F. Azam, OCEANOGRAPHY: Microbial Control of Oceanic Carbon Flux: The Plot Thickens, Science, vol.280, issue.5364, pp.694-696, 1998.
DOI : 10.1126/science.280.5364.694

L. Bernard, C. Courties, P. Servais, M. Troussellier, M. Petit et al., Relationships between bacterial cell-size, productivity and genetic diversity in aquatic environments using cell sorting and flow cytometry, Microb. Ecol, vol.40, pp.148-158, 2000.

J. W. Choi, E. B. Sherr, and B. F. Sherr, Dead or alive? A large fraction of ETS-inactive marine bacterioplankton cells, as assessed by reduction of CTC, can become ETS-active with incubation and substrate addition, Aquatic Microbial Ecology, vol.18, pp.27-35, 1999.
DOI : 10.3354/ame018105

P. A. Del-giorgio and G. Scarborough, Increase in the proportion of metabolically active bacteria along gradients of enrichment in freshwater and marine plankton: implications for estimates of bacterial growth and production rates, Journal of Plankton Research, vol.17, issue.10, pp.1905-1924, 1995.
DOI : 10.1093/plankt/17.10.1905

P. A. Del-giorgio, Y. T. Prairie, and D. F. Bird, Coupling Between Rates of Bacterial Production and the Abundance of Metabolically Active Bacteria in Lakes, Enumerated Using CTC Reduction and Flow Cytometry, Microbial Ecology, vol.34, issue.2, pp.144-154, 1997.
DOI : 10.1007/s002489900044

J. M. Gasol, U. L. Zweifel, F. Peters, J. A. Furhman, and A. ?. Hagström, Significance of size and nucleic acid content heterogeneity as measured by flow cytometry in natural planktonic bacteria, Appl. Environ. Microbiol, vol.65, pp.4475-4483, 1999.

J. M. Gasol and P. A. Giorgio, Using flow cytometry for counting natural planktonic bacteria and understanding the structure of planktonic bacterial communities, Scientia Marina, vol.64, issue.2, pp.197-224, 2000.
DOI : 10.3989/scimar.2000.64n2197

J. P. Gasol, P. A. Del-giorgio, R. Massana, and C. M. Duarte, Active versus inactive bacteria:size-dependence in a coastal marine plankton community, Marine Ecology Progress Series, vol.128, pp.91-97, 1995.
DOI : 10.3354/meps128091

J. F. Jellett, W. K. Li, P. M. Dickie, A. Boraie, and P. E. Keplay, Metabolic activity of bacterioplankton communities assessed by flow cytometry and single carbon substrate utilization, Marine Ecology Progress Series, vol.136, pp.213-225, 1996.
DOI : 10.3354/meps136213

F. Joux and P. Lebaron, Use of fluorescent probes to assess physiological functions of bacteriaat single-cell level, Microbes and Infection, vol.2, issue.12, pp.1523-1535, 2000.
DOI : 10.1016/S1286-4579(00)01307-1

M. Karner and J. A. Fuhrman, Determination of active marine bacterioplankton: a comparison of universal 16S rRNA probes, autoradiography , and nucleoid staining, Appl. Environ. Microbiol, vol.63, pp.1208-1213, 1997.

D. Kirchman, F. K. Nees, and R. Hodson, Leucine incorporation and its potential as a measure of protein synthesis by bacteria in natural aquatic systems, Appl. Environ. Microbiol, vol.49, pp.599-607, 1985.

P. Lebaron, N. Parthuisot, and P. Catala, Comparison of blue nucleic acid dyes for the flow cytometric enumeration of bacteria in aquatic systems, 1998.

P. Lebaron, P. Servais, M. Troussellier, C. Courties, J. Vives-rego et al., changes in bacterial community structure in seawater mesocosms differing in their nutrient status, Changes in bacterial community structure in seawater mesocosms differing in their nutrient status, pp.255-267, 1999.
DOI : 10.3354/ame019255

W. K. Li, J. F. Jelett, and P. M. Dickie, DNA distributions in planktonic bacteria stained with TOTO or TO-PRO, Limnology and Oceanography, vol.40, issue.8, pp.1485-1495, 1995.
DOI : 10.4319/lo.1995.40.8.1485

D. Marie, F. Partenski, S. Jacquet, and D. Vaulot, Enumeration and cell cycle analysis of natural populations of marine picoplankton by flow cytometry using the nucleic acid stain SYBR Green I, Appl. Environ. Microbiol, vol.63, pp.186-193, 1997.

P. Servais, Bacterial production measured by 3 H-thymidine and 3 Hleucine in various aquatic ecosystems, Arch. Hydrobiol. Beih. Ergebn. Limnol, vol.37, pp.73-81, 1992.

P. Servais, C. Courties, P. Lebaron, and M. Troussellier, Coupling Bacterial Activity Measurements with Cell Sorting by Flow Cytometry, Microbial Ecology, vol.38, issue.2, pp.180-189, 1999.
DOI : 10.1007/s002489900160

P. Servais, H. Agogué, C. Courties, F. Joux, and P. Lebaron, Are the actively respiring cells (CTC+) those responsible for bacterial production in aquatic environments?, FEMS Microbiology Ecology, vol.35, issue.2
DOI : 10.1111/j.1574-6941.2001.tb00801.x

URL : https://hal.archives-ouvertes.fr/hal-01102842

B. F. Sherr, P. A. Giorgio, and E. B. Sherr, Estimating abundance and single-cell characteristics of respiring bacteria via the redox dye CTC, Aquatic Microbial Ecology, vol.18, pp.117-131, 1999.
DOI : 10.3354/ame018117

M. E. Sieracki, T. L. Cucci, and J. Nicinski, Flow cytometric analysis of 5-cyano-2,3-ditolyl tetrazolium chloride activity of marine bacterioplankton in dilution cultures, Appl. Environ. Microbiol, vol.65, pp.2409-2417, 1999.

L. H. Stevenson, A case for bacterial dormancy in aquatic systems, Microbial Ecology, vol.47, issue.2, pp.127-133, 1978.
DOI : 10.1007/BF02014283

M. Troussellier, C. Courties, P. Lebaron, and P. Servais, Flow cytometric discrimination of bacterial populations in seawater based on SYTO 13 staining of nucleic acids, FEMS Microbiology Ecology, vol.29, issue.4, pp.319-330, 1999.
DOI : 10.1111/j.1574-6941.1999.tb00623.x

S. Ullrich, H. Karrasch, K. Hoppe, M. Jeskulke, and . Mehrens, Toxic effects on bacterial metabolism of the redox dye 5-cyano-2,3-ditolyltet- razolium chloride, Appl. Environ. Microbiol, vol.62, pp.4587-4593, 1996.

S. Ullrich, B. Karrash, and H. G. Hoppe, Is the CTC dye technique an adequate approach for estimating active bacterial cells?, Aquatic Microbial Ecology, vol.17, pp.207-209, 1999.
DOI : 10.3354/ame017207

J. Vives-rego, P. Lebaron, and G. Nebe-von-caron, Current and future applications of flow cytometry in aquatic microbiology, FEMS Microbiology Reviews, vol.24, issue.4, pp.429-448, 2000.
DOI : 10.1111/j.1574-6976.2000.tb00549.x

U. L. Zweifel and A. ?. Hagström, Total counts of marine bacteria include a large fraction of non-nucleoid-containing bacteria (ghosts), Appl. Environ. Microbiol, vol.61, pp.2180-2185, 1995.