Bacterial 754 dynamics in a microphytobenthic biofilm: a tidal mesocosm approach, Journal of Sea Research, p.755 ,
Interstitial dissolved organic carbon (DOC) concentrations within sinking marine aggregates and their potential contribution to carbon flux, Limnology and Oceanography, vol.45, issue.6, pp.1245-757, 2000. ,
DOI : 10.4319/lo.2000.45.6.1245
Characteristics, dynamics and significance of marine snow, Progress in Oceanography, vol.20, issue.1, pp.41-82, 1988. ,
DOI : 10.1016/0079-6611(88)90053-5
Phytoplankton growth rates in a light-limited environment, Bay Marine Ecology Progress Series, vol.761, issue.44, pp.167-173, 1988. ,
763 Looking for general trends in trophic interactions among estuarine micro-and mesozooplankton, Journal of Plankton Research, vol.29, pp.764-135, 2007. ,
Energy flow of a boreal intertidal ecosystem, the Sylt-Rømø 766, 2004. ,
Trophic dynamics of eight intertidal communities of the Sylt, p.768, 2007. ,
Assessment of spatial and temporal variability in 770 ecosystem properties of the St Marks National Wildlife Refuge, Estuarine, 771 Coastal and Shelf Science, pp.329-349, 1998. ,
The Comparative Ecology of Six Marine Ecosystems, Philosophical Transactions of the Royal Society B: Biological Sciences, vol.333, issue.1266, pp.15-29, 1991. ,
DOI : 10.1098/rstb.1991.0058
Sediment transport over an intertidal mudflat: field investigations and estimation of fluxes within the ???Baie de Marenngres-Oleron??? (France), Continental Shelf Research, pp.776-1635, 2000. ,
DOI : 10.1016/S0278-4343(00)00041-8
Low consumption of virus-sized 778 particles by heterotrophic nanoflagellates in two lakes of the French Massif Central, Aquatic 779 Microbial Ecology, pp.205-209, 2005. ,
Analyse conceptuelle du système de production primaire microphytobenthique 783 des vasières intertidales, Océanis, vol.32, pp.215-235, 2006. ,
Dynamic behaviour of benthic microalgal biomass in intertidal mudflats, Journal of Experimental Marine Biology and Ecology, vol.264, issue.1, pp.85-100, 2001. ,
DOI : 10.1016/S0022-0981(01)00312-4
Properties of the dynamics of intertidal microphytobenthic biomass, Journal of the Marine Biological Association of the UK, vol.82, issue.6, pp.1027-1028, 2002. ,
DOI : 10.1017/S0025315402006574
Towards a sustainable use of water resources: a whole-ecosystem approach using network analysis, International Journal of Environment and Pollution, vol.18, issue.5, pp.463-485, 2002. ,
DOI : 10.1504/IJEP.2002.002340
Sedimentation, carbon export and food web 793 structure in the Mississippi River plume described by inverse analysis, Marine Ecology Progress Series, vol.794, pp.278-313, 2004. ,
), Journal of the Fisheries Research Board of Canada, vol.22, issue.6, pp.1491-1501, 1965. ,
DOI : 10.1139/f65-128
Does microphytobenthos resuspension influence phytoplankton in shallow systems? A comparison through a Fourier series analysis, Estuarine, Coastal and Shelf Science, vol.110, pp.77-84, 2012. ,
DOI : 10.1016/j.ecss.2012.03.028
Food and feeding in grey mullets Aquaculture of grey mullets, p.802, 1981. ,
In situ measurement of the settling velocity of organic carbon particles and 10 species of phytoplankton, Limnology and Oceanography, vol.25, issue.5, pp.855-864, 1980. ,
DOI : 10.4319/lo.1980.25.5.0855
Monthly HPLC measurements of pigment concentration from an intertidal muddy sediment of Marennes-Ol??ron Bay, France, Marine Ecology Progress Series, vol.121, issue.807, pp.171-179, 1995. ,
