R. Pachauri, Climate change 2007: Synthesis report, 2007.

O. Hoegh-guldberg and J. Bruno, The Impact of Climate Change on the World's Marine Ecosystems, Science, vol.328, issue.5985, pp.1523-1528, 2010.
DOI : 10.1126/science.1189930

G. Walther, E. Post, P. Convey, A. Menzel, and C. Parmesan, Ecological responses to recent climate change, Nature, vol.64, issue.2, pp.389-395, 2002.
DOI : 10.1038/416389a

C. Harvell, C. Mitchell, J. Ward, S. Altizer, and A. Dobson, Climate Warming and Disease Risks for Terrestrial and Marine Biota, Science, vol.296, issue.5576, pp.2158-2162, 2002.
DOI : 10.1126/science.1063699

D. Harvell, S. Altizer, I. Cattadori, L. Harrington, and E. Weil, Climate change and wildlife diseases: When does the host matter the most?, Ecology, vol.76, issue.4, pp.912-920, 2009.
DOI : 10.3354/dao069001

J. Ward and K. Lafferty, The Elusive Baseline of Marine Disease: Are Diseases in Ocean Ecosystems Increasing?, PLoS Biology, vol.335, issue.4, p.120, 2004.
DOI : 10.1371/journal.pbio.0020120.t003

C. Harvell, K. Kim, J. Burkholder, R. Colwell, and P. Epstein, Emerging Marine Diseases--Climate Links and Anthropogenic Factors, Science, vol.285, issue.5433, pp.1505-1510, 1999.
DOI : 10.1126/science.285.5433.1505
URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.558.8803

E. Burreson, R. Calvo, and L. , Epizootiology of Perkinsus marinus disease of oysters in Chesapeake Bay, with emphasis on data since 1985, J Shellfish Res, vol.15, pp.17-34, 1996.

T. Cook, M. Folli, J. Klinck, S. Ford, and J. Miller, The Relationship Between Increasing Sea-surface Temperature and the Northward Spread ofPerkinsus marinus(Dermo) Disease Epizootics in Oysters, Estuarine, Coastal and Shelf Science, vol.46, issue.4, pp.587-597, 2004.
DOI : 10.1006/ecss.1997.0283

C. Devaux, Emerging and re-emerging viruses: A global challenge illustrated by Chikungunya virus outbreaks, World Journal of Virology, vol.1, issue.1, pp.11-22, 2012.
DOI : 10.5501/wjv.v1.i1.11

A. Pounds, M. Bustamante, L. Coloma, J. Consuegra, and M. Fogden, Widespread amphibian extinctions from epidemic disease driven by global warming, Nature, vol.49, issue.7073, pp.161-167, 2006.
DOI : 10.1038/nature04246

R. Scheibling and A. Hennigar, Recurrent outbreaks of disease in sea urchins Strongylocentrotus droebachiensis in Nova Scotia:evidence for a link with large-scale meteorologic and oceanographic events, Marine Ecology Progress Series, vol.152, issue.1, pp.155-165, 1997.
DOI : 10.3354/meps152155

L. Skerratt, L. Berger, R. Speare, S. Cashins, and K. Mcdonald, Spread of Chytridiomycosis Has Caused the Rapid Global Decline and Extinction of Frogs, EcoHealth, vol.21, issue.2, pp.125-134, 2007.
DOI : 10.1007/s10393-007-0093-5

A. Campbell, T. Harder, S. Nielsen, S. Kjelleberg, and P. Steinberg, Climate change and disease: bleaching of a chemically defended seaweed, Global Change Biology, vol.150, issue.9, pp.2958-2970, 2011.
DOI : 10.1111/j.1365-2486.2011.02456.x

F. Vargas-albores, P. Hinojosa-baltazar, G. Portillo-clark, and F. Magallon-barajas, Influence of temperature and salinity on the yellowleg shrimp, Penaeus californieinsis Holmes, prophenoloxidase system, Aquaculture Research, vol.108, issue.8, pp.549-553, 1998.
DOI : 10.1016/0300-9629(93)90046-7

