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The Semantic Measures Library and Toolkit: fast computation of semantic similarity and relatedness using biomedical ontologies

Abstract : The Semantic Measures Library and Toolkit are robust open source and easy to use software solutions dedicated to semantic measures. They can be used for large scale computations and analyses of semantic similarities between terms/concepts defined in terminologies and ontologies. The comparison of entities (e.g. genes) annotated by concepts is also supported. A large collection of measures is available. Not limited to a specific application context, the library and the toolkit can be used with various controlled vocabularies and ontology specifications (e.g. OBO, RDF). The project targets both designers and practitioners of semantic measures providing a JAVA library, as well as a command-line tool which can be used on personal computers or computer clusters.
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https://hal.archives-ouvertes.fr/hal-01059329
Contributor : Sylvie Ranwez Connect in order to contact the contributor
Submitted on : Tuesday, October 20, 2020 - 3:47:45 PM
Last modification on : Friday, October 22, 2021 - 2:58:33 PM
Long-term archiving on: : Thursday, January 21, 2021 - 7:15:55 PM

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Sébastien Harispe, Sylvie Ranwez, Stefan Janaqi, Jacky Montmain. The Semantic Measures Library and Toolkit: fast computation of semantic similarity and relatedness using biomedical ontologies. Bioinformatics, Oxford University Press (OUP), 2014, 30 (5), pp.740-742. ⟨10.1093/bioinformatics/btt581⟩. ⟨hal-01059329⟩

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