DOI : 10.3354/meps121171
in an intertidal mudflat: evidence of the importance of the primary production (biofilm) for 810 the species, Journal of Sea Research, p.811 ,
Physiological versus 812 behavioral photoprotection in intertidal epipelic and epipsammic benthic diatom communities, Journal of Experimental Marine Biology and Ecology, vol.405, pp.127-137, 2011. ,
Behavioral responses of 815 juvenile Liza aurata to changes in coastal temperatures and consequences for benthic food 816 resources, Journal of Sea Research, p.817 ,
THE UPS AND DOWNS OF LIFE IN A BENTHIC BIOFILM: MIGRATION OF BENTHIC DIATOMS, Diatom Research, vol.39, issue.2, pp.181-202, 2004. ,
DOI : 10.1080/0269249X.2004.9705870
Intense winter heterotrophic production stimulated by benthic resuspension, Limnology and Oceanography, vol.45, issue.7, pp.1672-1676, 2000. ,
DOI : 10.4319/lo.2000.45.7.1672
The paradox high zooplankton biomass???low vegetal particulate organic matter in high turbidity zones: What way for energy transfer?, Journal of Experimental Marine Biology and Ecology, vol.333, issue.2, pp.202-218, 2006. ,
DOI : 10.1016/j.jembe.2005.12.045
URL : https://hal.archives-ouvertes.fr/hal-00132627
Contribution of resuspended microphytobenthos to total 825 phytoplankton in the EMS estuary and its possible role for grazers, Netherlands Journal of Sea Research, vol.826, issue.30, pp.91-105, 1992. ,
Factors influencing the sinking of POC and the efficiency of the biological carbon pump, Deep Sea Research Part II: Topical Studies in Oceanography, vol.54, issue.5-7, pp.639-658, 2007. ,
DOI : 10.1016/j.dsr2.2007.01.004
URL : https://hal.archives-ouvertes.fr/hal-00660809
Microbial biofilms in intertidal systems: an overview, Continental Shelf Research, vol.20, issue.10-11, pp.1257-1273, 2000. ,
DOI : 10.1016/S0278-4343(00)00022-4
Comparative analysis of the food 833 webs of two intertidal mudflats during two seasons using inverse modelling: Aiguillon Cove and 834, 2006. ,
Short-term variability of intertidal microphytobenthic production using an oxygen microprofiling system, Marine and Freshwater Research, vol.60, issue.7, pp.712-726, 2009. ,
DOI : 10.1071/MF08070
URL : https://hal.archives-ouvertes.fr/hal-00480470
Orvain, 840 F., present issue. Sequential resuspension of components (virus, prokaryotes and protists) of biofilm 841 by erodimetry experiments in the Brouage mudflat (French Atlantic coast): subsurface vertical 842 distribution of microorganisms into the sediment, Journal of Sea Research, p.843 ,
Measures of ecosystem structure and function derived from analysis of flows, Journal of Theoretical Biology, vol.56, issue.2, pp.363-380, 1976. ,
DOI : 10.1016/S0022-5193(76)80080-X
Influence of method on the apparent size distribution of bacterioplankton cells, p.846, 1981. ,
Acid extraction of tritium label from bacterial DNA in clay sediment, Journal of Microbiological Methods, vol.25, issue.1, pp.1-4, 1996. ,
DOI : 10.1016/0167-7012(95)00071-2
Effects of Experimental Sediment Resuspension on a Coastal Planktonic Microbial Food Web, Estuarine, Coastal and Shelf Science, vol.55, issue.5, pp.751-762, 2002. ,
DOI : 10.1006/ecss.2001.0937
Short-and long-term sedimentation on 853, 2000. ,
Dynamic model of the short- 856 term variability of microphytobenthic biomass on temperate intertidal mudflats, Marine Ecology 857 Progress Series, pp.291-303, 2000. ,