R. Case, S. Longford, A. Campbell, A. Low, and N. Tujula, Temperature induced bacterial virulence and bleaching disease in a chemically defended marine macroalga, Environmental Microbiology, vol.49, issue.2, pp.529-537, 2011.
DOI : 10.1111/j.1462-2920.2010.02356.x

A. Decostere, F. Haesebrouck, J. Turnbull, and G. Charlier, Influence of water quality and temperature on adhesion of high and low virulence Flavobacterium columnare strains to isolated gill arches, Journal of Fish Diseases, vol.36, issue.1, pp.1-11, 1999.
DOI : 10.1016/S0378-1135(98)00196-5

A. Kushmaro, E. Rosenberg, M. Fine, and Y. Loya, Bleaching of the coral Oculina patagonica by Vibrio AK-1, Marine Ecology Progress Series, vol.147, pp.159-165, 1997.
DOI : 10.3354/meps147159

S. Ellner, L. Jones, L. Mydlarz, and C. Harvell, : Modeling the Spatial Immunodynamics of a Coral???Pathogen Interaction, The American Naturalist, vol.170, issue.6, pp.143-161, 2007.
DOI : 10.1086/522841

J. Pinzon and T. Lajeunesse, Species delimitation of common reef corals in the genus Pocillopora using nucleotide sequence phylogenies, population genetics and symbiosis ecology, Molecular Ecology, vol.37, issue.2, pp.311-325, 2011.
DOI : 10.1111/j.1365-294X.2010.04939.x

J. Veron, Corals of the World Townsville: Australian Institute of Marine Science, 2000.

Y. Ben-haim and E. Rosenberg, A novel Vibrio sp. pathogen of the coral Pocillopora damicornis, Mar Biol, vol.141, pp.47-55, 2002.

K. Hashimoto, T. Shibuno, E. Murayama-kayano, H. Tanaka, and T. Kayano, Isolation and characterization of stress-responsive genes from the scleractinian coral Pocillopora damicornis, Coral Reefs, vol.23, pp.485-491, 2004.
DOI : 10.1007/s00338-004-0410-1

Y. Loya, K. Sakai, K. Yamazato, Y. Nakano, and R. Sambali, Coral bleaching: the winners and the losers, Ecology Letters, vol.1, issue.2, pp.122-131, 2001.
DOI : 10.1046/j.1461-0248.2001.00203.x

J. Stimson, K. Sakai, and H. Sembali, Interspecific comparison of the symbiotic relationship in corals with high and low rates of bleaching-induced mortality, Coral Reefs, vol.21, issue.4, pp.409-421, 2002.

B. Rozenblat, Y. Rosenberg, and E. , Temperature-Regulated Bleaching and Tissue Lysis of Pocillopora damicornis by the Novel Pathogen Vibrio coralliilyticus, Coral health and disease, pp.301-324, 2004.
DOI : 10.1007/978-3-662-06414-6_17

E. Dinsdale, Abundance of black-band disease on corals from one location on the Great Barrier Reef: a comparison with abundance in the Caribbean region, pp.1239-1243, 2002.

G. Luna, F. Biavasco, and R. Danovaro, Bacteria associated with the rapid tissue necrosis of stony corals, Environmental Microbiology, vol.69, issue.7, pp.1851-1857, 2007.
DOI : 10.1111/j.1462-2920.2007.01287.x

G. Luna, L. Bongiorni, C. Gili, F. Biavasco, and R. Danovaro, Vibrio harveyi as a causative agent of the White Syndrome in tropical stony corals, Environmental Microbiology Reports, vol.362, issue.1, pp.120-127, 2010.
DOI : 10.1111/j.1758-2229.2009.00114.x

F. Pollock, B. Wilson, W. Johnson, P. Morris, and B. Willis, Phylogeny of the coral pathogen Vibrio coralliilyticus, Environmental Microbiology Reports, vol.36, issue.1, pp.172-178, 2010.
DOI : 10.1111/j.1758-2229.2009.00131.x

O. De, E. Santos, N. Alves, J. Dias, G. Mazotto et al., Genomic and proteomic analyses of the coral pathogen Vibrio coralliilyticus reveal a diverse virulence repertoire, ISME J, vol.5, issue.9, pp.1471-1483, 2011.

