P. Keller, A. Schmidt, J. Wittbrodt, and E. Stelzer, Reconstruction of Zebrafish Early Embryonic Development by Scanned Light Sheet Microscopy, Science, vol.322, issue.5904, pp.1065-1069, 2008.
DOI : 10.1126/science.1162493

W. Denk, J. Strickler, and W. Webb, Two-photon laser scanning fluorescence microscopy, Science, vol.248, issue.4951, pp.73-76, 1990.
DOI : 10.1126/science.2321027

J. Squirrell, D. Wokosin, J. White, and B. Bavister, Long-term two-photon fluorescence imaging of mammalian embryos without compromising viability, Nature Biotechnology, vol.17, issue.8, pp.763-767, 1999.
DOI : 10.1038/11698

W. Supatto, D. Débarre, B. Moulia, E. Brouzes, and J. Martin, In vivo modulation of morphogenetic movements in Drosophila embryos with femtosecond laser pulses, Proceedings of the National Academy of Sciences, vol.102, issue.4, pp.1047-1052, 2005.
DOI : 10.1073/pnas.0405316102
URL : https://hal.archives-ouvertes.fr/hal-00829234

W. Supatto, D. Débarre, E. Farge, and E. Beaurepaire, Femtosecond pulse-induced microprocessing of live Drosophila embryos, Medical Laser Application, vol.20, issue.3, pp.207-216, 2005.
DOI : 10.1016/j.mla.2005.07.001

J. Squier, M. Müller, G. Brakenhoff, and K. Wilson, Third harmonic generation microscopy, Optics Express, vol.3, issue.9, pp.315-324, 1998.
DOI : 10.1364/OE.3.000315.m005

Y. Barad, H. Eisenberg, M. Horowitz, and Y. Silberberg, Nonlinear scanning laser microscopy by third harmonic generation, Applied Physics Letters, vol.70, issue.8, pp.922-924, 1997.
DOI : 10.1063/1.118442

D. Débarre, W. Supatto, E. Farge, B. Moulia, and M. Schanne-klein, Velocimetric third-harmonic generation microscopy:???micrometer-scale quantification of morphogenetic movements in unstained embryos, Optics Letters, vol.29, issue.24, pp.2881-2883, 2004.
DOI : 10.1364/OL.29.002881

N. Olivier, M. Luengo-oroz, L. Duloquin, E. Faure, and T. Savy, Cell Lineage Reconstruction of Early Zebrafish Embryos Using Label-Free Nonlinear Microscopy, Science, vol.329, issue.5994, pp.967-971, 2010.
DOI : 10.1126/science.1189428
URL : https://hal.archives-ouvertes.fr/hal-00519834

R. Aviles-espinosa, S. Santos, A. Brodschelm, W. Kaenders, and C. Alonso-ortega, Third-harmonic generation for the study of <italic>Caenorhabditis elegans</italic> embryogenesis, Journal of Biomedical Optics, vol.15, issue.4, p.46020, 2010.
DOI : 10.1117/1.3477535.2

A. Thayil, T. Watanabe, A. Jesacher, T. Wilson, and S. Srinivas, Long-term imaging of mouse embryos using adaptive harmonic generation microscopy, Journal of Biomedical Optics, vol.16, issue.4, p.46018, 2011.
DOI : 10.1117/1.3569614.5

C. Hsieh, S. Chen, Y. Lee, Y. Yang, and C. Sun, Higher harmonic generation microscopy of in vitro cultured mammal oocytes and embryos, Opt Express, vol.16, pp.11574-11588, 2008.