Dynamics of spatial patterns of microphytobenthic biomass: Inferences from a 860 geostatistical analysis of two comprehensive surveys in Marennes-Oleron Bay (France), pp.131-141, 1998. ,
863 Microorganism dynamics during a rising tide: Disentangling effects of resuspension and mixing with 864 offshore waters above an intertidal mudflat, Journal of Marine Systems, p.865, 2013. ,
Accounting for Rough Bed Friction Factors of 866, 2012. ,
Dynamics of extracellular polymeric substance (EPS) production and loss in an 870 estuarine, diatom-dominated, microalgal biofilm over a tidal emersion-immersion period, Limnology, vol.871, issue.51, pp.79-93, 2006. ,
Ingestion rate of the deposit-feeder Hydrobia ulvae (Gastropoda) on epipelic diatoms: effect of cell size and algal biomass, Journal of Experimental Marine Biology and Ecology, vol.317, issue.1, pp.1-12, 2005. ,
DOI : 10.1016/j.jembe.2004.11.009
URL : https://hal.archives-ouvertes.fr/hal-00091281
Energy metabolism as related to body size and respiratory surfaces, and its 876 evolution, Reports of the Steno Memorial Hospital and Nordinsk Insulin Laboratorium, vol.9, pp.6-110, 1960. ,
Microstructure of microphytobenthic biofilm and its 878 spatio-temporal dynamics in an intertidal mudflat, Marine Ecology Progress 879 Series, pp.33-44, 2004. ,
Benthic community structure and sediment processes on an intertidal flat: results from the ECOFLAT project, Continental Shelf Research, vol.21, issue.18-19, pp.2055-2071, 2001. ,
DOI : 10.1016/S0278-4343(01)00042-5
The effects of aggregation 884 on the performance of the inverse method and indicators of network analysis, Ecological Modelling, vol.885, issue.220, pp.3448-3464, 2009. ,
The intraspecific scaling of metabolic rate with body mass in fishes depends on lifestyle and temperature, Ecology Letters, vol.35, issue.2, pp.184-193, 2010. ,
DOI : 10.1111/j.1461-0248.2009.01415.x
Tidal resuspension of microphytobenthic chlorophyll a in a Nanaura mudflat, Saga, Ariake Sea, Japan: flood??ebb and spring??neap variations, Marine Ecology Progress Series, vol.312, pp.85-100, 2006. ,
DOI : 10.3354/meps312085
Flume studies of the transport of sediment in estuarine shaoling processes, p.894, 1962. ,
The role of phosphorus on planktonic, p.895, 2002. ,
Role of free-living and particle- 897 attached bacteria in the recycling and export of organic material in the Hudson bay system, Journal 898 of Marine Systems, pp.434-445, 2011. ,
Characterization of intertidal flat hydrodynamics, Continental Shelf Research, vol.20, issue.12-13, pp.1433-1459, 2000. ,
DOI : 10.1016/S0278-4343(00)00031-5
Modeling the impact of oyster culture on a mudflat food web in Marennes-Ol??ron Bay (France), Marine Ecology Progress Series, vol.273, pp.147-161, 2004. ,
DOI : 10.3354/meps273147
Fragile dominion: complexity and the commons. Reading, MA:Perseus Books, p.904, 1999. ,
Meta-ecosystems: a theoretical framework for a spatial ecosystem ecology, Ecology Letters, vol.78, issue.8, pp.673-679, 2003. ,
DOI : 10.1046/j.1523-1739.1997.96210.x
Microphytobenthos: The Ecological Role of the "Secret Garden" of Unvegetated, Shallow-Water Marine Habitats. I. Distribution, Abundance and Primary Production, Estuaries, vol.19, issue.2, pp.186-201, 1996. ,
DOI : 10.2307/1352224
Viral abundance 910 and distribution in mesopelagic and bathypelagic waters of the Mediterranean Sea. Deep-Sea 911 Research Part I: Oceanographic Research Papers, pp.1209-1220, 2007. ,
