Deciphering the splicing code, Nature, vol.27, issue.7294, pp.53-59, 2010. ,
DOI : 10.1038/nature09000
The Evolutionary Landscape of Alternative Splicing in Vertebrate Species, Science, vol.338, issue.6114, pp.1587-1593, 2012. ,
DOI : 10.1126/science.1230612
Global regulation of alternative splicing during myogenic differentiation, Nucleic Acids Research, vol.38, issue.21, pp.7651-7664, 2010. ,
DOI : 10.1093/nar/gkq614
Canadian Society of Molecular Biosciences (CSMB) Senior Investigator Award, Biochemistry and Cell Biology, vol.90, issue.5, pp.603-612, 2012. ,
DOI : 10.1139/o2012-019
Splicing factor and exon profiling across human tissues, Nucleic Acids Research, vol.38, issue.9, pp.2825-2838, 2010. ,
DOI : 10.1093/nar/gkq008
Splicing program of human MENA produces a previously undescribed isoform associated with invasive, mesenchymal-like breast tumors, Proceedings of the National Academy of Sciences, vol.109, issue.47, pp.19280-19285, 2012. ,
DOI : 10.1073/pnas.1214394109
Genome-Wide Determination of a Broad ESRP-Regulated Posttranscriptional Network by High-Throughput Sequencing, Molecular and Cellular Biology, vol.32, issue.8, pp.1468-1482, 2012. ,
DOI : 10.1128/MCB.06536-11
Ensembl 2013, Nucleic Acids Research, vol.41, issue.D1, pp.48-55, 2013. ,
DOI : 10.1093/nar/gks1236
URL : http://doi.org/10.1093/nar/gks1236
Overlapping splicing regulatory motifs--combinatorial effects on splicing, Nucleic Acids Research, vol.38, issue.10, pp.3318-3327, 2010. ,
DOI : 10.1093/nar/gkq005
Identification of Evolutionarily Conserved Exons as Regulated Targets for the Splicing Activator Tra2?? in Development, PLoS Genetics, vol.39, issue.12, p.1002390, 2011. ,
DOI : 10.1371/journal.pgen.1002390.s007
URL : https://hal.archives-ouvertes.fr/inserm-00711527
PatSearch: a program for the detection of patterns and structural motifs in nucleotide sequences, Nucleic Acids Research, vol.31, issue.13, pp.3608-3612, 2003. ,
DOI : 10.1093/nar/gkg548
Alternative splicing: global insights, FEBS Journal, vol.48, issue.4, pp.856-866, 2010. ,
DOI : 10.1111/j.1742-4658.2009.07521.x
Decrypting the genome's alternative messages, Current Opinion in Cell Biology, vol.21, issue.3, pp.377-386, 2009. ,
DOI : 10.1016/j.ceb.2009.02.006
Distinct regulatory programs establish widespread sex-specific alternative splicing in Drosophila melanogaster, RNA, vol.17, issue.3, pp.453-468, 2011. ,
DOI : 10.1261/rna.2460411
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources, Nature Protocols, vol.99, issue.1, pp.44-57, 2009. ,
DOI : 10.1038/nprot.2008.211
Integrative Genome-wide Analysis Reveals Cooperative Regulation of Alternative Splicing by hnRNP Proteins, Cell Reports, vol.1, issue.2, pp.167-178, 2012. ,
DOI : 10.1016/j.celrep.2012.02.001
Diverse roles of hnRNP L in mammalian mRNA processing: A combined microarray and RNAi analysis, RNA, vol.14, issue.2, pp.284-296, 2008. ,
DOI : 10.1261/rna.725208
Human MicroRNA Targets, PLoS Biology, vol.31, issue.11, p.363, 2004. ,
DOI : 10.1371/journal.pbio.0020363.st013
URL : http://doi.org/10.1371/journal.pbio.0020363
Functional consequences of developmentally regulated alternative splicing, Nature Reviews Genetics, vol.234, issue.10, pp.715-729, 2011. ,
DOI : 10.1038/nrg3052
Analysis and design of RNA sequencing experiments for identifying isoform regulation, Nature Methods, vol.90, issue.12, pp.1009-1015, 2010. ,
DOI : 10.1038/nmeth.1528
Function of alternative splicing, Gene, vol.514, issue.1, pp.1-30, 2013. ,
DOI : 10.1016/j.gene.2012.07.083
The role of site accessibility in microRNA target recognition, Nature Genetics, vol.26, issue.10, pp.1278-1284, 2007. ,
DOI : 10.1038/ng2135
Alternative splicing and disease, RNA Biology, vol.5, issue.1, pp.17-19, 2008. ,
DOI : 10.4161/rna.5.1.5944
Divergent roles of ALS-linked proteins FUS/TLS and TDP-43 intersect in processing long pre-mRNAs, Nature Neuroscience, vol.156, issue.11, pp.1488-1497, 2012. ,
DOI : 10.1080/146608200300079536
Transcriptome-wide Analysis of Regulatory Interactions of the RNA-Binding Protein HuR, Molecular Cell, vol.43, issue.3, pp.340-352, 2011. ,
DOI : 10.1016/j.molcel.2011.06.008
Conserved Seed Pairing, Often Flanked by Adenosines, Indicates that Thousands of Human Genes are MicroRNA Targets, Cell, vol.120, issue.1, pp.15-20, 2005. ,
DOI : 10.1016/j.cell.2004.12.035