N. Kimes, C. Grim, W. Johnson, N. Hasan, and B. Tall, Temperature regulation of virulence factors in the pathogen Vibrio coralliilyticus, The ISME Journal, vol.8, issue.4, pp.835-846, 2012.
DOI : 10.1038/ismej.2011.154

J. Vidal-dupiol, O. Ladrière, A. Meistertzheim, L. Fouré, and M. Adjeroud, Physiological responses of the scleractinian coral Pocillopora damicornis to bacterial stress from Vibrio coralliilyticus, Journal of Experimental Biology, vol.214, issue.9, pp.1533-1545, 2011.
DOI : 10.1242/jeb.053165

J. Vidal-dupiol, O. Ladrière, D. Destoumieux-garzon, P. Sautière, and A. Meistertzheim, Innate Immune Responses of a Scleractinian Coral to Vibriosis, Journal of Biological Chemistry, vol.286, issue.25, pp.22688-22698, 2011.
DOI : 10.1074/jbc.M110.216358
URL : https://hal.archives-ouvertes.fr/halsde-00608446

Y. Ben-haim, M. Zicherman-keren, and E. Rosenberg, Temperature-Regulated Bleaching and Lysis of the Coral Pocillopora damicornis by the Novel Pathogen Vibrio coralliilyticus, Applied and Environmental Microbiology, vol.69, issue.7, pp.4236-4242, 2003.
DOI : 10.1128/AEM.69.7.4236-4242.2003

J. Flot and S. Tillier, The mitochondrial genome of Pocillopora (Cnidaria: Scleractinia) contains two variable regions: The putative D-loop and a novel ORF of unknown function, Gene, vol.401, issue.1-2, pp.80-87, 2007.
DOI : 10.1016/j.gene.2007.07.006

P. Marti-puig, Z. Forsman, R. Haverkort-yeh, I. Knapp, and J. Maragos, Extreme phenotypic polymorphism in the coral genus <I>Pocillopora;</I> micro-morphology corresponds to mitochondrial groups, while colony morphology does not, Bulletin of Marine Science, vol.90, issue.1, pp.1-21, 2013.
DOI : 10.5343/bms.2012.1080

J. Pinzon, E. Sampayo, E. Cox, L. Chauka, and C. Chen, , Scleractinia), Journal of Biogeography, vol.37, issue.8, pp.1595-1608, 2013.
DOI : 10.1111/jbi.12110

Y. Ben-haim, F. Thompson, C. Thompson, M. Cnockaert, and B. Hoste, Vibrio coralliilyticus sp. nov., a temperature-dependent pathogen of the coral Pocillopora damicornis, INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, vol.53, issue.1, pp.309-315, 2003.
DOI : 10.1099/ijs.0.02402-0

J. Vidal-dupiol, M. Adjeroud, E. Roger, L. Foure, and D. Duval, Coral bleaching under thermal stress: putative involvement of host/symbiont recognition mechanisms, BMC Physiology, vol.9, issue.1, p.14, 2009.
DOI : 10.1186/1472-6793-9-14
URL : https://hal.archives-ouvertes.fr/halsde-00431331

S. Fox, F. Sergei, and T. Mockler, Applications of ultra-hignt-throughput sequencing, pp.79-108, 2010.

K. Pomraning, K. Smith, E. Bredeweg, P. Phatale, and L. , Paired-end library preparation for rapid genome sequencing. Fungal Secondary Metabolism, 2012.

K. Pomraning, K. Smith, and M. Freitag, Genome-wide high throughput analysis of DNA methylation in eukaryotes, Methods, vol.47, issue.3, pp.142-150, 2009.
DOI : 10.1016/j.ymeth.2008.09.022

J. Vidal-dupiol, D. Zoccola, E. Tambutté, C. Grunau, and C. Cosseau, Genes Related to Ion-Transport and Energy Production Are Upregulated in Response to CO2-Driven pH Decrease in Corals: New Insights from Transcriptome Analysis, PLoS ONE, vol.6, issue.5, p.58652, 2013.
DOI : 10.1371/journal.pone.0058652.s003
URL : https://hal.archives-ouvertes.fr/halsde-00805879