Resuspension 913 of benthic prokaryotic communities during physical erosion process: an experimental approach, Journal of Sea Research, pp.914-915 ,
Effect of heterotrophic nanoflagellates on the loss of virus-like particles in pond water, Ecological Research, vol.43, issue.4, pp.473-479, 2002. ,
DOI : 10.1128/MMBR.64.1.69-114.2000
Energy Transformations by a Population of Fish in the River Thames, The Journal of Animal Ecology, vol.34, issue.2, pp.253-275, 1965. ,
DOI : 10.2307/2650
Weak trophic interactions and the balance of nature, Nature, vol.920, issue.395, pp.794-798, 1998. ,
Benthic response to sedimentation events during autumn to spring at a shallow water station in the Western Kiel Bight, Marine Biology, vol.36, issue.3, pp.247-256, 1983. ,
DOI : 10.1007/BF00395813
924 Annual budget of benthic production in Mont Saint-Michel Bay considering cloudiness, 925 microphytobenthos migration, and variability of respiration rates with tidal conditions, Continental 926 Shelf Research, pp.2280-2285, 2009. ,
In situ measurements of benthic primary production during emersion: seasonal variations and annual production in the Bay of Somme (eastern English Channel, France), Continental Shelf Research, vol.24, issue.13-14, pp.1437-1449, 2004. ,
DOI : 10.1016/j.csr.2004.06.002
General allometric equations for rates of nutrient uptake, ingestion, and respiration in plankton organisms, Limnology and Oceanography, vol.34, issue.7, pp.1290-1299, 1989. ,
DOI : 10.4319/lo.1989.34.7.1290
Comparative ecosystem trophic structure of three U.S. mid-Atlantic estuaries, Marine Ecology Progress Series, vol.161, pp.239-254, 1997. ,
DOI : 10.3354/meps161239
Microbial 935 interactions in marine water amended by eroded benthic biofilm: A case study from an intertidal 936 mudflat Original Research Article, Journal of Sea Research, p.937 ,
Dissolved inorganic nitrogen uptake by intertidal microphytobenthos: nutrient concentrations, light availability and migration, Marine Ecology Progress Series, vol.379, pp.33-44, 2009. ,
DOI : 10.3354/meps07852
URL : https://hal.archives-ouvertes.fr/hal-00455611
The effect of physical drivers on ecosystem indices derived from ecological network analysis: Comparison across estuarine ecosystems, Estuarine, Coastal and Shelf Science, vol.108, issue.943, pp.132-143 ,
DOI : 10.1016/j.ecss.2011.12.031
URL : https://hal.archives-ouvertes.fr/hal-01242221
Use of SYBR Green I for rapid epifluorescence counts of marine viruses and bacteria, Aquatic Microbial Ecology, vol.14, pp.113-118, 1998. ,
DOI : 10.3354/ame014113
Relevance of biofilm features 947 to understand the dynamic behavior of sediment erodability and microphytobenthos resuspension, Journal of Sea Research, p.948 ,
Interacting effects of Hydrobia ulvae 950 bioturbation and microphytobenthos on the erodibility of mudflat sediments, Marine Ecology 951 Progress Series, pp.205-223, 2004. ,
In situ structuring of virioplankton through ??bacterial exoenzymatic activity: interaction with phytoplankton, situ structuring of virioplankton through 953 bacterial exoenzymatic activity: Interaction with phytoplankton, pp.233-954, 2011. ,
DOI : 10.3354/ame01524
URL : https://hal.archives-ouvertes.fr/hal-01095578
Influence of environment factors on bacterial ingestion rate of the deposit-feeder Hydrobia ulvae and comparison with meiofauna, Journal of Sea Research, vol.60, issue.3, pp.151-156, 2008. ,