Decoding muscle alternative splicing, Current Opinion in Genetics & Development, vol.21, issue.4, pp.380-387, 2011. ,
DOI : 10.1016/j.gde.2011.03.006
Position-dependent alternative splicing activity revealed by global profiling of alternative splicing events regulated by PTB, Nature Structural & Molecular Biology, vol.19, issue.99, pp.1114-1123, 2010. ,
DOI : 10.1101/gr.6818908
A global map of human gene expression, Nature Biotechnology, vol.40, issue.4, pp.322-324, 2010. ,
DOI : 10.1016/j.ydbio.2006.01.023
RNA-binding proteins implicated in the hypoxic response, Journal of Cellular and Molecular Medicine, vol.8, issue.9a, pp.2759-2769, 2009. ,
DOI : 10.1111/j.1582-4934.2009.00842.x
Evolutionary Dynamics of Gene and Isoform Regulation in Mammalian Tissues, Science, vol.338, issue.6114, pp.1593-1599, 2012. ,
DOI : 10.1126/science.1228186
Integrative Regulatory Mapping Indicates that the RNA-Binding Protein HuR Couples Pre-mRNA Processing and mRNA Stability, Molecular Cell, vol.43, issue.3, pp.327-339, 2011. ,
DOI : 10.1016/j.molcel.2011.06.007
Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing, Nature Genetics, vol.76, issue.12, pp.1413-1415, 2008. ,
DOI : 10.1016/j.molcel.2004.12.004
The Muscleblind family of proteins: an emerging class of regulators of developmentally programmed alternative splicing, Differentiation, vol.74, issue.2-3, pp.65-80, 2006. ,
DOI : 10.1111/j.1432-0436.2006.00060.x
Molecular markers of extracellular matrix remodeling in glioblastoma vessels: Microarray study of laser-captured glioblastoma vessels, Glia, vol.3, issue.6, pp.559-572, 2007. ,
DOI : 10.1002/glia.20481
An EMT???Driven Alternative Splicing Program Occurs in Human Breast Cancer and Modulates Cellular Phenotype, PLoS Genetics, vol.19, issue.Pt 6, 2011. ,
DOI : 10.1371/journal.pgen.1002218.s020
The accessible chromatin landscape of the human genome, Nature, vol.27, issue.7414, pp.75-82, 2012. ,
DOI : 10.1038/nature11232
RBFOX2 Is an Important Regulator of Mesenchymal Tissue-Specific Splicing in both Normal and Cancer Tissues, Molecular and Cellular Biology, vol.33, issue.2, pp.396-405, 2013. ,
DOI : 10.1128/MCB.01174-12
Alternative isoform regulation in human tissue transcriptomes, Nature, vol.15, issue.7221, pp.470-476, 2008. ,
DOI : 10.1038/nature07509
iCLIP Predicts the Dual Splicing Effects of TIA-RNA Interactions, PLoS Biology, vol.4, issue.10, p.1000530, 2010. ,
DOI : 10.1371/journal.pbio.1000530.s015
ESRP1 and ESRP2 Are Epithelial Cell-Type-Specific Regulators of FGFR2 Splicing, Molecular Cell, vol.33, issue.5, pp.591-601, 2009. ,
DOI : 10.1016/j.molcel.2009.01.025
The epithelial splicing factors ESRP1 and ESRP2 positively and negatively regulate diverse types of alternative splicing events, RNA Biology, vol.6, issue.5, pp.546-562, 2009. ,
DOI : 10.4161/rna.6.5.9606
An ESRP-regulated splicing programme is abrogated during the epithelial???mesenchymal transition, The EMBO Journal, vol.8, issue.19, pp.3286-3300, 2010. ,
DOI : 10.1016/j.cell.2006.03.048
Understanding splicing regulation through RNA splicing maps, Trends in Genetics, vol.27, issue.3, pp.89-97, 2011. ,
DOI : 10.1016/j.tig.2010.12.001
Splice site strength???dependent activity and genetic buffering by poly-G runs, Nature Structural & Molecular Biology, vol.176, issue.10, pp.1094-1100, 2009. ,
DOI : 10.1038/nbt1051
Nuclear Matrix Factor hnRNP U/SAF-A Exerts a Global Control of Alternative Splicing by Regulating U2 snRNP Maturation, Molecular Cell, vol.45, issue.5, pp.656-668, 2012. ,
DOI : 10.1016/j.molcel.2012.01.009
Genome-wide Analysis of PTB-RNA Interactions Reveals a Strategy Used by the General Splicing Repressor to Modulate Exon Inclusion or Skipping, Molecular Cell, vol.36, issue.6, pp.996-1006, 2009. ,
DOI : 10.1016/j.molcel.2009.12.003
An RNA code for the FOX2 splicing regulator revealed by mapping RNA-protein interactions in stem cells, Nature Structural & Molecular Biology, vol.66, issue.2, pp.130-137, 2009. ,
DOI : 10.1038/nsmb.1545
Direct Competition between hnRNP C and U2AF65 Protects the Transcriptome from the Exonization of Alu Elements, Cell, vol.152, issue.3, pp.453-466, 2013. ,
DOI : 10.1016/j.cell.2012.12.023
Defining the regulatory network of the tissue-specific splicing factors Fox-1 and Fox-2, Genes & Development, vol.22, issue.18, pp.2550-2563, 2008. ,
DOI : 10.1101/gad.1703108