T. Karu, Primary and secondary mechanisms of action of visible to near-IR radiation on cells, Journal of Photochemistry and Photobiology B: Biology, vol.49, issue.1, pp.1-17, 1999.
DOI : 10.1016/S1011-1344(98)00219-X

P. Hockberger, T. Skimina, V. Centonze, C. Lavin, and S. Chu, Activation of flavin-containing oxidases underlies light-induced production of H2O2 in mammalian cells, Proceedings of the National Academy of Sciences, vol.96, issue.11, pp.6255-6260, 1999.
DOI : 10.1073/pnas.96.11.6255

R. Lavi, A. Shainberg, H. Friedmann, V. Shneyvays, and O. Rickover, Low Energy Visible Light Induces Reactive Oxygen Species Generation and Stimulates an Increase of Intracellular Calcium Concentration in Cardiac Cells, Journal of Biological Chemistry, vol.278, issue.42, pp.40917-40922, 2003.
DOI : 10.1074/jbc.M303034200

K. Neuman, C. E. Liou, G. Bergman, K. Block, and S. , Characterization of Photodamage to Escherichia coli in Optical Traps, Biophysical Journal, vol.77, issue.5, pp.2856-2863, 1999.
DOI : 10.1016/S0006-3495(99)77117-1

K. Ogawa and Y. Kobuke, Recent Advances in Two-Photon Photodynamic Therapy, Anti-Cancer Agents in Medicinal Chemistry, vol.8, issue.3, pp.269-279, 2008.
DOI : 10.2174/187152008783961860

M. Mitsunaga, M. Ogawa, N. Kosaka, L. Rosenblum, and P. Choyke, Cancer cell???selective in vivo near infrared photoimmunotherapy targeting specific membrane molecules, Nature Medicine, vol.7576, issue.12, pp.1685-1691, 2011.
DOI : 10.1002/jso.2930310402

K. König, H. Liang, M. Berns, and B. Tromberg, Cell damage in near-infrared multimode optical traps as a result of multiphoton absorption, Optics Letters, vol.21, issue.14, pp.1090-1092, 1996.
DOI : 10.1364/OL.21.001090

S. Mohanty, A. Rapp, S. Monajembashi, P. Gupta, and K. Greulich, Comet Assay Measurements of DNA Damage in Cells by Laser Microbeams and Trapping Beams with Wavelengths Spanning a Range of 308 nm to 1064 nm, Radiation Research, vol.157, issue.4, pp.378-385, 2002.
DOI : 10.1667/0033-7587(2002)157[0378:CAMODD]2.0.CO;2

S. Mohanty, M. Sharma, and P. Gupta, Generation of ROS in cells on exposure to CW and pulsed near-infrared laser tweezers, Photochem. Photobiol. Sci., vol.4, issue.1, pp.134-139, 2006.
DOI : 10.1039/B506061C

G. Leitz, E. Fallman, S. Tuck, and O. Axner, Stress Response in Caenorhabditis elegans Caused by Optical Tweezers: Wavelength, Power, and Time Dependence, Biophysical Journal, vol.82, issue.4, pp.2224-2231, 2002.
DOI : 10.1016/S0006-3495(02)75568-9

S. Iwanaga, N. Smith, K. Fujita, and S. Kawata, Slow Ca2+ wave stimulation using low repetition rate femtosecond pulsed irradiation, Optics Express, vol.14, issue.2, pp.717-725, 2006.
DOI : 10.1364/OPEX.14.000717

D. Stevenson, B. Agate, X. Tsampoula, P. Fischer, and C. Brown, Femtosecond optical transfection of cells:viability and efficiency, Optics Express, vol.14, issue.16, pp.7125-7133, 2006.
DOI : 10.1364/OE.14.007125

C. Cain, R. Thomas, G. Noojin, D. Stolarski, and P. Kennedy, Sub-50-fs laser retinal damage thresholds in primate eyes with group velocity dispersion, self-focusing and low-density plasmas, Graefe's Archive for Clinical and Experimental Ophthalmology, vol.4620, issue.2, pp.101-112, 2005.
DOI : 10.1007/s00417-004-0924-9

B. King and D. Oh, Spatial Control of Reactive Oxygen Species Formation in Fibroblasts Using Two-photon Excitation??, Photochemistry and Photobiology, vol.81, issue.1, pp.1-6, 2004.
DOI : 10.1111/j.1751-1097.2004.tb00041.x