DOI : 10.1016/j.seares.2008.05.003
URL : https://hal.archives-ouvertes.fr/hal-01248039
Seasonal variation in 959 consumption of benthic bacteria by meio-And macrofauna in an intertidal mudflat, Limnology and 960 Oceanography, pp.1048-1059, 2009. ,
Bacterivory of a mudflat nematode community under different environmental conditions, Marine Biology, vol.5, issue.4, pp.671-682, 2008. ,
DOI : 10.1007/s00227-008-0960-9
URL : https://hal.archives-ouvertes.fr/hal-00293542
Ascendency as an ecological indicator: a case study of estuarine pulse eutrophication, Estuarine, Coastal and Shelf Science, vol.60, issue.1, pp.23-35, 2004. ,
DOI : 10.1016/j.ecss.2003.11.017
Tidal impact on planktonic primary and bacterial production in the German Wadden Sea, Helgoland Marine Research, vol.53, issue.1, pp.19-27, 1999. ,
DOI : 10.1007/PL00012133
Effect of tidal resuspension on benthic???pelagic coupling in an experimental ecosystem study, Marine Ecology Progress Series, vol.413, issue.34, pp.33-53, 1989. ,
DOI : 10.3354/meps08709
An ecosystem box model for estimating the carrying capacity of a macrotidal shellfish system, Marine Ecology Progress Series, vol.115, pp.117-130, 1994. ,
DOI : 10.3354/meps115117
Isotopic Determination of Food Sources ofCrassostrea gigasAlong a Trophic Gradient in the Estuarine Bay of Marennes-Ol ??ron, Estuarine, Coastal and Shelf Science, vol.42, issue.3, pp.347-360, 1996. ,
DOI : 10.1006/ecss.1996.0023
Relationships between the cell volume and the carbon content of bacteria, Oceanology, vol.50, issue.4, pp.522-530, 2010. ,
DOI : 10.1134/S0001437010040089
Structural asymmetry and the stability of diverse food webs, Nature, vol.413, issue.7100, pp.265-269, 2006. ,
DOI : 10.1038/nature04887
Persistent, vertical-migration rhythms in benthic microflora, British Phycological Bulletin, vol.46, issue.6, p.985, 1966. ,
DOI : 10.1017/S0025315400016428
Key Features of Intertidal Food Webs That 989 Support Migratory Shorebirds, PLoS ONE, vol.8, pp.76739-990, 2013. ,
Factors controlling Bacterial Production in Marine and Freshwater 991 Sediments, Microbial Ecology, vol.26, pp.79-99, 1993. ,
Contribution of benthic microalgae to the whole water algal biomass and primary production in Suo Nada, the Seto Inland Sea, Japan, Journal of Oceanography, vol.57, issue.3, pp.311-323, 2009. ,
DOI : 10.1007/s10872-009-0029-5
Stable isotope evidence of benthic microalgae-based growth and 996 secondary production in the suspension feeder Cerastoderma edule (Mollusca, Bivalvia) in the 997, 2000. ,
Importance of microzooplanktonic crustaceans in the coastal food chain: Bay of Marennes-Ol??ron, France, Oceanologica Acta, vol.21, issue.1, pp.105-112, 1998. ,
DOI : 10.1016/S0399-1784(98)80054-6
A comparison of selected ecosystem attributes of three South African estuaries with different freshwater inflow regimes, using network analysis, Journal of Marine Systems, vol.56, issue.3-4, pp.283-308, 1002. ,
DOI : 10.1016/j.jmarsys.2004.12.003
Cross-phyletic patterns of particle selection by deposit feeders, Journal of Marine Research, vol.46, issue.1, pp.119-143, 1004. ,
DOI : 10.1357/002224088785113685
Modelling the primary productivity of intertidal microphytobenthos:time scales of variability and effects of migratory rhythms, Marine Ecology Progress Series, vol.192, issue.30, pp.13-1007, 1008. ,
DOI : 10.3354/meps192013