H. Li and R. Durbin, Fast and accurate short read alignment with Burrows-Wheeler transform, Bioinformatics, vol.25, issue.14, pp.1754-1760, 2009.
DOI : 10.1093/bioinformatics/btp324
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2705234

A. Mortazavi, B. Williams, K. Mccue, L. Schaeffer, and B. Wold, Mapping and quantifying mammalian transcriptomes by RNA-Seq, Nature Methods, vol.14, issue.7, pp.621-628, 2008.
DOI : 10.1038/nmeth.1226

L. Wang, Z. Feng, X. Wang, X. Wang, and X. Zhang, DEGseq: an R package for identifying differentially expressed genes from RNA-seq data, Bioinformatics, vol.26, issue.1, pp.136-138, 2010.
DOI : 10.1093/bioinformatics/btp612

N. Bluthgen, K. Brand, B. Cajavec, M. Swat, and H. Herzel, Biological profiling of gene groups utilizing Gene Ontology, 2004.

Q. Le, P. Markovic, J. Hastings, R. Jovine, and D. Morse, Structure and organization of the peridinin-chlorophyll a-binding protein gene in Gonyaulax polyedra, Mol Gen Genet, vol.255, issue.6, pp.595-604, 1997.

D. Lee, M. Mittag, S. Sczekan, D. Morse, and J. Hastings, Molecular cloning and genomic organization of a gene for luciferin-binding protein from the dinoflagellate Gonyaulax polyedra, J Biol Chem, vol.268, issue.12, pp.8842-8850, 1993.

E. Shoguchi, C. Shinzato, T. Kawashima, F. Gyoja, and S. Mungpakdee, Draft Assembly of the Symbiodinium minutum Nuclear Genome Reveals Dinoflagellate Gene Structure, Current Biology, vol.23, issue.15, pp.1399-1408, 2013.
DOI : 10.1016/j.cub.2013.05.062

H. Zhang, Y. Hou, and S. Lin, Isolation and Characterization of Proliferating Cell Nuclear Antigen from the Dinoflagellate Pfiesteria piscicida, The Journal of Eukaryotic Microbiology, vol.39, issue.2, pp.142-150, 2006.
DOI : 10.1111/j.0022-3646.2003.03-055.x

S. Rudd, Expressed sequence tags: alternative or complement to whole genome sequences?, Trends in Plant Science, vol.8, issue.7, pp.321-329, 2003.
DOI : 10.1016/S1360-1385(03)00131-6

E. Rosenberg, O. Koren, L. Reshef, R. Efrony, and I. Zilber-rosenberg, The role of microorganisms in coral health, disease and evolution, Nature Reviews Microbiology, vol.70, issue.5, pp.355-362, 2007.
DOI : 10.1038/nrmicro1635

T. Bosch, R. Augustin, F. Anton-erxleben, S. Fraune, and G. Hemmrich, Uncovering the evolutionary history of innate immunity: The simple metazoan Hydra uses epithelial cells for host defence, Developmental & Comparative Immunology, vol.33, issue.4, pp.559-569, 2009.
DOI : 10.1016/j.dci.2008.10.004

D. Brower, S. Brower, D. Hayward, and E. Ball, Molecular evolution of integrins: Genes encoding integrin ?? subunits from a coral and a sponge, Proceedings of the National Academy of Sciences, vol.94, issue.17, pp.9182-9187, 1997.
DOI : 10.1073/pnas.94.17.9182

M. Hayes, R. Eytan, and M. Hellberg, High amino acid diversity and positive selection at a putative coral immunity gene (tachylectin-2), BMC Evolutionary Biology, vol.10, issue.1, p.150, 2010.
DOI : 10.1186/1471-2148-10-150
URL : http://doi.org/10.1186/1471-2148-10-150

H. Kazumitsu, The effects of lectins on the feeding response in Hydra japonica, Comparative Biochemistry and Physiology Part A: Physiology, vol.76, issue.2, pp.283-287, 1983.
DOI : 10.1016/0300-9629(83)90328-6

B. Knack, A. Iguchi, C. Shinzato, D. Hayward, and E. Ball, Unexpected diversity of cnidarian integrins: expression during coral gastrulation, BMC Evolutionary Biology, vol.8, issue.1, p.136, 2008.
DOI : 10.1186/1471-2148-8-136

