, T. Shimoyama, Y. Hotta, and K. Watanabe, Characterization of a filamentous biofilm community established in a cellulose-fed microbial fuel cell, BMC Microbiology, vol.8, issue.1, 2008.
DOI : 10.1186/1471-2180-8-6

S. F. Ketep, A. Bergel, A. Calmet, and B. Erable, Stainless steel foam increases the current produced by microbial bioanodes in bioelectrochemical systems, Energy & Environmental Science, vol.134, issue.5, p.1633, 2014.
DOI : 10.1039/c3ee44114h

S. F. Ketep, E. Fourest, and A. Bergel, Experimental and theoretical characterization of microbial bioanodes formed in pulp and paper mill effluent in electrochemically controlled conditions, Bioresource Technology, vol.149, pp.117-125, 2013.
DOI : 10.1016/j.biortech.2013.09.025

URL : https://hal.archives-ouvertes.fr/hal-00877725

W. Li, J. Sun, Y. Hu, Y. Zhang, F. Deng et al., Simultaneous pH self-neutralization and bioelectricity generation in a dual bioelectrode microbial fuel cell under periodic reversion of polarity, Journal of Power Sources, vol.268, pp.287-293, 2014.
DOI : 10.1016/j.jpowsour.2014.06.047

B. E. Logan and J. M. Regan, Electricity-producing bacterial communities in microbial fuel cells, Trends in Microbiology, vol.14, issue.12, pp.512-518, 2006.
DOI : 10.1016/j.tim.2006.10.003

S. Parot, O. Nercessian, M. Delia, W. Achouak, and A. Bergel, Electrochemical checking of aerobic isolates from electrochemically active biofilms formed in compost, Journal of Applied Microbiology, vol.9, issue.4, pp.1350-1359, 2009.
DOI : 10.1111/j.1365-2672.2008.04103.x

C. Pfeffer, S. Larsen, J. Song, M. Dong, F. Besenbacher et al., Filamentous bacteria transport electrons over centimetre distances, Nature, vol.107, issue.7423, pp.218-221, 2012.
DOI : 10.1038/nature11586

D. Pocaznoi, A. Calmet, L. Etcheverry, B. Erable, and A. Bergel, Stainless steel is a promising electrode material for anodes of microbial fuel cells, Energy & Environmental Science, vol.4, issue.11, pp.9645-9652, 2012.
DOI : 10.1039/c2cp42571h

D. Pocaznoi, B. Erable, L. Etcheverry, M. Delia, and A. Bergel, Towards an engineering-oriented strategy for building microbial anodes for microbial fuel cells, Physical Chemistry Chemical Physics, vol.10, issue.38, pp.13332-13343, 2012.
DOI : 10.1039/c2cp42571h

M. Rimboud, D. Pocaznoi, B. Erable, and A. Bergel, Electroanalysis of microbial anodes for bioelectrochemical systems: basics, progress and perspectives, Physical Chemistry Chemical Physics, vol.8, issue.31, pp.16349-16366, 2014.
DOI : 10.1039/C4CP01698J

URL : https://hal.archives-ouvertes.fr/hal-01250378

R. A. Rozendal, H. V. Hamelers, K. Rabaey, J. Keller, and C. J. Buisman, Towards practical implementation of bioelectrochemical wastewater treatment, Trends in Biotechnology, vol.26, issue.8, pp.450-459, 2008.
DOI : 10.1016/j.tibtech.2008.04.008

C. Santoro, S. Babanova, P. Atanassov, B. Li, I. Ieropoulos et al., High Power Generation by a Membraneless Single Chamber Microbial Fuel Cell (SCMFC) Using Enzymatic Bilirubin Oxidase (BOx) Air-Breathing Cathode, Journal of the Electrochemical Society, vol.160, issue.10, pp.720-726, 2013.
DOI : 10.1149/2.058310jes

L. D. Schamphelaire, A. Cabezas, M. Marzorati, M. W. Friedrich, N. Boon et al., Microbial Community Analysis of Anodes from Sediment Microbial Fuel Cells Powered by Rhizodeposits of Living Rice Plants, Applied and Environmental Microbiology, vol.76, issue.6, 2002.
DOI : 10.1128/AEM.02432-09

D. P. Strik, H. V. Hamelers, and C. J. Buisman, Solar Energy Powered Microbial Fuel Cell with a Reversible Bioelectrode, Environmental Science & Technology, vol.44, issue.1, pp.532-537, 2010.
DOI : 10.1021/es902435v

D. P. Strik, . Hamelers, H. V. Bert-), J. F. Snel, and C. J. Buisman, Green electricity production with living plants and bacteria in a fuel cell, International Journal of Energy Research, vol.40, issue.9, pp.870-876, 2008.
DOI : 10.1002/er.1397

C. I. Torres, K. Marcus, A. Rittmann, and B. E. , Proton transport inside the biofilm limits electrical current generation by anode-respiring bacteria, Biotechnology and Bioengineering, vol.41, issue.5, pp.872-881, 2008.
DOI : 10.1016/j.watres.2007.10.036

X. Zhu, M. D. Yates, and B. E. Logan, Set potential regulation reveals additional oxidation peaks of Geobacter sulfurreducens anodic biofilms, Electrochemistry Communications, vol.22, pp.116-119, 2012.
DOI : 10.1016/j.elecom.2012.06.013