A. Uchugonova, K. Koenig, R. Bueckle, A. Isemann, and G. Tempea, Targeted transfection of stem cells with sub-20 femtosecond laser pulses, Optics Express, vol.16, issue.13, pp.9357-9364, 2008.
DOI : 10.1364/OE.16.009357

S. Chung and E. Mazur, Surgical applications of femtosecond lasers, Journal of Biophotonics, vol.77, issue.10, pp.557-572, 2009.
DOI : 10.1002/jbio.200910053

J. Stephens, S. Mohanty, S. Genc, X. Kong, and K. Yokomori, Spatially sculpted laser scissors for study of DNA damage and repair, Journal of Biomedical Optics, vol.14, issue.5, p.54004, 2009.
DOI : 10.1117/1.3213601

D. Trautlein, M. Deibler, A. Leitenstorfer, and . Ferrando-, Specific local induction of DNA strand breaks by infrared multi-photon absorption, Nucleic Acids Research, vol.38, issue.3, pp.14-14, 2010.
DOI : 10.1093/nar/gkp932

V. Hovhannisyan, A. Ghazaryan, Y. Chen, S. Chen, and C. Dong, Photophysical mechanisms of collagen modification by 80 MHz femtosecond laser, Optics Express, vol.18, issue.23, pp.24037-24047, 2010.
DOI : 10.1364/OE.18.024037.m003

S. Kalies, K. Kuetemeyer, and A. Heisterkamp, Mechanisms of high-order photobleaching and its relationship to intracellular ablation, Biomedical Optics Express, vol.2, issue.4, pp.805-816, 2011.
DOI : 10.1364/BOE.2.000805

H. Oehring, I. Riemann, P. Fischer, K. Halbhuber, and K. König, Ultrastructure and reproduction behaviour of single CHO-K1 cells exposed to near infrared femtosecond laser pulses, Scanning, vol.66, issue.6, pp.263-270, 2000.
DOI : 10.1002/sca.4950220406

I. Chen, S. Shu, C. Sun, P. Cheng, and B. Lin, Wavelength dependent damage in biological multiphoton confocal microscopy: A micro-spectroscopic comparison between femtosecond ti:sapphire and cr:forsterite laser sources, Optical and Quantum Electronics, vol.34, issue.12, pp.1251-1266, 2002.
DOI : 10.1023/A:1021303426482

B. Masters, P. So, C. Buehler, N. Barry, and J. Sutin, Mitigating thermal mechanical damage potential during two-photon dermal imaging, Journal of Biomedical Optics, vol.9, issue.6, pp.1265-1270, 2004.
DOI : 10.1117/1.1806135
URL : http://www.escholarship.org/uc/item/1mz9r1r9

K. König, T. Becker, P. Fischer, I. Riemann, and K. Halbhuber, Pulse-length dependence of cellular response to intense near-infrared laser pulses in multiphoton microscopes, Optics Letters, vol.24, issue.2, pp.113-115, 1999.
DOI : 10.1364/OL.24.000113

U. Tirlapur, K. König, C. Peuckert, R. Krieg, and K. Halbhuber, Femtosecond Near-Infrared Laser Pulses Elicit Generation of Reactive Oxygen Species in Mammalian Cells Leading to Apoptosis-like Death, Experimental Cell Research, vol.263, issue.1, pp.88-97, 2001.
DOI : 10.1006/excr.2000.5082

M. Denton, K. Schuster, and B. Rockwell, Accurate measure of laser irradiance threshold for near-infrared photo-oxidation with a modified confocal microscope, Journal of Microscopy, vol.13, issue.3, pp.164-171, 2006.
DOI : 10.1073/pnas.0832308100

A. Hopt and E. Neher, Highly Nonlinear Photodamage in Two-Photon Fluorescence Microscopy, Biophysical Journal, vol.80, issue.4, pp.2029-2036, 2001.
DOI : 10.1016/S0006-3495(01)76173-5

K. König, P. So, W. Mantulin, B. Tromberg, and E. Gratton, Two-photon excited lifetime imaging of autofluorescence in cells during uva and nir photostress, J Microsc, vol.183, pp.197-204, 1996.