E. Kvennefors, W. Leggat, O. Hoegh-guldberg, B. Degnan, and A. Barnes, An ancient and variable mannose-binding lectin from the coral Acropora millepora binds both pathogens and symbionts, Developmental & Comparative Immunology, vol.32, issue.12, pp.1582-1592, 2008.
DOI : 10.1016/j.dci.2008.05.010

D. Miller, G. Hemmrich, E. Ball, D. Hayward, and K. Khalturin, The innate immune repertoire in Cnidaria - ancestral complexity and stochastic gene loss, Genome Biology, vol.8, issue.4, p.59, 2007.
DOI : 10.1186/gb-2007-8-4-r59

J. Schwarz, P. Brokstein, C. Voolstra, A. Terry, and D. Miller, Coral Life History and Symbiosis: functional genomic resources for two reef building Caribbean corals, Acropora palmata and Montastraea faveolata, BMC Genomics, vol.9, issue.1, p.97, 2008.
DOI : 10.1186/1471-2164-9-97

C. Shinzato, E. Shoguchi, T. Kawashima, M. Hamada, and K. Hisata, Using the Acropora digitifera genome to understand coral responses to environmental change, Nature, vol.27, issue.7360, pp.320-323, 2011.
DOI : 10.1038/nature10249

E. Wood-charlson and V. Weis, The diversity of C-type lectins in the genome of a basal metazoan, Nematostella vectensis, Developmental & Comparative Immunology, vol.33, issue.8, pp.881-889, 2009.
DOI : 10.1016/j.dci.2009.01.008

N. Putnam, M. Srivastava, U. Hellsten, B. Dirks, and J. Chapman, Sea Anemone Genome Reveals Ancestral Eumetazoan Gene Repertoire and Genomic Organization, Science, vol.317, issue.5834, pp.86-94, 2007.
DOI : 10.1126/science.1139158

P. Souter, L. Bay, N. Andreakis, N. Csaszar, and F. Seneca, A multilocus, temperature stress-related gene expression profile assay in Acropora millepora, a dominant reef-building coral, Molecular Ecology Resources, vol.23, issue.2, pp.328-334, 2011.
DOI : 10.1111/j.1755-0998.2010.02923.x

L. Dishaw, S. Smith, and C. Bigger, Characterization of a C3-like cDNA in a coral: phylogenetic implications, Immunogenetics, vol.24, issue.7, pp.535-548, 2005.
DOI : 10.1007/s00251-005-0005-1

A. Kimura, E. Sakaguchi, and M. Nonaka, Multi-component complement system of Cnidaria: C3, Bf, and MASP genes expressed in the endodermal tissues of a sea anemone, Nematostella vectensis, Immunobiology, vol.214, issue.3, pp.165-178, 2009.
DOI : 10.1016/j.imbio.2009.01.003

E. Kvennefors, W. Leggat, C. Kerr, T. Ainsworth, and O. Hoegh-guldberg, Analysis of evolutionarily conserved innate immune components in coral links immunity and symbiosis, Developmental & Comparative Immunology, vol.34, issue.11, pp.1219-1229, 2010.
DOI : 10.1016/j.dci.2010.06.016

L. Mydlarz, C. Couch, E. Weil, G. Smith, and C. Harvell, Immune defenses of healthy, bleached and diseased Montastraea faveolata during a natural bleaching event, Diseases of Aquatic Organisms, vol.87, issue.12, pp.67-78, 2009.
DOI : 10.3354/dao02088

L. Mydlarz, S. Holthouse, E. Peters, and C. Harvell, Cellular Responses in Sea Fan Corals: Granular Amoebocytes React to Pathogen and Climate Stressors, PLoS ONE, vol.3, issue.3, p.1811, 2008.
DOI : 10.1371/journal.pone.0001811.g010

L. Mydlarz and C. Palmer, The presence of multiple phenoloxidases in Caribbean reef-building corals, Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology, vol.159, issue.4, pp.372-378, 2011.
DOI : 10.1016/j.cbpa.2011.03.029