Moving from pattern to process: coexistence mechanisms under intermediate disturbance regimes, Ecology Letters, vol.83, issue.6, pp.491-508, 2004. ,
DOI : 10.1046/j.1365-2699.2001.00559.x
1, Limnology and Oceanography, vol.30, issue.3, pp.598-606, 1985. ,
DOI : 10.4319/lo.1985.30.3.0598
URL : https://hal.archives-ouvertes.fr/in2p3-00420307
Resilience of Pelagic and Benthic Microbial Communities to Sediment Resuspension in a Coastal Ecosystem, Knebel Vig, Denmark, Estuarine, Coastal and Shelf Science, vol.42, issue.4, pp.405-415, 1014. ,
DOI : 10.1006/ecss.1996.0027
Gross Growth Efficiencies of Protozoan and Metazoan Zooplankton and Their 1016 Dependence on Food Concentration, Predator-Prey Weight Ratio, and Taxonomic Group, Limnology 1017 and oceanography 42, pp.1375-1385, 1997. ,
Preliminary estimate of primary production by phytoplankton in 1019, 2006. ,
Viruses in the sea, Nature, vol.155, issue.7057, pp.356-361, 2005. ,
DOI : 10.1006/viro.2001.1028
Optimal foraging by deposit-feeding invertebrates: Roles of particle size and organic coating, Oecologia, vol.62, issue.3, pp.295-304, 1982. ,
DOI : 10.1007/BF00367951
Small-scale temporal and spatial variability in the erosion threshold and properties of cohesive intertidal sediments, Continental Shelf Research, vol.26, issue.3, pp.351-362, 1025. ,
DOI : 10.1016/j.csr.2005.11.007
Zooplankton fecal pellets, marine snow and sinking phytoplankton blooms, Aquatic Microbial Ecology, vol.27, pp.57-102, 1027. ,
DOI : 10.3354/ame027057
Growth and Development. Ecosystems Phenomenology, 1029. ,
Some steps toward a central theory of ecosystem dynamics, Computational Biology and Chemistry, vol.27, issue.6, pp.523-530, 1030. ,
DOI : 10.1016/S1476-9271(03)00050-1
Quantitative methods for ecological network analysis, Computational Biology and Chemistry, vol.28, issue.5-6, pp.321-339, 1032. ,
DOI : 10.1016/j.compbiolchem.2004.09.001
Quantifying sustainability: Resilience, efficiency and the return of information theory, Ecological Complexity, vol.6, issue.1, pp.27-36, 2009. ,
DOI : 10.1016/j.ecocom.2008.10.005
Symmetrical overhead in flow networks, International Journal of Systems Science, vol.21, issue.2, pp.429-437, 1990. ,
DOI : 10.1080/00207729008910372
The importance of extracellular carbohydrate production 1038 by marine epipelic diatoms xsample(): An R Function for Sampling 1040 Linear Inverse Problems The trophic significance of bacterial 1042 carbon in a marine intertidal sediments: Results of an in situ stable isotope labeling study Quantifying food web flows using linear inverse models, Limnology 1043 & Oceanography, pp.183-240, 1045. ,
Construction of flow networks using inverse methods, 1047. ,
Network Analysis in Marine Ecology, pp.62-81 ,
An Inverse Model Analysis of Planktonic Food Webs in Experimental Lakes, Canadian Journal of Fisheries and Aquatic Sciences, vol.51, issue.9, pp.2034-2044, 1994. ,
DOI : 10.1139/f94-206
Food web dynamics in the ocean. I. Best-estimates of flow networks using inverse methods, Marine Ecology Progress Series, vol.42, pp.269-287, 1988. ,
DOI : 10.3354/meps042269
Contribution of ciliated microprotozoans and dinoflagellates to the 1053 diet of three copepod species in the bay of Biscay, Hydrobiologia, vol.443, issue.1/3, pp.193-204, 2001. ,
DOI : 10.1023/A:1017502813154
Intertidal bare 1055 mudflats subsidize subtidal production through outwelling of benthic microalgae, Estuarine, Coastal 1056 and Shelf Science, pp.138-143, 2012. ,