J. Cruz, J. Mcmullen, R. Williams, and W. Zipfel, Feasibility of using multiphoton excited tissue autofluorescence for in vivo human histopathology, Biomedical Optics Express, vol.1, issue.5, p.1320, 2010.
DOI : 10.1364/BOE.1.001320

J. Herz, V. Siffrin, A. Hauser, A. Brandt, and T. Leuenberger, Expanding Two-Photon Intravital Microscopy to the Infrared by Means of Optical Parametric Oscillator, Biophysical Journal, vol.98, issue.4, pp.715-723, 2010.
DOI : 10.1016/j.bpj.2009.10.035

A. Vogel, J. Noack, G. Huttman, and G. Paltauf, Mechanisms of femtosecond laser nanosurgery of cells and tissues, Applied Physics B, vol.18, issue.2???3, pp.1015-1047, 2005.
DOI : 10.1007/s00340-005-2036-6

A. Vogel, J. Noack, K. Nahen, D. Theisen, and S. Bush, Energy balance of optical breakdown in water at nanosecond to femtosecond time scales, Applied Physics B, vol.68, issue.2, pp.135-136, 1999.
DOI : 10.1007/s003400050617

A. Vogel and V. Venugopalan, Mechanisms of Pulsed Laser Ablation of Biological Tissues, Chemical Reviews, vol.103, issue.2, pp.577-644, 2003.
DOI : 10.1021/cr010379n

Y. Fu, H. Wang, R. Shi, and J. Cheng, Characterization of photodamage in coherent anti-Stokes Raman scattering microscopy, Optics Express, vol.14, issue.9, pp.3942-3951, 2006.
DOI : 10.1364/OE.14.003942

A. King, E. Gottlieb, D. Brooks, M. Murphy, and J. Dunaief, Mitochondriaderived Reactive Oxygen Species Mediate Blue Light?induced Death of Retinal Pigment Epithelial Cells, Photochem Photobiol, vol.79, p.470, 2004.

L. Cheng and L. Packer, Photodamage to hepatocytes by visible light, FEBS Letters, vol.17, issue.1, pp.124-132, 1979.
DOI : 10.1016/0014-5793(79)80066-6

M. Nichols, E. Barth, and J. Nichols, Reduction in DNA Synthesis During Two-photon Microscopy of Intrinsic Reduced Nicotinamide Adenine Dinucleotide Fluorescence??, Photochemistry and Photobiology, vol.80, issue.2, pp.259-269, 2005.
DOI : 10.1111/j.1751-1097.2005.tb00183.x

H. Friedman, R. Lubart, L. Laulicht, and S. Rochkind, A possible explanation of laser-induced stimulation and damage of cell cultures, Journal of Photochemistry and Photobiology B: Biology, vol.11, issue.1, pp.87-91, 1999.
DOI : 10.1016/1011-1344(91)80271-I

H. Koester, D. Baur, R. Uhl, and S. Hell, Ca2+ Fluorescence Imaging with Pico- and Femtosecond Two-Photon Excitation: Signal and Photodamage, Biophysical Journal, vol.77, issue.4, pp.2226-2236, 1999.
DOI : 10.1016/S0006-3495(99)77063-3
URL : http://doi.org/10.1016/s0006-3495(99)77063-3

E. Wieschaus and C. Nusslein-volhard, Drosophila: A Practical Approach, pp.179-214, 1998.

Y. Azou-gros, F. Tsai, J. Alvarado, A. Bertin, and F. Iv, Septins promote F-actin ring formation by crosslinking actin filaments into curved bundles, Nature Cell Biology, vol.16, pp.322-334, 2014.
URL : https://hal.archives-ouvertes.fr/hal-01060568