C. Palmer, J. Bythell, and B. Willis, Levels of immunity parameters underpin bleaching and disease susceptibility of reef corals, The FASEB Journal, vol.24, issue.6, pp.1935-1946, 2010.
DOI : 10.1096/fj.09-152447

C. Palmer, J. Bythell, and B. Willis, A comparative study of phenoloxidase activity in diseased and bleached colonies of the coral Acropora millepora, Developmental & Comparative Immunology, vol.35, issue.10, pp.1098-1101, 2011.
DOI : 10.1016/j.dci.2011.04.001

C. Palmer, J. Bythell, and B. Willis, Enzyme activity demonstrates multiple pathways of innate immunity in Indo-Pacific anthozoans, Proceedings of the Royal Society B: Biological Sciences, vol.35, issue.10, pp.3879-3887, 1743.
DOI : 10.1016/j.tibs.2010.04.006

C. Palmer, E. Mcginty, D. Cummings, S. Smith, and E. Bartels, Patterns of coral ecological immunology: variation in the responses of Caribbean corals to elevated temperature and a pathogen elicitor, Journal of Experimental Biology, vol.214, issue.24, pp.4240-4249, 2011.
DOI : 10.1242/jeb.061267

C. Palmer, L. Mydlarz, and B. Willis, Evidence of an inflammatory-like response in non-normally pigmented tissues of two scleractinian corals, Proceedings of the Royal Society B: Biological Sciences, vol.95, issue.2, pp.2687-2693, 1652.
DOI : 10.1016/j.jip.2007.01.003

S. Jung, A. Dingley, R. Augustin, F. Anton-erxleben, and M. Stanisak, Hydramacin-1, Structure and Antibacterial Activity of a Protein from the Basal Metazoan Hydra, Journal of Biological Chemistry, vol.284, issue.3, pp.1896-1905, 2009.
DOI : 10.1074/jbc.M804713200

T. Ovchinnikova, S. Balandin, G. Aleshina, A. Tagaev, and Y. Leonova, Aurelin, a novel antimicrobial peptide from jellyfish Aurelia aurita with structural features of defensins and channel-blocking toxins, Biochemical and Biophysical Research Communications, vol.348, issue.2, pp.514-523, 2006.
DOI : 10.1016/j.bbrc.2006.07.078

G. Hemmrich, D. Miller, and T. Bosch, The evolution of immunity: a low-life perspective, Trends in Immunology, vol.28, issue.10, pp.449-454, 2007.
DOI : 10.1016/j.it.2007.08.003

C. Palmer and N. Traylor-knowles, Towards an integrated network of coral immune mechanisms, Proceedings of the Royal Society B: Biological Sciences, vol.4, issue.10, pp.4106-4114, 1745.
DOI : 10.1371/journal.pone.0007298

Y. Weiss, S. Foret, D. Hayward, T. Ainsworth, and R. King, The acute transcriptional response of the coral Acropora millepora to immune challenge: expression of GiMAP/IAN genes links the innate immune responses of corals with those of mammals and plants, BMC Genomics, vol.14, issue.1, p.400, 2013.
DOI : 10.1093/oxfordjournals.molbev.a026201

C. Burge, M. Mouchka, C. Harvell, and S. Roberts, Immune response of the Caribbean sea fan, Gorgonia ventalina, exposed to an Aplanochytrium parasite as revealed by transcriptome sequencing, Frontiers in Physiology, vol.4, pp.1-9, 2013.
DOI : 10.3389/fphys.2013.00180

V. Weis, Cellular mechanisms of Cnidarian bleaching: stress causes the collapse of symbiosis, Journal of Experimental Biology, vol.211, issue.19, pp.3059-3066, 2008.
DOI : 10.1242/jeb.009597

D. Bourne, M. Garren, T. Work, E. Rosenberg, and G. Smith, Microbial disease and the coral holobiont, Trends in Microbiology, vol.17, issue.12, pp.554-562, 2009.
DOI : 10.1016/j.tim.2009.09.004

J. Bruno, E. Selig, K. Casey, C. Page, and B. Willis, Thermal Stress and Coral Cover as Drivers of Coral Disease Outbreaks, PLoS Biology, vol.3, issue.6, p.124, 2007.
DOI : 10.1371/journal.pbio.0050124.t003