T. Lecuit and E. Wieschaus, Embryo, The Journal of Cell Biology, vol.104, issue.4, pp.849-860, 2000.
DOI : 10.1083/jcb.134.6.1469

P. Wittkopp, S. Carroll, and A. Kopp, Evolution in black and white: genetic control of pigment patterns in Drosophila, Trends in Genetics, vol.19, issue.9, pp.495-504, 2003.
DOI : 10.1016/S0168-9525(03)00194-X

K. Palmer and D. Williams, Optical properties of water in the near infrared*, Journal of the Optical Society of America, vol.64, issue.8, pp.1107-1110, 1974.
DOI : 10.1364/JOSA.64.001107

D. Sweeton, S. Parks, M. Costa, and E. Wieschaus, Gastrulation in drosophila: the formation of the ventral furrow and posterior midgut invaginations, Development, vol.112, pp.775-789, 1991.

W. Supatto, A. Mcmahon, S. Fraser, and A. Stathopoulos, Quantitative imaging of collective cell migration during Drosophila gastrulation: multiphoton microscopy and computational analysis, Nature Protocols, vol.120, issue.10, pp.1397-1412, 2009.
DOI : 10.1016/S0165-0270(01)00438-1

T. Cash, Y. Pan, and M. Simon, Reactive oxygen species and cellular oxygen sensing, Free Radical Biology and Medicine, vol.43, issue.9, pp.1219-1225, 2007.
DOI : 10.1016/j.freeradbiomed.2007.07.001

S. Chu, S. Chen, T. Tsai, T. Liu, and C. Lin, In vivo developmental biology study using noninvasive multi-harmonic generation microscopy, Optics Express, vol.11, issue.23, pp.3093-3099, 2003.
DOI : 10.1364/OE.11.003093.m004

C. Sun, S. Chu, S. Chen, T. Tsai, and T. Liu, Higher harmonic generation microscopy for developmental biology, Journal of Structural Biology, vol.147, issue.1, pp.19-30, 2004.
DOI : 10.1016/j.jsb.2003.10.017

T. Watanabe, A. Thayil, A. Jesacher, K. Grieve, and D. Débarre, Characterisation of the dynamic behaviour of lipid droplets in the early mouse embryo using adaptive harmonic generation microscopy, BMC Cell Biology, vol.11, issue.1, p.38, 2010.
DOI : 10.1186/1471-2121-11-38
URL : https://hal.archives-ouvertes.fr/hal-00681946

A. Schönle and S. Hell, Heating by absorption in the focus of an objective lens, Optics Letters, vol.23, issue.5, pp.325-327, 1998.
DOI : 10.1364/OL.23.000325

Y. Liu, G. Sonek, M. Berns, and B. Tromberg, Physiological monitoring of optically trapped cells: assessing the effects of confinement by 1064-nm laser tweezers using microfluorometry, Biophysical Journal, vol.71, issue.4, pp.2158-2167, 1996.
DOI : 10.1016/S0006-3495(96)79417-1

I. Saytashev, S. Arkhipov, N. Winkler, K. Zuraski, and V. Lozovoy, Pulse duration and energy dependence of photodamage and lethality induced by femtosecond near infrared laser pulses in Drosophila melanogaster, Journal of Photochemistry and Photobiology B: Biology, vol.115, pp.42-50, 2012.
DOI : 10.1016/j.jphotobiol.2012.06.009

K. König, Y. Tadir, P. Patrizio, M. Berns, and B. Tromberg, Andrology: Effects of ultraviolet exposure and near infrared laser tweezers on human spermatozoa, Human Reproduction, vol.11, issue.10, pp.2162-2164, 1996.
DOI : 10.1093/oxfordjournals.humrep.a019069

K. König, P. So, W. Mantulin, and E. Gratton, Cellular response to near-infrared femtosecond laser pulses in two-photon microscopes, Optics Letters, vol.22, issue.2, pp.135-136, 1997.
DOI : 10.1364/OL.22.000135