M. Lesser, J. Bythell, R. Gates, R. Johnstone, and O. Hoegh-guldberg, Are infectious diseases really killing corals? Alternative interpretations of the experimental and ecological data, Journal of Experimental Marine Biology and Ecology, vol.346, issue.1-2, pp.36-44, 2007.
DOI : 10.1016/j.jembe.2007.02.015

E. Muller and R. Van-woesik, Caribbean coral diseases: primary transmission or secondary infection?, Global Change Biology, vol.4, issue.12, pp.3529-3535, 2012.
DOI : 10.1111/gcb.12019

L. Mydlarz, E. Mcginty, and C. Harvell, What are the physiological and immunological responses of coral to climate warming and disease?, Journal of Experimental Biology, vol.213, issue.6, pp.934-945, 2010.
DOI : 10.1242/jeb.037580

M. Duperthuy, P. Schmitt, E. Garzon, A. Caro, and R. Rosa, Use of OmpU porins for attachment and invasion of Crassostrea gigas immune cells by the oyster pathogen Vibrio splendidus, Proceedings of the National Academy of Sciences, vol.108, issue.7, pp.2993-2998, 2011.
DOI : 10.1073/pnas.1015326108

P. Kaniewska, P. Campbell, D. Kline, M. Rodriguez-lanetty, and D. Miller, Major Cellular and Physiological Impacts of Ocean Acidification on a Reef Building Coral, PLoS ONE, vol.3, issue.4, p.34659, 2012.
DOI : 10.1371/journal.pone.0034659.s005

E. Meyer, G. Aglyamova, and M. Matz, Profiling gene expression responses of coral larvae (Acropora millepora) to elevated temperature and settlement inducers using a novel RNA-Seq procedure, Molecular Ecology, vol.378, issue.17, pp.3599-3616, 2011.
DOI : 10.1111/j.1365-294X.2011.05205.x

A. Moya, L. Huisman, E. Ball, D. Hayward, and L. Grasso, -driven Acidification during the Initiation of Calcification, Molecular Ecology, vol.221, issue.10, pp.2440-2454, 2012.
DOI : 10.1111/j.1365-294X.2012.05554.x
URL : https://hal.archives-ouvertes.fr/hal-00109528

M. Rodriguez-lanetty, S. Harii, and O. Hoegh-guldberg, Early molecular responses of coral larvae to hyperthermal stress, Molecular Ecology, vol.11, issue.24, pp.5101-5114, 2009.
DOI : 10.1111/j.1365-294X.2009.04419.x

X. Zhao, H. Yu, L. Kong, and Q. Li, Transcriptomic Responses to Salinity Stress in the Pacific Oyster Crassostrea gigas, PLoS ONE, vol.7, issue.9, p.46244, 2012.
DOI : 10.1371/journal.pone.0046244.s002

D. Barshis, J. Ladner, T. Oliver, S. Foo, and N. Traylor-knowles, Genomic basis for coral resilience to climate change, Proceedings of the National Academy of Sciences, vol.110, issue.4, pp.1387-1392, 2013.
DOI : 10.1073/pnas.1210224110

A. Gasch, P. Spellman, C. Kao, O. Eisen, and M. , Genomic Expression Programs in the Response of Yeast Cells to Environmental Changes, Molecular Biology of the Cell, vol.11, issue.12, pp.4241-4257, 2000.
DOI : 10.1091/mbc.11.12.4241

J. Warner, The economics of ribosome biosynthesis in yeast, Trends in Biochemical Sciences, vol.24, issue.11, pp.437-440, 1999.
DOI : 10.1016/S0968-0004(99)01460-7

E. Vilaprinyo, R. Alves, and A. Sorribas, Minimization of Biosynthetic Costs in Adaptive Gene Expression Responses of Yeast to Environmental Changes, PLoS Computational Biology, vol.24, issue.2, p.1000674, 2010.
DOI : 10.1371/journal.pcbi.1000674.s011

J. Irazoqui, J. Urbach, and F. Ausubel, Evolution of host innate defence: insights from Caenorhabditis elegans and primitive invertebrates, Nature Reviews Immunology, vol.101, issue.1, pp.47-58, 2010.
DOI : 10.1038/nri2689