S. Chu, T. Liu, and C. Sun, Real-time second-harmonic-generation microscopy based on a 2-GHz repetition rate Ti:sapphire laser, Optics Express, vol.11, issue.8, pp.933-938, 2003.
DOI : 10.1364/OE.11.000933.m003

N. Ji, J. Magee, and E. Betzig, High-speed, low-photodamage nonlinear imaging using passive pulse splitters, Nat Methods, 2008.
DOI : 10.1038/nmeth0209-179

X. Chen, U. Leischner, N. Rochefort, I. Nelken, and A. Konnerth, Functional mapping of single spines in cortical neurons in vivo, Nature, vol.45, issue.7357, pp.501-505, 2011.
DOI : 10.1038/nature10193

J. Jureller, H. Kim, and N. Scherer, Stochastic scanning multiphoton multifocal microscopy, Optics Express, vol.14, issue.8, pp.3406-3414, 2006.
DOI : 10.1364/OE.14.003406

G. Donnert, C. Eggeling, and S. Hell, Major signal increase in fluorescence microscopy through dark-state relaxation, Nature Methods, vol.77, issue.1, pp.81-87, 2007.
DOI : 10.1038/nbt0102-87

K. Yamagata, R. Suetsugu, and T. Wakayama, Long-Term, Six-Dimensional Live-Cell Imaging for the Mouse Preimplantation Embryo That Does Not Affect Full-Term Development, Journal of Reproduction and Development, vol.55, issue.3, pp.343-350, 2009.
DOI : 10.1262/jrd.20166

S. Huang, A. Heikal, and W. Webb, Two-Photon Fluorescence Spectroscopy and Microscopy of NAD(P)H and Flavoprotein, Biophysical Journal, vol.82, issue.5, pp.2811-2825, 2002.
DOI : 10.1016/S0006-3495(02)75621-X

A. Valencia and I. Kochevar, Nox1-Based NADPH Oxidase Is the Major Source of UVA-Induced Reactive Oxygen Species in Human Keratinocytes, Journal of Investigative Dermatology, vol.128, issue.1, pp.214-222, 2008.
DOI : 10.1038/sj.jid.5700960

D. Shcherbo, I. Shemiakina, A. Ryabova, K. Luker, and B. Schmidt, Near-infrared fluorescent proteins, Nature Methods, vol.7, issue.10, pp.827-829, 2010.
DOI : 10.1128/JVI.76.23.12149-12161.2002

D. Shcherbakova, O. Subach, and V. Verkhusha, Red Fluorescent Proteins: Advanced Imaging Applications and Future Design, Angewandte Chemie International Edition, vol.29, issue.43, pp.10724-10738, 2012.
DOI : 10.1002/anie.201200408

G. Lukinavicius, K. Umezawa, N. Olivier, A. Honigmann, and G. Yang, A near-infrared fluorophore for live-cell super-resolution microscopy of cellular proteins, Nature Chemistry, vol.101, issue.2, pp.132-139, 2013.
DOI : 10.1038/nchem.1546

D. Kobat, M. Durst, N. Nishimura, A. Wong, and C. Schaffer, Deep tissue multiphoton microscopy using longer wavelength excitation, Optics Express, vol.17, issue.16, pp.13354-13364, 2009.
DOI : 10.1364/OE.17.013354

M. Born and E. Wolf, Principles of Optics: Electromagnetic Theory of Propagation, Interference and Diffraction of Light, 1999.
DOI : 10.1017/CBO9781139644181

D. Débarre, W. Supatto, and E. Beaurepaire, Structure sensitivity in third-harmonic generation microscopy, Optics Letters, vol.30, issue.16, pp.2134-2136, 2005.
DOI : 10.1364/OL.30.002134

R. Fork, O. Martinez, and J. Gordon, Negative dispersion using pairs of prisms, Optics Letters, vol.9, issue.5, pp.150-152, 1984.
DOI : 10.1364/OL.9.000150